mRNA_E-siliculosus-1a_M_contig91.17184.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig91.17184.1
Unique NamemRNA_E-siliculosus-1a_M_contig91.17184.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig91.17184.1 vs. uniprot
Match: D7FNT6_ECTSI (Derlin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNT6_ECTSI)

HSP 1 Score: 490 bits (1262), Expect = 8.100e-170
Identity = 247/283 (87.28%), Postives = 257/283 (90.81%), Query Frame = 2
Query:   77 KNMPLGFVNGGGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAGMPAPGAVRPPRDIPRTGGGSGWGTGRTLGSS 925
            KNMPLG  NG GG+SPEELFRSIPPVSKVLIVGMVGT+ S+VLGVCSPY+YALSWPLVWNKFHLWRLFTSG+FPG P Y  LM M S+GMFS+RYEKDGFSMGGGGGSADYAYMLLFGFV IE SLLLLFYQPFMIFT AIMFYICYVWSRKNPGMSVSFWGI+INALYVPWVM+A+RVVLG SIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWG EGSGVTMQAGG           AGMPAPGAVRPPRDIPRTGGGSGWGTGRTLGSS
Sbjct:   17 KNMPLGVFNGSGGSSPEELFRSIPPVSKVLIVGMVGTILSVVLGVCSPYQYALSWPLVWNKFHLWRLFTSGMFPGTPSYETLMLMISMGMFSIRYEKDGFSMGGGGGSADYAYMLLFGFVGIETSLLLLFYQPFMIFTTAIMFYICYVWSRKNPGMSVSFWGIIINALYVPWVMVALRVVLGHSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGHEGSGVTMQAGGXXXXXXXXXXXAGMPAPGAVRPPRDIPRTGGGSGWGTGRTLGSS 299          
BLAST of mRNA_E-siliculosus-1a_M_contig91.17184.1 vs. uniprot
Match: A0A6H5KW67_9PHAE (Derlin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW67_9PHAE)

HSP 1 Score: 357 bits (915), Expect = 8.310e-119
Identity = 183/190 (96.32%), Postives = 187/190 (98.42%), Query Frame = 2
Query:  356 RYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAGMPAPGAVRPPRDIPRTGGGSGWGTGRTLGSS 925
            RYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGI INALYVPWVMIAMRV +G+SIFMALLGIAVGHLFYFLVDVLPDLH+IDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAG+PAPG VRPPRDIPRTGGGSGWGTGRTLGSS
Sbjct:   10 RYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGIHINALYVPWVMIAMRVAIGASIFMALLGIAVGHLFYFLVDVLPDLHEIDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAGVPAPGVVRPPRDIPRTGGGSGWGTGRTLGSS 199          
BLAST of mRNA_E-siliculosus-1a_M_contig91.17184.1 vs. uniprot
Match: A0A835YYA5_9STRA (Derlin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYA5_9STRA)

HSP 1 Score: 243 bits (620), Expect = 1.640e-73
Identity = 130/273 (47.62%), Postives = 169/273 (61.90%), Query Frame = 2
Query:  107 GGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAGMPAPGAVRPPRDIPRTGGGSGWGTG-RTLGS 922
            G   SPEE F+S+PPVSKVLI  +VG+   ++LGV   Y  AL W  + +KF +WRL+T+ +F G P +  LM++   G +S+RYEKD F  GGGGGSADYA+ML FG   +    L  F  PF+  +  +MF I YVWSRK P +  SFWGI + ++YVPWVM+A  ++ G+S F  LLGI VGHL+YFLVDV+PD    D+L TP FL ++ G+G   +GV                    PAPG   PPR  PR GGG  WG+G R LG+
Sbjct:   11 GAAGSPEEWFKSLPPVSKVLITSLVGSTVLVMLGVIDAYNLALLWSPLRHKFEIWRLYTNAVFLGAPSFPFLMNLMIFGQYSIRYEKDAFDTGGGGGSADYAWMLAFGMAVLSGLSLAFFVVPFL--SIPLMFMIIYVWSRKVPDVPTSFWGITVQSVYVPWVMVAFNLLTGASAFNPLLGIGVGHLYYFLVDVVPDQFGKDVLTTPAFLTDLFGYGGLNTGVQR-----------------FPAPGHAAPPRGFPRPGGGHTWGSGGRPLGT 264          
BLAST of mRNA_E-siliculosus-1a_M_contig91.17184.1 vs. uniprot
Match: A0A6H5KUK6_9PHAE (Derlin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUK6_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 3.980e-54
Identity = 91/105 (86.67%), Postives = 96/105 (91.43%), Query Frame = 2
Query:   83 MPLGFVNGGGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRY----EKDGFSMG 385
            MPLGFVNGG GNSPEELFRSIPPVSKVLI+GMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPG+PGYGALMS+FSIGMFS+R+    EK  F  G
Sbjct:    1 MPLGFVNGGSGNSPEELFRSIPPVSKVLILGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGKPGYGALMSIFSIGMFSIRWSGHQEKSFFGAG 105          
BLAST of mRNA_E-siliculosus-1a_M_contig91.17184.1 vs. uniprot
Match: A0A7S2XX42_9STRA (Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX42_9STRA)

HSP 1 Score: 180 bits (457), Expect = 2.010e-49
Identity = 102/275 (37.09%), Postives = 165/275 (60.00%), Query Frame = 2
Query:  107 GGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDG-FSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSF-WGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAGMPAPGAVRPPRDIPRTGGGSGWGTGRTLGSS 925
            G G SP++ + S+P ++KV +   +    ++  G+       L++PL+W KF  WRL T+    G+ G+G L++ + +  +S +YE  G F+ GGGGG +DYA+M++FG V +      +   PFM   + ++F++ YVWSR+ P ++VSF +G+ I ++Y PW  +A +++LG+S FMALLGIAVGHL+YFL +++PD +D ++L+TP F+++  G+G      T  A    A  G+  G  G PA  +   P       GG  WG G  LG++
Sbjct:    8 GQGGSPQDWYNSVPFITKVWLTSTLAVTLAVNFGILPAGHLFLNFPLIWKKFQFWRLLTNFTCMGKLGFGTLITFYMLYSYSEKYETGGCFNTGGGGGVSDYAFMMMFGMVVMNIIGYFM-NTPFM--AQPLVFFVMYVWSRRFPDLTVSFMFGVKIQSIYAPWAYVAFQILLGNSPFMALLGIAVGHLYYFLAEIVPDQYDFEILKTPVFMIHYFGYGAYHPVNTAPA----AQRGSVNGTGGQPANSSFPMP-------GGRQWGQGHVLGTN 268          
BLAST of mRNA_E-siliculosus-1a_M_contig91.17184.1 vs. uniprot
Match: A0A7S0SWB6_9STRA (Derlin n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWB6_9STRA)

HSP 1 Score: 169 bits (427), Expect = 4.970e-45
Identity = 96/281 (34.16%), Postives = 160/281 (56.94%), Query Frame = 2
Query:  107 GGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAGMP------APGAVRPPRD--IPRTGGGSGWGTGRTLGSS 925
            G G+S ++ + +IP V+KVLI   V     +   +  P +  L W  +W+KFH+WRLFT  +F G   +  LM    +   S++YE + ++ GGGG SADY Y++++  V +   L++ +Y  FMI ++ +M+ I YVWSR+     V+ +G     LY+PW+ I + +++G+SI   L+GIAVGH +YFL++V+P ++++DL++TP+F ++++ +    +G T                + +P      AP A  P R    P  G G  WG GR LG++
Sbjct:    9 GQGDSIQDWYNNIPFVTKVLITSTVVIGGLLTFQLIPPQDLILDWRFIWHKFHIWRLFTPFVFAGSFSFNFLMHTVVLYQNSLKYENNPYNTGGGGSSADYLYLIIYSIVLL---LVIAYYMNFMILSDPLMYVIVYVWSRRESESVVNMYGFKFKGLYLPWIYIGISMLMGNSIVPPLIGIAVGHSYYFLIEVMPTIYNVDLIRTPKFCIDIITYS---TGRTPNV------------LSNIPIPNLAAAPNAGAPVRGNGFPNLGTGHNWGRGRVLGAN 271          
BLAST of mRNA_E-siliculosus-1a_M_contig91.17184.1 vs. uniprot
Match: A0A8J2WZQ4_9STRA (Derlin n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZQ4_9STRA)

HSP 1 Score: 157 bits (398), Expect = 6.770e-41
Identity = 98/280 (35.00%), Postives = 149/280 (53.21%), Query Frame = 2
Query:   89 LGFVNGGGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFM---IFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAGMPAPGAVRPPRDIPRTGGGSGWGTGRTLG 919
            LG V  G  N  ++   S+PPV++V  V   GT   I  G+  PY    SWP V ++F +WRL T   F G   +  L++++ +  +S  YE   ++ GGGG +ADY +M+  G      +L+L     FM      +A+++ + YVWSR+NP   VS +G  + A+ +PW + A  +V+G+S+ + L+GI VGHL+YF ++VLPD + +D+++TP+ L++  G                 A G R GAA         PPR      GG  WG GR LG
Sbjct:    7 LGRVGQGPANPVKDWLESLPPVTRVWFVASFGTTCLISFGLVDPYRLLWSWPAVRHRFEVWRLITPYFFFGGFSFPFLINLYLLQQYSKGYEISPYNTGGGGDTADYIWMMFLG------ALMLCGVSEFMGQVAPAQAMLYLVLYVWSRRNPTQQVSLYGFPVQAIMLPWALCAFNMVIGNSLLLPLMGIGVGHLYYFAIEVLPDAYGVDIVKTPRALIDACGGXXXXXXAV--------APGVR-GAAXXXXXXXXAPPR------GGHNWGGGRVLG 265          
BLAST of mRNA_E-siliculosus-1a_M_contig91.17184.1 vs. uniprot
Match: A0A482RVM1_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVM1_9ARCH)

HSP 1 Score: 156 bits (394), Expect = 1.270e-40
Identity = 80/212 (37.74%), Postives = 126/212 (59.43%), Query Frame = 2
Query:  113 GNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNML 748
            G++ +  F S+P ++KV +V  + T   +   +       L WP V NKFH WRLFT  +F G   +   +    +     RYE + F+ G GG SAD+ ++LL   + +   L+L +     + +E +++ I YVWSR+ P   ++ WG    ALY+PWV IA+R+V+G +I   L+G+AVGHL+YFLV VLP  H +DL++TP+F V+++
Sbjct:    5 GDTLQGWFSSVPLITKVFLVSTLITGAGLSFKMLDGGSLVLLWPYVQNKFHFWRLFTCFVFAGPFSFNFALHTLVLYENCKRYESNPFNTGAGGNSADFLWLLL---IAMTVLLVLAYIFDMYVLSEPLLYVIMYVWSRREPDAMLNIWGFRFKALYLPWVYIAIRMVMGGAITEPLIGVAVGHLYYFLVQVLPATHGVDLIKTPKFCVDIV 213          
BLAST of mRNA_E-siliculosus-1a_M_contig91.17184.1 vs. uniprot
Match: A0A7S2SNX6_9STRA (Derlin n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNX6_9STRA)

HSP 1 Score: 156 bits (394), Expect = 2.340e-40
Identity = 81/224 (36.16%), Postives = 133/224 (59.38%), Query Frame = 2
Query:   83 MPLGFVNGGGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQ-PFMIFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLG 751
            M  G    G GN+P+E F S+PP+++ L+V ++ T  +   G+ SP++  L W  VW  F +WRL ++ +F G   +  L++++ +  ++ RYE   F+ G GG SAD+A+ML  G  C   ++   F+  PFM   + + F I YVW+RKNP    S +     A Y+PW M+A  +++G+ I++ L+GIA GH++YFL    P     D+++TP F++ +LG
Sbjct:    1 MMRGMGRVGDGNTPQEWFYSLPPITRSLLVAVLATTAACSFGIVSPFQLHLDWTRVWRGFEIWRLASNFVFFGTFSFPFLINLYLLVQYASRYEVSPFNTGAGGSSADFAWMLTIG--CSLLAIASYFFGLPFM--GQPMSFMIMYVWTRKNPDEMTSIFFFKFQAFYLPWAMLAFNLLIGNDIYLPLMGIAAGHVYYFLHYTAPAELGRDIIKTPTFMIELLG 220          
BLAST of mRNA_E-siliculosus-1a_M_contig91.17184.1 vs. uniprot
Match: A0A5D6YDW5_9STRA (Derlin n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDW5_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.500e-38
Identity = 95/267 (35.58%), Postives = 136/267 (50.94%), Query Frame = 2
Query:  119 SPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAGMPAPGAVRPPRDIPRTGGGSGWGTGRTLG 919
            S E  F ++P +++  +     +     LG   P    L + LVW+KF LWRL TS ++ G  G+  LM +  +  ++ R E+D F  GGG  +AD+A+ML FG V +     + F+        +++F I YVWSR+NP M V+ WG     LY+PW +IA  V++G +  M + G+  GHL+YFL++VLP      L+QTP F  NM     +G+G T                   P  GA  P       GGG  WGTGR LG
Sbjct:    4 SIEAWFHAMPTITRFYLSACFLSTCLSALGFLQPRSLYLDFDLVWHKFQLWRLPTSFMYLGGFGFPFLMQLMILNNYASRLEEDPFPSGGGP-TADFAFMLFFGAVVLWV---IAFFMALPFLGSSLIFMIVYVWSRRNPTMPVAIWGFQFEGLYLPWALIAFTVLMGGNPMMDIFGVIAGHLYYFLLEVLPTTKGWTLIQTPSFFANMFP-SPQGTGAT-------------------PIIGARGPAGAAAAAGGGYTWGTGRPLG 246          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig91.17184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNT6_ECTSI8.100e-17087.28Derlin n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A6H5KW67_9PHAE8.310e-11996.32Derlin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
A0A835YYA5_9STRA1.640e-7347.62Derlin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A6H5KUK6_9PHAE3.980e-5486.67Derlin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
A0A7S2XX42_9STRA2.010e-4937.09Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 Rep... [more]
A0A7S0SWB6_9STRA4.970e-4534.16Derlin n=1 Tax=Chromulina nebulosa TaxID=96789 Rep... [more]
A0A8J2WZQ4_9STRA6.770e-4135.00Derlin n=1 Tax=Pelagomonas calceolata TaxID=35677 ... [more]
A0A482RVM1_9ARCH1.270e-4037.74Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S2SNX6_9STRA2.340e-4036.16Derlin n=1 Tax=Rhizochromulina marina TaxID=103483... [more]
A0A5D6YDW5_9STRA1.500e-3835.58Derlin n=1 Tax=Pythium brassicum TaxID=1485010 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig91contigE-siliculosus-1a_M_contig91:21573..25742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size846
Model size1572
Exons4
Ec32 orthologEc-12_003430.1
Ec32 ortholog descriptionDerlin
Hectar predicted targeting categorysignal anchor
BRITEko00000,ko00001,ko00002
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.I
EggNOG OGsCOG5291@1,KOG0858@2759
EggNOG free text desc.ubiquitin-dependent ERAD pathway
KEGG ModuleM00403
KEGG Pathwayko04141,map04141
KEGG koko:K13989
Preferred nameDER1
Seed eggNOG ortholog2880.D7FNT6
Seed ortholog evalue4.9e-135
Seed ortholog score487.3
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig91.17184.1prot_E-siliculosus-1a_M_contig91.17184.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig91 22217..24674 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936437.4347172-UTR-E-siliculosus-1a_M_contig91:21572..222161622936437.4347172-UTR-E-siliculosus-1a_M_contig91:21572..22216Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 21573..22216 -
1696251078.0863488-UTR-E-siliculosus-1a_M_contig91:21572..222161696251078.0863488-UTR-E-siliculosus-1a_M_contig91:21572..22216Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 21573..22216 -
1622936437.5195272-UTR-E-siliculosus-1a_M_contig91:24674..247291622936437.5195272-UTR-E-siliculosus-1a_M_contig91:24674..24729Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 24675..24729 -
1696251078.1394277-UTR-E-siliculosus-1a_M_contig91:24674..247291696251078.1394277-UTR-E-siliculosus-1a_M_contig91:24674..24729Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 24675..24729 -
1622936437.5354893-UTR-E-siliculosus-1a_M_contig91:25715..257421622936437.5354893-UTR-E-siliculosus-1a_M_contig91:25715..25742Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 25716..25742 -
1696251078.151365-UTR-E-siliculosus-1a_M_contig91:25715..257421696251078.151365-UTR-E-siliculosus-1a_M_contig91:25715..25742Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 25716..25742 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936437.4608712-CDS-E-siliculosus-1a_M_contig91:22216..225351622936437.4608712-CDS-E-siliculosus-1a_M_contig91:22216..22535Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 22217..22535 -
1696251078.0991316-CDS-E-siliculosus-1a_M_contig91:22216..225351696251078.0991316-CDS-E-siliculosus-1a_M_contig91:22216..22535Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 22217..22535 -
1622936437.4842064-CDS-E-siliculosus-1a_M_contig91:23160..234121622936437.4842064-CDS-E-siliculosus-1a_M_contig91:23160..23412Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 23161..23412 -
1696251078.1088104-CDS-E-siliculosus-1a_M_contig91:23160..234121696251078.1088104-CDS-E-siliculosus-1a_M_contig91:23160..23412Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 23161..23412 -
1622936437.5016708-CDS-E-siliculosus-1a_M_contig91:24399..246741622936437.5016708-CDS-E-siliculosus-1a_M_contig91:24399..24674Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 24400..24674 -
1696251078.1265304-CDS-E-siliculosus-1a_M_contig91:24399..246741696251078.1265304-CDS-E-siliculosus-1a_M_contig91:24399..24674Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 24400..24674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig91.17184.1

>prot_E-siliculosus-1a_M_contig91.17184.1 ID=prot_E-siliculosus-1a_M_contig91.17184.1|Name=mRNA_E-siliculosus-1a_M_contig91.17184.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=282bp
MPLGFVNGGGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYA
LSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDGFSM
GGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRK
NPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLV
DVLPDLHDIDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAG
MPAPGAVRPPRDIPRTGGGSGWGTGRTLGSS*
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mRNA from alignment at E-siliculosus-1a_M_contig91:21573..25742-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig91.17184.1 ID=mRNA_E-siliculosus-1a_M_contig91.17184.1|Name=mRNA_E-siliculosus-1a_M_contig91.17184.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4170bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:21573..25742- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTTAACATCAACGGCGGCCTGCAGAAGGTGTGTGAATGTGTGAATGTTTG AGGATGCGGGAAGATGTTCCCCTTCGGCTACATCAGAAACTTGAGCACTG ATGTAGATAAGACAGCAGTAGACAGAGAAGCTGCTCATGGTAGTGCCAGA CGGCAATGCAAGAGGACACGTGTCGCACACCAATGAATCAATGCATCCGG GGTAGCAATTCGCGGTTTACACCGACTGCTGGGATTCCTCCAGACAAATT CTATCGCCATCGGCAGCTACTACTGCTGTACACGGTCGTCGTGTGCCGTG CGGTTCTTCCGACACTCTCCGCAAATGGCACAAATTGAAGTACGGTATAG TTGCCGGCTTCAAAGTAATGCGGTTTCACCTCCCTCCGTTGCAAGCAACA CTATGTGCAGTAACACCAGCAATGGGCGATATCTGTGGTATATGGTAAAT CGACAGATGTGAAACAGATGGGCTGATAGGCAATGAGGAGAAAAGAGGCA GTCGCGGTATGTAGGACAAGGACCAAGAGGGACGAACCAACCTGTATATA GCAGTGACCGGCCCACCTACGGTTCTAGTGAGTGAATCCGTGAGTAACCT GTTCCCGCGACGGCAAACAAAGTTGATCAACAAAACTTCGAACGTTTTCG CAGCGCAGAAATGAACCCATGCTACCGTGGTTGCTACTCCTAATTATTAC CAATGCGGCATGGAGGAGACGCGTGTCTAGGAGAGGGATTAGGGAGATGG CCCGCGTTGAGAGGAGCACAAAGAAGAGTGCGCACTACACAAGTGCACAC ATGAGGAGCTCTGCACGCTTTGTGAGGCGTTCCCGAACAGTGGAACAGCT CATGGAGTTCTTGGAAAAAGAGGTCAAAACCAATTCTCTCGACGTCAACA CAAGAGCAAGAACAGCGCACAGCACTCGCCACTTCATACTGCTTTATTTA CGGTAGCACCGAAGCGACTCACCCCACTCCTTCCTACCGCTGTCATCGAT CTGCGGATCACAGGGCTTCACCCCCCGGGGCCACCACCACACCCGGCAAA AAAAAACAAAAAAAAAACATGCCGCTCGGGTTCGTAAACGGCGGCGGCGG CAACAGCCCGGAGGAGCTCTTCCGGAGCATCCCGCCCGTCTCCAAGGTGC TGATAGTGGGGATGGTGGGCACGATGTTCTCCATCGTGCTGGGCGTTTGC TCCCCCTATGAGTACGCGCTTTCGTGGCCGCTGGTCTGGAACAAGTTCCA CCTGTGGCGGCTCTTCACTTCGGGCATCTTCCCGGGAGAGCCAGGCTACG GCGCCCTCATGTCGATGTTCTCCATCGGAATGTTCTCGATGAGGTAGGTG GGTTTGCCGCCAGGAAAATAGTTTTTTTTGGCACGGGTATGCGCGGTGAT GGATTTCCGTTGGACATCTCTCGTAGTGGTCCTTTTATATGAAGGCATGG AGTCACGCGGCAAGCAAGCCTGTTCGGCCGTTGTTTGTGCGTGTCAGGCC CGAGTCTGTCTCGAGTCCAAATTCGTACACCTCCCTCTTGTTATTGCGAT TGAGCACCGCATGTTTTTCGCGGAGAAGGGTTATTGGTTAGGTGGTAACC CATGCATGGCCTGTAATGTAAGGCACAGCAGTGATGGCATGGTATATCGC TTTCGCTGTTGTGCGGATGAGACGCATGCCAACGAGGCTTGTTTCGGAGG TTATGAGCACCTCCTCAGCAAATACTCAGAAAACTGATTGCGGGAAGGTT CGACCGACCCATCTCGCTGCTCGCGCGCACGCGCGCGTGTGTGTATGTGG GCCGCCTCAAATTTGAAGCCGCAGTAGACGAACGAAAGTAAAAGAGTGAG ATCACCGTGCTTTCGGTGTGCGTGCGCGTCACCTGTGCCTGATACCGTAC TTATTCTTTTTAGGGTTTAGCCTTGCATTGGTCGACAATGAGAAGGCGCT TGTTGAGTTGGTTTTGCGTGGTGGTGCGACACTGTATGTGGCGACTGTTG TTCATCGACAGTATGCAGAGGGCCACCGAGCTACTGTTTAGTACACGTGT GTTGTACCAGAGGCAACTCGGCGCAACGATAATAGTCCCGACATCCCGGG GAAGAAGGACACTCAGACTAGGGTAGTACTGTAGCAGAGCCTCCGACACA TCGCAAGGACGCAAGGACCACTCTGCAGTTGATTTTTTTCCGTGAAGGTG TTTGTTTTACTGACTGTGAGCTGCATCGGTCCTTGCTCCTGCTGTGTATC GCACATGACTGCTGTGATTGCCGTGCCAATACTGACCGTGCGTTCTGCCG CATGCACGGACGTGTGCGCCGAACGGGCAGGTACGAGAAGGACGGGTTCA GCATGGGCGGCGGGGGCGGCAGCGCTGACTACGCGTACATGCTCCTCTTC GGCTTCGTGTGCATCGAGGCCTCGCTGCTACTGCTCTTCTACCAGCCCTT TATGATCTTTACGGAGGCGATCATGTTCTACATCTGCTACGTCTGGAGCC GGAAAAATCCCGGCATGTCGGTCAGCTTCTGGGGCATTCTCATAAACGCT CTGTACGTCCCCTGGGTGATGATCGCGATGAGGTATGTACGAGCGCGTTG GTTTTGCTCGCGATTTCACTTCCATGATTGGGCGTGTGAGGGTGACGTGG GCACAAGATGATTTAGATTTCTTTCTATTTCGCCGTTTCAGTCGGTACTC CTCGACCCCACTATGTGGCAGGCCAGTGGTCGTGCGTATCCTATTCTCAT CTCACGTGTGTACAGGTACATGTTTTGCACGACGCACGCGTGACTGCTGT GCGCCGTTTGAGTCTGGCGACGTTCGTCTCCCTCTAGCGATTCGGCATTC CCCGTGGTGGGAATCTTCCAGCTCCCCGTCTCTGCTTGCGGTACATATTT TCTAGTCTTTTTGATGTTGAGCCTTTGGCGTCCATGGCGCTTCAAGGTTT CGTCTGTCTCAAAAACTTGTTTAATCCCCGTGGTATTGTGTGTGTGCGTT TGAATTAGCATCGACCGCGCTAACAGGCTGACCGACAATAATGACAATAC TTCAGTTTATATTGGTACCGACTCCAACTTCGTCGAAAGCACGTCGACCA CTACCGCAAGTTGAGGGAAGCAGGAAGAGGTACATAGTCAAGCCACCGAA GAGCCATCTTCGTCGCACTCATCTCTCCATCCGTGTGTGCTTGCTTGCTT GCCGTAGGGTGGTTCTCGGCTCGAGCATCTTCATGGCCCTCCTCGGCATC GCGGTAGGCCATCTCTTCTACTTCCTCGTGGACGTGCTGCCGGACCTGCA CGACATCGATCTGCTCCAGACACCCCAGTTCCTGGTCAACATGCTGGGCT GGGGCCGCGAAGGATCGGGCGTCACGATGCAAGCAGGTGGTGGCGGGGCG GCGGCGGGTGCTAGGGCAGGGGCTGCCGGGATGCCCGCCCCGGGTGCCGT TCGACCGCCGCGGGACATCCCACGAACCGGGGGAGGGTCGGGTTGGGGGA CCGGGAGGACGCTAGGCTCTTCCTGACCTGACCTCGAACAACCCACCGAA GAAAAGCGAGCCTTTCGCTAGTAGTTCAGATTGTGTGGCAGATTGCCGTT TTGAATAGTGAAATGTTCGGGCCTACATGGTGTAACATTCCGTGTACGCA TGGTGGGGGGGTGAGCACTCTTGTATTGCCTCTTGTCGGGAACGATGTCT TCCGTATATCGCGCTGCGTGGAATCCGGTCGAGGGAGTGTCGCCACTCGT GGTTCGAGGGTCTGATGAGGGTTGAGAAACTCTAGGCGTGTCCCACGGGG AATGCCTTCTGTAATCTTGAGAATAAAGGGACTCTCTTGGACAAGGCTCA ATTGTTTTGTTGCGGGGAGCGCCGGTGGGCGAAGCTTGGAAACGATTGAA ATGATGGTCGCTGGCGTGTTTCGTCTTGAAAGGGTGGGCGTTCATTCATG TACGGTCTCGTTTCATTTCGTGTGTATTCTAATCTAGAAAAAAAAGTGGT CTTGCTAGCGGGGGTAGTTATCAACGTTGTCCCTTCGTGTCCGCTACAGC CGGTCAGAGTCAGCCCTTGTGGCTTCCCACTCAGTCACGCGGCTTGCTTA GTTTCTCGGCTTATGAGGCGGGGCGGAAGCACTTCGGGACCAAGAGGTTT TATAGATCAAGACGGAGATA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig91:21573..25742-

>mRNA_E-siliculosus-1a_M_contig91.17184.1 ID=mRNA_E-siliculosus-1a_M_contig91.17184.1|Name=mRNA_E-siliculosus-1a_M_contig91.17184.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1692bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:21573..25742- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCGCTCGGGTTCGTAAACGGCGGCGGCGGCAACAGCCCGGAGGAGCT
CTTCCGGAGCATCCCGCCCGTCTCCAAGGTGCTGATAGTGGGGATGGTGG
GCACGATGTTCTCCATCGTGCTGGGCGTTTGCTCCCCCTATGAGTACGCG
CTTTCGTGGCCGCTGGTCTGGAACAAGTTCCACCTGTGGCGGCTCTTCAC
TTCGGGCATCTTCCCGGGAGAGCCAGGCTACGGCGCCCTCATGTCGATGT
TCTCCATCGGAATGTTCTCGATGAGATGCCGCTCGGGTTCGTAAACGGCG
GCGGCGGCAACAGCCCGGAGGAGCTCTTCCGGAGCATCCCGCCCGTCTCC
AAGGTGCTGATAGTGGGGATGGTGGGCACGATGTTCTCCATCGTGCTGGG
CGTTTGCTCCCCCTATGAGTACGCGCTTTCGTGGCCGCTGGTCTGGAACA
AGTTCCACCTGTGGCGGCTCTTCACTTCGGGCATCTTCCCGGGAGAGCCA
GGCTACGGCGCCCTCATGTCGATGTTCTCCATCGGAATGTTCTCGATGAG
GTACGAGAAGGACGGGTTCAGCATGGGCGGCGGGGGCGGCAGCGCTGACT
ACGCGTACATGCTCCTCTTCGGCTTCGTGTGCATCGAGGCCTCGCTGCTA
CTGCTCTTCTACCAGCCCTTTATGATCTTTACGGAGGCGATCATGTTCTA
CATCTGCTACGTCTGGAGCCGGAAAAATCCCGGCATGTCGGTCAGCTTCT
GGGGCATTCTCATAAACGCTCTGTACGTCCCCTGGGTGATGATCGCGATG
AGGTACGAGAAGGACGGGTTCAGCATGGGCGGCGGGGGCGGCAGCGCTGA
CTACGCGTACATGCTCCTCTTCGGCTTCGTGTGCATCGAGGCCTCGCTGC
TACTGCTCTTCTACCAGCCCTTTATGATCTTTACGGAGGCGATCATGTTC
TACATCTGCTACGTCTGGAGCCGGAAAAATCCCGGCATGTCGGTCAGCTT
CTGGGGCATTCTCATAAACGCTCTGTACGTCCCCTGGGTGATGATCGCGA
TGAGGGTGGTTCTCGGCTCGAGCATCTTCATGGCCCTCCTCGGCATCGCG
GTAGGCCATCTCTTCTACTTCCTCGTGGACGTGCTGCCGGACCTGCACGA
CATCGATCTGCTCCAGACACCCCAGTTCCTGGTCAACATGCTGGGCTGGG
GCCGCGAAGGATCGGGCGTCACGATGCAAGCAGGTGGTGGCGGGGCGGCG
GCGGGTGCTAGGGCAGGGGCTGCCGGGATGCCCGCCCCGGGTGCCGTTCG
ACCGCCGCGGGACATCCCACGAACCGGGGGAGGGTCGGGTTGGGGGACCG
GGAGGACGCTAGGCTCTTCCTGAGGTGGTTCTCGGCTCGAGCATCTTCAT
GGCCCTCCTCGGCATCGCGGTAGGCCATCTCTTCTACTTCCTCGTGGACG
TGCTGCCGGACCTGCACGACATCGATCTGCTCCAGACACCCCAGTTCCTG
GTCAACATGCTGGGCTGGGGCCGCGAAGGATCGGGCGTCACGATGCAAGC
AGGTGGTGGCGGGGCGGCGGCGGGTGCTAGGGCAGGGGCTGCCGGGATGC
CCGCCCCGGGTGCCGTTCGACCGCCGCGGGACATCCCACGAACCGGGGGA
GGGTCGGGTTGGGGGACCGGGAGGACGCTAGGCTCTTCCTGA
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