mRNA_E-siliculosus-1a_M_contig90.17175.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig90.17175.1
Unique NamemRNA_E-siliculosus-1a_M_contig90.17175.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig90.17175.1 vs. uniprot
Match: D8LGD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD9_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.500e-12
Identity = 40/70 (57.14%), Postives = 45/70 (64.29%), Query Frame = 3 
Query:    6 RRGSPSGKWGWQERC*RAEKPTPSPLPSCAVFCPQPWWKRTWSAIVGKGDEKLPPPVPQAKPSYNRDLKS 215
            RR +  GK G +E    +  P PSP   C    P P  +  WSAI+ KGDEKLPPPVPQAKPSYNRDLKS
Sbjct:    7 RRANGVGKKGVEEP--NSAHPPPSPF-LCGPL-PLPVVETVWSAILKKGDEKLPPPVPQAKPSYNRDLKS 72
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig90.17175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGD9_ECTSI1.500e-1257.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig90contigE-siliculosus-1a_M_contig90:672506..672981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size210
Model size249
Exons2
Ec32 orthologEc-16_003680.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig90.17175.1prot_E-siliculosus-1a_M_contig90.17175.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig90 672506..672942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936419.167969-CDS-E-siliculosus-1a_M_contig90:672505..6726871622936419.167969-CDS-E-siliculosus-1a_M_contig90:672505..672687Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 672506..672687 +
1696251069.9351196-CDS-E-siliculosus-1a_M_contig90:672505..6726871696251069.9351196-CDS-E-siliculosus-1a_M_contig90:672505..672687Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 672506..672687 +
1622936419.187145-CDS-E-siliculosus-1a_M_contig90:672914..6729421622936419.187145-CDS-E-siliculosus-1a_M_contig90:672914..672942Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 672915..672942 +
1696251069.9443703-CDS-E-siliculosus-1a_M_contig90:672914..6729421696251069.9443703-CDS-E-siliculosus-1a_M_contig90:672914..672942Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 672915..672942 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936419.2038138-UTR-E-siliculosus-1a_M_contig90:672942..6729811622936419.2038138-UTR-E-siliculosus-1a_M_contig90:672942..672981Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig90 672943..672981 +
1696251069.9558907-UTR-E-siliculosus-1a_M_contig90:672942..6729811696251069.9558907-UTR-E-siliculosus-1a_M_contig90:672942..672981Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig90 672943..672981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig90.17175.1

>prot_E-siliculosus-1a_M_contig90.17175.1 ID=prot_E-siliculosus-1a_M_contig90.17175.1|Name=mRNA_E-siliculosus-1a_M_contig90.17175.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=70bp
MNEEGLRRANGAGKNDVEEPKSPHPPLSLPVRSSALSRGGNGRGRRSSGR
GTKSCRRLSLRPSRPTTEI*
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mRNA from alignment at E-siliculosus-1a_M_contig90:672506..672981+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig90.17175.1 ID=mRNA_E-siliculosus-1a_M_contig90.17175.1|Name=mRNA_E-siliculosus-1a_M_contig90.17175.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=476bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:672506..672981+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAACGAAGAGGGTCTCCGTCGGGCAAATGGGGCTGGCAAGAACGATGT
TGAAGAGCCGAAAAGCCCACACCCTCCCCTCTCCCTTCCTGTGCGGTCTT
CTGCCCTCAGCCGTGGTGGAAACGGACGTGGTCGGCGATCGTCGGGAAGG
GGGACGAAAAGCTGCCGCCGCCTGTCCCTCAGGTATAACATTGGTCGGAG
TACACTCACGGCTATGCCTACCCACGAACAAGGTATTGGTATCACGGGTT
TCGTTGGTGGTGCAAGCAGTACGTAGGGAGGCTAGCACGAGGCATTCCTA
TTGCCGACGTGAAATACGTTCGGTGCACAAGATCAGACTGACCAACGCTC
AATTGCCTTGCTCCCTCTCCTGCTCCTCCGCTTTGCCGTCTCCGTTGTTG
TCTTTGCAGGCCAAGCCGTCCTACAACAGAGATTTGAAGTCGGTGGCCAG
GGAGGAGGGCAACAACAACACCCCGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig90:672506..672981+

>mRNA_E-siliculosus-1a_M_contig90.17175.1 ID=mRNA_E-siliculosus-1a_M_contig90.17175.1|Name=mRNA_E-siliculosus-1a_M_contig90.17175.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=420bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:672506..672981+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAACGAAGAGGGTCTCCGTCGGGCAAATGGGGCTGGCAAGAACGATGT
TGAAGAGCCGAAAAGCCCACACCCTCCCCTCTCCCTTCCTGTGCGGTCTT
CTGCCCTCAGCCGTGGTGGAAACGGACGTGGTCGGCGATCGTCGGGAAGG
GGGACGAAAAGCTGCCGCCGCCTGTCCCTCAGATGAACGAAGAGGGTCTC
CGTCGGGCAAATGGGGCTGGCAAGAACGATGTTGAAGAGCCGAAAAGCCC
ACACCCTCCCCTCTCCCTTCCTGTGCGGTCTTCTGCCCTCAGCCGTGGTG
GAAACGGACGTGGTCGGCGATCGTCGGGAAGGGGGACGAAAAGCTGCCGC
CGCCTGTCCCTCAGGCCAAGCCGTCCTACAACAGAGATTTGAGCCAAGCC
GTCCTACAACAGAGATTTGA
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