mRNA_E-siliculosus-1a_M_contig91.17181.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig91.17181.1
Unique NamemRNA_E-siliculosus-1a_M_contig91.17181.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17181.1 vs. uniprot
Match: D7FNT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNT4_ECTSI)

HSP 1 Score: 445 bits (1145), Expect = 1.930e-143
Identity = 229/231 (99.13%), Postives = 230/231 (99.57%), Query Frame = 2 
Query: 2483 ASDEVEQRSPVAGSLLRALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPATSMLVYQDGKTLARVGVMGESADIRDAPILRKCIGEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSLREAVVA 3175
            ASDEVEQRSPVAGSL+RALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPATSMLVYQDGKTLARVGVMGESADIRDAPILRKCI EGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSLREAVVA
Sbjct:   62 ASDEVEQRSPVAGSLIRALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPATSMLVYQDGKTLARVGVMGESADIRDAPILRKCISEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSLREAVVA 292
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17181.1 vs. uniprot
Match: A0A835YLX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLX2_9STRA)

HSP 1 Score: 209 bits (533), Expect = 6.110e-57
Identity = 119/219 (54.34%), Postives = 146/219 (66.67%), Query Frame = 2 
Query: 2516 AGSLLRALTGPYVSLGVGVGILLAVLANRIA-TPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPAT-SMLVYQDGKTLARVGVMGESADIRDA--PILRKCIGEG-RDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSL 3157
            +G ++R LTG   SL  G+  L A+L NR+A TP L DSQARTDIL +IASGGL+ NGVYLLDL +K A+ VTLVGTF QE    L+      L+WL ESL+L  PAT S+LV+ DG+T AR GVMG  A   DA  PI+ K + E  R  +E YL  LQ LPGK+EF YLP NCQ V++  VL G   VVVG ++ARA+TP+DI WMK    +A   L
Sbjct:   84 SGGIIRQLTGSNFSLAAGLLGLAAILINRLALTPYLYDSQARTDILALIASGGLIMNGVYLLDLDIKVADSVTLVGTFEQELDPTLSAEQAAQLRWLCESLILAKPATASVLVHVDGRTRARYGVMGGGATTVDAGAPIMAKALREAARSDKEVYLPVLQNLPGKIEFTYLPANCQGVVIQGVLGGRGAVVVGASQARAYTPRDIAWMKAASERATALL 302
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17181.1 vs. uniprot
Match: R1DVS8_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DVS8_EMIHU)

HSP 1 Score: 145 bits (367), Expect = 2.880e-35
Identity = 91/243 (37.45%), Postives = 137/243 (56.38%), Query Frame = 2 
Query: 2459 PPPPCNFQASDEVEQR--SPVAGSLLRALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPG-ARRDLQWLGESLLLVSPATSMLVYQ-DGKTLARVGVM------GESADIRDAPILRKCIGEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSL 3157
            PPPP        +  R  SP A  LLR L  P VSL  G  +LLA++ NR+AT EL++SQ+R D++  +    L+ +G+  L +   E E V+L G    ++ D +  G ARR+L W  ++L     A+S+ +++  G TLA  G++        +A +   P+L+KC G    G  +YL ALQ LPG+VEF Y PE  QA+LM+P+   S VVV+G +R RAF  +D+ W + +  +   +L
Sbjct:   14 PPPPIARPCGVALTPRCGSPHASGLLRRLRSPEVSLVAGGSLLLALVVNRLATEELLNSQSRADLIATVGPVLLMLDGLSNLAITPAEPEPVSLAGGVAVDWLDPVVSGDARRELAWATDALGAGLGASSVAIWRAGGGTLAACGLLTPRAAASPAAAVVPGPLLQKCAGSAT-GAPEYLPALQLLPGRVEFSYFPEATQALLMVPLGGRSGVVVLGADRKRAFGAEDVAWARAIAGRLGAAL 255
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17181.1 vs. uniprot
Match: UPI0019F7C38E (Cofactor assembly of complex C subunit B n=1 Tax=Pleurocapsales cyanobacterium LEGE 10410 TaxID=1828828 RepID=UPI0019F7C38E)

HSP 1 Score: 140 bits (354), Expect = 4.220e-34
Identity = 79/213 (37.09%), Postives = 126/213 (59.15%), Query Frame = 2 
Query: 2525 LLRALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPATSMLVYQDGKTLARVGVMGESADIRDAPILRKCIGEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSLRE 3163
            +LR L  P+ + G+G G LL  L NR+ T ++ DSQAR+D LGVI    L+  G+    ++ K  + VTL+G    E+A +L+  A+ +L W    LL  +   S++VY DG T+ R GV+G+++ ++   IL + + + +     YL  L   PGKVEFDYLPEN Q V+  P+     V+++G N  R++T KD  W++G+ ++ A++L  
Sbjct:    9 ILRLL--PFFAGGLG-GFLL--LINRLLTAQITDSQARSDALGVIEGAVLILVGLLWQQIQAKTPDTVTLIGETGLEFASELSEVAKTELAWASHLLLTNTVTRSLVVYYDGITMLRRGVLGKNSQVKPGAILERALSKAKP---VYLVNLNLYPGKVEFDYLPENTQGVICQPI-GNKGVLILGANAPRSYTKKDEQWIEGIADKLAVTLNS 212
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17181.1 vs. uniprot
Match: L8LI26_9CHRO (Uncharacterized protein n=1 Tax=Gloeocapsa sp. PCC 73106 TaxID=102232 RepID=L8LI26_9CHRO)

HSP 1 Score: 140 bits (353), Expect = 5.270e-34
Identity = 76/213 (35.68%), Postives = 127/213 (59.62%), Query Frame = 2 
Query: 2525 LLRALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPATSMLVYQDGKTLARVGVMGESADIRDAPILRKCIGEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSLRE 3163
            +LR L  P VS G+G  +LL    NR++T EL +SQAR+D+LGVI S  L+  G+    ++ +  E VTL+G    E    L    + +L W    LL  +   S+++Y +G+ L R G++G++A ++  PI+ +C+   +  +  YL +L+  PG +EFDYLPEN Q V+  P L    V+++G N  R++T +D  W++G+ ++ A++L +
Sbjct:    9 ILRLL--PLVSGGLGGALLLF---NRLSTLELTNSQARSDVLGVILSALLILVGLLWQQIQSRNPESVTLIGEEGFELDPQLPDSVKTELAWASHLLLTNTVTRSVVIYYEGRVLLRRGILGKTAQVKPGPIIHRCL---KTSKPVYLVSLKLYPGGIEFDYLPENTQGVICQP-LGKEGVMILGANAPRSYTKQDETWIEGIADKLAITLAQ 212
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17181.1 vs. uniprot
Match: A0A8J6RIB7_9CYAN (Cofactor assembly of complex C subunit B n=2 Tax=Cyanobacteria/Melainabacteria group TaxID=1798711 RepID=A0A8J6RIB7_9CYAN)

HSP 1 Score: 140 bits (352), Expect = 1.100e-33
Identity = 80/206 (38.83%), Postives = 120/206 (58.25%), Query Frame = 2 
Query: 2546 PYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPATSMLVYQDGKTLARVGVMGESADIRDAPILRKCIGEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSLRE 3163
            P V+ G+G G LL  L NR+ TP L +SQAR+D++GVI S  L+  G+    ++    E VTL+G    E  D L   A+ +L W    LL  +   S++VY+ GKTL R G++   A++   PILR+ +     G+  YL  L   PG+VEFDYLPEN Q V+  P+ +G A+++   N  R++T +D  W++G+ ++   SL E
Sbjct:   14 PLVTGGLG-GTLL--LINRVLTPALTESQARSDVMGVILSALLILTGLLWQRVQPTLPEAVTLIGAEGLELDDALPDAAKTELAWASHLLLTNTVTRSVVVYRQGKTLLRRGILAPKAEVTPGPILRRVL---ETGKAVYLVKLSIYPGRVEFDYLPENTQGVICQPMGQGGALILAA-NAPRSYTRQDEAWIEGIADKLGHSLGE 212
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17181.1 vs. uniprot
Match: A0A1Z4RSL5_9CHRO (Uncharacterized protein n=1 Tax=Chondrocystis sp. NIES-4102 TaxID=2005460 RepID=A0A1Z4RSL5_9CHRO)

HSP 1 Score: 137 bits (346), Expect = 5.270e-33
Identity = 80/213 (37.56%), Postives = 129/213 (60.56%), Query Frame = 2 
Query: 2525 LLRALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPATSMLVYQDGKTLARVGVMGESADIRDAPILRKCIGEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGS-AVVVVGTNRARAFTPKDIVWMKGLCNQAALSLR 3160
            +LR L  P+ + GV  G+LL  L NR+ T +L DSQAR+D LGVI    L+  G+    ++ K  + VTL+G    E   +L   A+ +L W    L+  +   S++VY  GKT+ R GV+G+++ ++   I+++ + +G+     YL  L   PGKVEFDYLPEN Q V+  P+  GS  V+++G N  R++T +D VW++G+ ++ A++L+
Sbjct:    9 ILRLL--PFFAGGVS-GLLL--LVNRLLTTQLTDSQARSDALGVIEGAVLILVGLLWQQIQAKPPDTVTLIGETGLELDSELPQTAKLELAWASHLLITNTVTRSLVVYYAGKTILRRGVLGKNSQVKPGAIVQRVLTQGKP---VYLVNLNLYPGKVEFDYLPENTQGVICQPI--GSLGVLILGANAPRSYTKQDEVWIEGIADKLAVTLK 211
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17181.1 vs. uniprot
Match: UPI0016848F88 (cofactor assembly of complex C subunit B n=1 Tax=Richelia sinica TaxID=1357545 RepID=UPI0016848F88)

HSP 1 Score: 137 bits (344), Expect = 9.220e-33
Identity = 79/218 (36.24%), Postives = 122/218 (55.96%), Query Frame = 2 
Query: 2504 RSPVAGSLLRALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPATSMLVYQDGKTLARVGVMGESADIRDAPILRKCIGEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSL 3157
            + P    +LR L  P    G+G  +LL    NR+ TPEL DSQAR D+LGVI S  L+  G+    ++ +  E V L+G      A++L    + +L W    LL  +   S++VY  GK L R G++G  ++I   PI+++ +   +     YL ALQ  PGK+EFDYLPEN Q V+  P+ E   V+++G N  R++T +D  W+  + ++ A++L
Sbjct:    2 KKPDPNGVLRLL--PLAVGGLGATLLLV---NRLLTPELTDSQARGDVLGVILSAVLILTGLIWQQVQPRSPEVVELMGEEGFFLAENLPEAVKTELAWASHILLTNTVTRSLVVYYQGKVLLRRGILGSKSEITPGPIVQRVLATKKP---VYLVALQIYPGKIEFDYLPENTQGVICQPIGE-QGVIILGANAPRSYTKQDENWISAISDKLAVTL 210
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17181.1 vs. uniprot
Match: UPI00034BD926 (cofactor assembly of complex C subunit B n=1 Tax=Pleurocapsa sp. PCC 7319 TaxID=118161 RepID=UPI00034BD926)

HSP 1 Score: 137 bits (344), Expect = 9.490e-33
Identity = 78/217 (35.94%), Postives = 131/217 (60.37%), Query Frame = 2 
Query: 2516 AGSLLRALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPATSMLVYQDGKTLARVGVMGESADIRDAPILRKCIGEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSLREA 3166
            A  +LR L  P  + G+G G+LL  L NR+ T +L DSQAR+D LG+I    L+  G+    ++ +  + VTLVG    E+A +L+  A+ +L W  + LL  +   S++VY D +T+ R GV+GE++ ++   I+++ I + +     YL  L   PGKVEFDYLPEN Q ++  P+ +   V+++G N  R++T +D  W++G+ ++ A++L  +
Sbjct:    6 ANYILRLL--PIFAGGLG-GLLL--LINRLLTIQLTDSQARSDALGIIEGAVLILVGLLWQQIQARTPDTVTLVGETGLEFAPELSEVAKTELAWASQLLLTNTVTRSLVVYYDDQTILRRGVLGENSQVKPGAIVQRVISKNKP---VYLVNLNLYPGKVEFDYLPENTQGLICQPIGD-RGVLILGANAPRSYTKQDEKWIEGIADKLAVTLANS 213
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17181.1 vs. uniprot
Match: A0A2T1CRW1_9CYAN (Cofactor assembly of complex C subunit B n=1 Tax=Pleurocapsa sp. CCALA 161 TaxID=2107688 RepID=A0A2T1CRW1_9CYAN)

HSP 1 Score: 136 bits (343), Expect = 1.220e-32
Identity = 80/214 (37.38%), Postives = 124/214 (57.94%), Query Frame = 2 
Query: 2516 AGSLLRALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPATSMLVYQDGKTLARVGVMGESADIRDAPILRKCIGEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSL 3157
            A  +LR L  P+ + G+G G LL  L NR+ T ++ DSQAR+D LGVI    L+  G+    ++ +  + V L+G    E  + L+  A+ +L W    LL  +   S+LVY DGKT+ R GV G+++ ++   IL + I +G+     YL  L   PGK+EFDYLPEN Q V+  P+    A+++ G N  R++T KD  W+ G+ ++ A++L
Sbjct:    6 ANRILRLL--PFFAGGLG-GFLL--LINRLLTAQITDSQARSDALGVIEGAVLILVGLLWQQIQGRTPDTVDLIGETGLELDESLSESAQTELAWASHLLLTNTVTRSLLVYYDGKTILRRGVFGKNSQVKPGAILERAIAKGKP---VYLVNLSLYPGKLEFDYLPENTQGVICQPIGTQGALIL-GANAPRSYTKKDEQWIAGIADKLAVTL 210
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig91.17181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNT4_ECTSI1.930e-14399.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLX2_9STRA6.110e-5754.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
R1DVS8_EMIHU2.880e-3537.45Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
UPI0019F7C38E4.220e-3437.09Cofactor assembly of complex C subunit B n=1 Tax=P... [more]
L8LI26_9CHRO5.270e-3435.68Uncharacterized protein n=1 Tax=Gloeocapsa sp. PCC... [more]
A0A8J6RIB7_9CYAN1.100e-3338.83Cofactor assembly of complex C subunit B n=2 Tax=C... [more]
A0A1Z4RSL5_9CHRO5.270e-3337.56Uncharacterized protein n=1 Tax=Chondrocystis sp. ... [more]
UPI0016848F889.220e-3336.24cofactor assembly of complex C subunit B n=1 Tax=R... [more]
UPI00034BD9269.490e-3335.94cofactor assembly of complex C subunit B n=1 Tax=P... [more]
A0A2T1CRW1_9CYAN1.220e-3237.38Cofactor assembly of complex C subunit B n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig91contigE-siliculosus-1a_M_contig91:8197..13440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size927
Model size3813
Exons4
Ec32 orthologEc-12_003460.1
Ec32 ortholog descriptionProtein of unknown function DUF2930
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs28KGG@1,2QSXP@2759
EggNOG free text desc.Cofactor assembly of complex C subunit B, CCB2/CCB4
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0009987,GO:0010190,GO:0016043,GO:0017004,GO:0022607,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0071840
Preferred nameCCB4
Seed eggNOG ortholog2880.D7FNT4
Seed ortholog evalue9e-122
Seed ortholog score443.4
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig91.17181.1prot_E-siliculosus-1a_M_contig91.17181.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig91 8832..11189 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936436.384114-UTR-E-siliculosus-1a_M_contig91:8196..88311622936436.384114-UTR-E-siliculosus-1a_M_contig91:8196..8831Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 8197..8831 -
1696251077.7822776-UTR-E-siliculosus-1a_M_contig91:8196..88311696251077.7822776-UTR-E-siliculosus-1a_M_contig91:8196..8831Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 8197..8831 -
1622936436.46755-UTR-E-siliculosus-1a_M_contig91:11189..134401622936436.46755-UTR-E-siliculosus-1a_M_contig91:11189..13440Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 11190..13440 -
1696251077.8406398-UTR-E-siliculosus-1a_M_contig91:11189..134401696251077.8406398-UTR-E-siliculosus-1a_M_contig91:11189..13440Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 11190..13440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936436.3977678-CDS-E-siliculosus-1a_M_contig91:8831..90291622936436.3977678-CDS-E-siliculosus-1a_M_contig91:8831..9029Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 8832..9029 -
1696251077.799375-CDS-E-siliculosus-1a_M_contig91:8831..90291696251077.799375-CDS-E-siliculosus-1a_M_contig91:8831..9029Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 8832..9029 -
1622936436.4157343-CDS-E-siliculosus-1a_M_contig91:9613..97721622936436.4157343-CDS-E-siliculosus-1a_M_contig91:9613..9772Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 9614..9772 -
1696251077.8095074-CDS-E-siliculosus-1a_M_contig91:9613..97721696251077.8095074-CDS-E-siliculosus-1a_M_contig91:9613..9772Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 9614..9772 -
1622936436.4296603-CDS-E-siliculosus-1a_M_contig91:10123..102461622936436.4296603-CDS-E-siliculosus-1a_M_contig91:10123..10246Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 10124..10246 -
1696251077.8201435-CDS-E-siliculosus-1a_M_contig91:10123..102461696251077.8201435-CDS-E-siliculosus-1a_M_contig91:10123..10246Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 10124..10246 -
1622936436.449143-CDS-E-siliculosus-1a_M_contig91:10742..111891622936436.449143-CDS-E-siliculosus-1a_M_contig91:10742..11189Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 10743..11189 -
1696251077.8305724-CDS-E-siliculosus-1a_M_contig91:10742..111891696251077.8305724-CDS-E-siliculosus-1a_M_contig91:10742..11189Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 10743..11189 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig91.17181.1

>prot_E-siliculosus-1a_M_contig91.17181.1 ID=prot_E-siliculosus-1a_M_contig91.17181.1|Name=mRNA_E-siliculosus-1a_M_contig91.17181.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=309bp
MFPTTALWKLLPGLLLAPYPGEQKMVCSASVLQLHSLNARVFSNGWLPCV
SPTMPMDNFRSTVNLSLSLPPPPCNFQASDEVEQRSPVAGSLLRALTGPY
VSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLD
LKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPATSMLVY
QDGKTLARVGVMGESADIRDAPILRKCIGEGRDGREQYLAALQTLPGKVE
FDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAAL
SLREAVVA*
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mRNA from alignment at E-siliculosus-1a_M_contig91:8197..13440-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig91.17181.1 ID=mRNA_E-siliculosus-1a_M_contig91.17181.1|Name=mRNA_E-siliculosus-1a_M_contig91.17181.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5244bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:8197..13440- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CGACATACACTACTGCTGTAGCGTCGACCGACACATGATCGGCACCCCCG
ACACAGGGGACGAAGGTTGCCGTTCTAGTCTCTAGCAGGTAATCATGGCG
ATAAAGGCCTGTATAGTAGCAGGCTTGGCGGTGGTGCAATGGACTCCGGC
ACAGGCATTCGGAGCAGTTTCTCACGTCAGCTCTGCTCTACGACCGATGT
CGTGTCGGGCAGTGGCCGACCCCACGAGTCACAACAACAAGCGGAGCGTC
TCTAGACGACCGAGGGCTGTCACCATGGTGGGTACGATGTTGGGTGCTGT
CTTTAACCCTCCTGTCTTGGGGCGTTTAGTTCGAAAGACATTGGGGCGTG
TGCTGAAGGAAAGCAGCCACTTTCCTGTTGTAGCACCAACTGCAAAAGGG
TAGCAGCAACTTCTACTACAAGAATGGGTAGTCTTTCCGTGGTACATGCC
GTACTGCTGTACCTGCTGGATGGAGCTAACTTGGCGATCGGTCTCTGTGG
GTGATATGCATTCTGGCTTTGCTGCATATACTGGAGTGTGAGGTCCCAAA
ACGCCGTCGATGGTGCTAGCCATAGCAATGATATTCACCGTTGCATGCGT
ATTTTTTCAGCATGTCGGGTCGTCCGGAATCATCAAGGTCAAATGGCACA
ATCTTCCAAATACGAGTACCTTGTAGTATAGCAGGAGACATGATTTTACA
GAACGAGCTACATGTATGATGCTACAACGATGGGGTGCCCTGAATATATC
GCCGGTATGCATACGTGCCCGGCGCATCGATGGGCGATATTCAATGTACA
GAATGACTTAGTGATTTCGTCCGTGCCCAGCAATCCACCCACCCAGGCCA
CCGCGCTAATCGTTGTTGACGCCCCCCCACTGATGTAGCTGTGTACCACG
TGCAGTCTACAAGCAAAGTCAAGAGTTCACCCGCTCTACTTACTGCTTGC
AGCACACCCACACCGGTGTACCAGTCGTCTTTCATCGTGGCCATGTATTG
TATAATGGAGCAATTGTTTAGTGTTGCCACTTTACCCCTACGCCATTGGC
ACGGGCACGTTTTTTGTAATCCGTACGTCACAATACTTCTGGAGCACACC
CAGAGCGTCCCTGAACACCCCGAGCACAGCGGGTGATTTGCTGCTTGCGT
GGGTCCTCCGGTCCGTTGATGTTGTGACCAATATGCACATGCTACAGAGC
GGAATGACACACCTAGGCTACAGCGGCATGGGCACTGCTGTGTAAAACGA
CAAGCGTGGCCGATGCTACAAAAGTATTTTGAGTCGAACATTGCCCCCCC
CCCCCTGAACACCAGCGCTGCAAAAAATGAGCATACTTTCTGTCTCTAGG
CGACATGGAGGCATCCCGTGGGATTGAGAAATCCACCGCTCTATGCGACA
GTTCCCAGAACTAGCAAGCGGAGAGGCTGCACAGAACAACACAGAAAGAA
GCCAGCAGCATTCTTTGTTATCGAGCCTGTGCTCATGCCGTCAACCCGAA
TACCTCGTACTCGATTTCACGCGTGCAGCATTGGCACTGCAGTATCACTC
CTCCTCCTCCTCTGCTGCTGCTGCTGCTGCCGCTGTGTTGTTCGTGATTG
AGGCCACTGTACCTGCTGTACGCCCAGAGAGCTGAGAAAGCTAAAGTTTA
CCCGCCTGCCTGGCCATCAGGACTTCATTCTTAGGGAAACGAGACCTTGC
TCAACATTTTCACGCATTGCACCCGCAATAGGTGGTTATGTTATGTTGCT
TACCTTTGGAGACTTCCCTCTAGGGTTGCCTAGGCGTTTGCCCCTCTTCT
TAGCGGTTTGGAGGGCCAGCGCGTGGCGGGCGATTGTTTTCACCTGACGT
TTTGTGCGTCCCACGCACTCTCACGTGGTAGGATCGTTTACTATCAACGT
TTGTGCGTCCCCACGCACTCACCTGGTATACGTGCGCCTACGCCGGGCCC
GTTGAGACAAGCAAGCTGATTGGCCGACGCAAGTGCGCAGAGTTTGACAA
CAAACAGGCCAGCAGGGGAGACGAGAATCGACCGCTGCAAGCATGCCTTG
GTGCAGTTTGTCAGGAGTGAACGTTTGGCCCTCGAAAGGCTAGCCCCGGG
CCTCGCCGCACCGAACAAGCTACGCGACTGTTGACGCCGAGAGCCGCGGT
TCCTGGATTTCGATGTCCCAGACCTGGCTGAAGAAAGCCCACGGAACGAA
CGTTATTGTCAGCTGGCCTACATGTGACGCTCCATCTTGCGTGTCGCTGT
CATGTTTCCCACGACGGCCCTTTGGAAGCTTTTGCCTGGTCTGCTCTTGG
CACCGTACCCCGGTGAACAAAAAATGGTTTGTAGCGCGAGTGTCTTGCAG
CTACACTCGCTCAATGCTCGTGTTTTTTCAAACGGTTGGCTGCCTTGCGT
GTCCCCCACCATGCCGATGGACAATTTTAGGTCCACCGTTAACTTGAGCC
TGTCTCTGCCCCCCCCACCTTGCAATTTCCAGGCCAGCGACGAGGTCGAG
CAACGCTCCCCGGTGGCCGGGAGCCTTCTCCGAGCACTAACGGGCCCCTA
TGTTTCGCTCGGAGTTGGCGTTGGCATTCTGTTGGCCGTTCTGGCCAATC
GAATCGCCACTCCGGAGCTGGTCGATTCACAAGCTCGCACGGATATCCTC
GGGGTGATCGCGAGCGGGGGATTGGTTACGAACGGCGTTTACCTCTTGGT
GGGTGTAAAAAACTTTCGTGCCCGGCGATTGACTCCTGAGGCAACGCGGC
CACGAGAAAGAGTTGTAGCTAGGAGGTGTTCAAGCTCTCTTCGTCTTTTC
GATACAGATTCCTTTTCATTCGAGCTTCACACGCTACGGTGAAGTACAAA
TGTCTTCGCAGCGTAGGCAAGAACTCAGCTCCACACTTTCACCGTATTTG
TTGAAGACACGAGCATGCTGCGCTTGTCGTACACATCGGCTTATGCGAGG
ACACACTAGGTGCCTTGGTTGTGTCTTGGTTTTGTTAACACCCCTGGCGT
GTAGTGCCCACGTGCGTAGAACAGTGGTACTAACCACCATCCCAATGAGG
AACGTGACCCTGACTCTTGCGAGCTACTTCATAACAGAAGGCCGACCTCG
ATTCCCTCAACATGAATGCCCGAGTATCATAGTACTCTGGCTGCAGGCAC
CATCCATGATGATTGTTTCGTATTCCATATCGTTCGTCCGACAGGATTTG
AAGGTGAAGGAGGCGGAAGAAGTGACGCTGGTGGGCACGTTCGTGCAGGA
GTACGCCGACGATCTCGCTCCCGGCGCTAGGCGAGATTTGCAGTGGCTTG
GCGAGTCTTTGTTGTTGGTGAGTGAATTGGCGAGCGGCGACTGATCCTTC
CCGCGGAACGCGTCGCCGGTGTGCTTCGCGTAAGCGGCGTTCCCTATGAA
CGGTAGTTATCGTTGTAGGCATTGTGTAACGCCACACCACCATTGATGTA
TTAGATTGATTTGGGCTCCTCCCATGCTGCCCAGCCCCGTGGTATTGGTA
AAGGTACCCCCTTCCCCCTTGCCCCAGTGTGGCCGCAATGAGTGCTACTG
CCAAACTTTGCGCATCCGGAACTCAGAATTTCCGACTATGCAAGCGCCTA
TTCACTGTTCCATTGTTGCATTTTTCCCTCCTTCCTCCCCTGCCCCCCAA
ACGCGATCTCGGCAAAAGGTGTCGCCTGCAACATCAATGCTGGTTTACCA
GGATGGGAAGACGCTGGCGCGGGTTGGGGTGATGGGAGAGTCCGCCGACA
TACGGGACGCTCCTATTCTTAGAAAATGCATTGGTGAAGGACGCGATGGG
CGGGAACAGTACTTGGCCGCTCTCCAGGTTTGTTTTTCCGCTTGCCGTCT
TGTTTTTGTTTTGAATGTGCCCACCAGGCTGCCCACGTTCGTACGGTCTC
TTGGTTACATGGTGATACTATTCGCCCGATACTGGTTTCTGCAGCTGGTA
CCTCCAGGCTCAACATAGTGATCGCATCACATCGGAAGGTGTTCCGGCAT
ATGTACCAATCCACTAAAATCAGCACATTTTTTTGCTGCAGCCTGGGCAT
TGGTCTCTTGTAGCCACTTTTGCCGCGAGGAACGTTAAACAGGCCGTGAT
GTGGCTATCTCGTTCGCTTCGAGTGGGAAGCCGCTTGTTTGCCTCTTGAC
TTCGCGGGCACACCTGTGCAGACTGACTGCAAGCACAGCAGTGACATGCA
GGGCAGCTTATCCCTCTGGGCGTGTCTGTGCTTCTCGACGTTCTACCACA
TTCACGGTATATTCTGCAAGCGCTCCTGATTGCCGAGGAAAGCCGGGGGG
GGGGGTAACCAGCTTAGAGCAAACATCAACCATCGTCCTCGCCTCTCTCC
TTCGTATCTCGTCTTGTCACTAACGCTGTGCTCTCTTCGAATACGAACGC
CGTTCACGCAGACTCTTCCGGGAAAGGTCGAGTTCGACTATCTCCCGGAA
AATTGCCAGGCAGTGCTAATGCTGCCCGTTCTGGAGGGGTCGGCAGTCGT
CGTGGTAGGAACGAACCGGGCGCGCGCGTTCACGCCCAAGGACATCGTGT
GGATGAAGGGGCTTTGCAACCAAGCGGCATTGTCACTGCGGGAGGCGGTG
GTGGCTTGAATTTTGTACATGTGCTCCAAGCGTAGAATTGTTGTGGACGG
GTATGATTTGTTTCAGCGTGCTATCCCTCTGCTCTTGTGTACATACACGG
CCGCTGTTGGAGTTGGAGTTGGATCGGCGTAGGATTTGAACAGCGGACTC
AAAGAGTTTTGTGATTGTGTGTTTCGTGGCTACTGTTTTGAAACAGGCGG
CAAGACTTGCTGAGCCGACACGCGTCCTAGATTGATTTTTTGAAGCGTGG
TCGCCCCTACTGACAAAACTGCTTTGCTGGGCACGTTCCGGCTAGATTCG
ATGTGTCTGGTTCGCCTGGCGATGGTAACGTGGTCACCCCCCCAAATGAT
ACTGCTTTTGTATTGCTTATGTAGTAAAACGCATTCCAATGGAAAACGCG
AGTGGCTCATCGCCTTGCTGGCTTCGTCCCACACTTGATGCCACGTGGGA
CATCCAACACGCGGGGAACTTTCTCCTTCCAGTGGGACCAGTCCAGAAGA
CGGAGCTTGTTGTGGGCCTCGCAGAAGTCTATTTATGTATGTAGTTGGCA
ACCTAAACCTTGAGAAACCCTCTCTCTGTGGTGTTGTCTGTGTGGGGTCG
AAACGTGGAATTCGACTGTGGACGAAGAAAATTTGGTTGCCTAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig91:8197..13440-

>mRNA_E-siliculosus-1a_M_contig91.17181.1 ID=mRNA_E-siliculosus-1a_M_contig91.17181.1|Name=mRNA_E-siliculosus-1a_M_contig91.17181.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1854bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:8197..13440- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTTTCCCACGACGGCCCTTTGGAAGCTTTTGCCTGGTCTGCTCTTGGC
ACCGTACCCCGGTGAACAAAAAATGGTTTGTAGCGCGAGTGTCTTGCAGC
TACACTCGCTCAATGCTCGTGTTTTTTCAAACGGTTGGCTGCCTTGCGTG
TCCCCCACCATGCCGATGGACAATTTTAGGTCCACCGTTAACTTGAGCCT
GTCTCTGCCCCCCCCACCTTGCAATTTCCAGGCCAGCGACGAGGTCGAGC
AACGCTCCCCGGTGGCCGGGAGCCTTCTCCGAGCACTAACGGGCCCCTAT
GTTTCGCTCGGAGTTGGCGTTGGCATTCTGTTGGCCGTTCTGGCCAATCG
AATCGCCACTCCGGAGCTGGTCGATTCACAAGCTCGCACGGATATCCTCG
GGGTGATCGCGAGCGGGGGATTGGTTACGAACGGCGTTTACCTCTTGATG
TTTCCCACGACGGCCCTTTGGAAGCTTTTGCCTGGTCTGCTCTTGGCACC
GTACCCCGGTGAACAAAAAATGGTTTGTAGCGCGAGTGTCTTGCAGCTAC
ACTCGCTCAATGCTCGTGTTTTTTCAAACGGTTGGCTGCCTTGCGTGTCC
CCCACCATGCCGATGGACAATTTTAGGTCCACCGTTAACTTGAGCCTGTC
TCTGCCCCCCCCACCTTGCAATTTCCAGGCCAGCGACGAGGTCGAGCAAC
GCTCCCCGGTGGCCGGGAGCCTTCTCCGAGCACTAACGGGCCCCTATGTT
TCGCTCGGAGTTGGCGTTGGCATTCTGTTGGCCGTTCTGGCCAATCGAAT
CGCCACTCCGGAGCTGGTCGATTCACAAGCTCGCACGGATATCCTCGGGG
TGATCGCGAGCGGGGGATTGGTTACGAACGGCGTTTACCTCTTGGATTTG
AAGGTGAAGGAGGCGGAAGAAGTGACGCTGGTGGGCACGTTCGTGCAGGA
GTACGCCGACGATCTCGCTCCCGGCGCTAGGCGAGATTTGCAGTGGCTTG
GCGAGTCTTTGTTGTTGGATTTGAAGGTGAAGGAGGCGGAAGAAGTGACG
CTGGTGGGCACGTTCGTGCAGGAGTACGCCGACGATCTCGCTCCCGGCGC
TAGGCGAGATTTGCAGTGGCTTGGCGAGTCTTTGTTGTTGGTGTCGCCTG
CAACATCAATGCTGGTTTACCAGGATGGGAAGACGCTGGCGCGGGTTGGG
GTGATGGGAGAGTCCGCCGACATACGGGACGCTCCTATTCTTAGAAAATG
CATTGGTGAAGGACGCGATGGGCGGGAACAGTACTTGGCCGCTCTCCAGG
TGTCGCCTGCAACATCAATGCTGGTTTACCAGGATGGGAAGACGCTGGCG
CGGGTTGGGGTGATGGGAGAGTCCGCCGACATACGGGACGCTCCTATTCT
TAGAAAATGCATTGGTGAAGGACGCGATGGGCGGGAACAGTACTTGGCCG
CTCTCCAGACTCTTCCGGGAAAGGTCGAGTTCGACTATCTCCCGGAAAAT
TGCCAGGCAGTGCTAATGCTGCCCGTTCTGGAGGGGTCGGCAGTCGTCGT
GGTAGGAACGAACCGGGCGCGCGCGTTCACGCCCAAGGACATCGTGTGGA
TGAAGGGGCTTTGCAACCAAGCGGCATTGTCACTGCGGGAGGCGGTGGTG
GCTTGAACTCTTCCGGGAAAGGTCGAGTTCGACTATCTCCCGGAAAATTG
CCAGGCAGTGCTAATGCTGCCCGTTCTGGAGGGGTCGGCAGTCGTCGTGG
TAGGAACGAACCGGGCGCGCGCGTTCACGCCCAAGGACATCGTGTGGATG
AAGGGGCTTTGCAACCAAGCGGCATTGTCACTGCGGGAGGCGGTGGTGGC
TTGA
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