mRNA_E-siliculosus-1a_M_contig909.17179.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig909.17179.1
Unique NamemRNA_E-siliculosus-1a_M_contig909.17179.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig909.17179.1 vs. uniprot
Match: D8LKG9_ECTSI (CxC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG9_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 2.130e-8
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 2 
Query:   80 ATNGTEGQGHKGRCSVQRKPRIVLSR 157
            ATNGTEGQGHKGRCSVQRKPRIVLSR
Sbjct:  230 ATNGTEGQGHKGRCSVQRKPRIVLSR 255
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig909.17179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKG9_ECTSI2.130e-8100.00CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig909contigE-siliculosus-1a_M_contig909:3671..4260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size159
Model size159
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936435.8735764-CDS-E-siliculosus-1a_M_contig909:3670..37501622936435.8735764-CDS-E-siliculosus-1a_M_contig909:3670..3750Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig909 3671..3750 +
1696251077.55715-CDS-E-siliculosus-1a_M_contig909:3670..37501696251077.55715-CDS-E-siliculosus-1a_M_contig909:3670..3750Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig909 3671..3750 +
1622936435.8857408-CDS-E-siliculosus-1a_M_contig909:4181..42601622936435.8857408-CDS-E-siliculosus-1a_M_contig909:4181..4260Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig909 4182..4260 +
1696251077.572738-CDS-E-siliculosus-1a_M_contig909:4181..42601696251077.572738-CDS-E-siliculosus-1a_M_contig909:4181..4260Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig909 4182..4260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig909.17179.1prot_E-siliculosus-1a_M_contig909.17179.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig909 3671..4260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig909.17179.1

>prot_E-siliculosus-1a_M_contig909.17179.1 ID=prot_E-siliculosus-1a_M_contig909.17179.1|Name=mRNA_E-siliculosus-1a_M_contig909.17179.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=53bp
AAEREATGIKEFSCCIHGGLELCVCPRNKRNRRTGPQGTLQRSAQAKNRA
VPT
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mRNA from alignment at E-siliculosus-1a_M_contig909:3671..4260+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig909.17179.1 ID=mRNA_E-siliculosus-1a_M_contig909.17179.1|Name=mRNA_E-siliculosus-1a_M_contig909.17179.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=590bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig909:3671..4260+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCCGCTGAAAGAGAGGCCACTGGAATAAAGGAGTTCTCCTGCTGCATACA
TGGCGGATTGGAGCTCTGCGTTTGTCCACGGTGAACAGCGTAGGGTTCTT
GCTTAGATTTCGTTCTACGTAACATGTGATCAGGTTCCAAAATTGTAGGT
GGCTTGTATGCAACCCCGGGGCCTTCACCTCGGATCAACTTCTCTGAATT
TGTCTACCGAAAATAAATAATCCCAGTATTTGACTCAGCTAGGTGTAGTT
ACTGTAGGTGTAGCTGCGCCAATCTACGCACCTGAGCTACGCGGGCATGA
GAGGGTGTGTGTGTGCTATTGACCACGAGCTCTTTACCACGACAGTTTAG
GAGCATGCAATGACCCTGGAAGAGCATGCCATGCATCAGTACATAGTTCG
AAGTAGTTCGCGGGGCTAGGGCATGCTGGTGTGCATTGCAAACTTGTGTG
TGCTGACCAATGTGTTTGGGCATAAACTCCGTTCCTATTTGATCACTGCC
GCCGCCCACAGCAACAAACGGAACCGAAGGACAGGGCCACAAGGGACGCT
GCAGCGTTCAGCGCAAGCCAAGAATCGTGCTGTCCCGACC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig909:3671..4260+

>mRNA_E-siliculosus-1a_M_contig909.17179.1 ID=mRNA_E-siliculosus-1a_M_contig909.17179.1|Name=mRNA_E-siliculosus-1a_M_contig909.17179.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=318bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig909:3671..4260+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCCGCTGAAAGAGAGGCCACTGGAATAAAGGAGTTCTCCTGCTGCATACA
TGGCGGATTGGAGCTCTGCGTTTGTCCACGGCCGCTGAAAGAGAGGCCAC
TGGAATAAAGGAGTTCTCCTGCTGCATACATGGCGGATTGGAGCTCTGCG
TTTGTCCACGCAACAAACGGAACCGAAGGACAGGGCCACAAGGGACGCTG
CAGCGTTCAGCGCAAGCCAAGAATCGTGCTGTCCCGACCCAACAAACGGA
ACCGAAGGACAGGGCCACAAGGGACGCTGCAGCGTTCAGCGCAAGCCAAG
AATCGTGCTGTCCCGACC
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