mRNA_E-siliculosus-1a_M_contig90.17174.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig90.17174.1
Unique NamemRNA_E-siliculosus-1a_M_contig90.17174.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig90.17174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig90contigE-siliculosus-1a_M_contig90:670517..670834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size318
Model size318
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936419.7444847-CDS-E-siliculosus-1a_M_contig90:670516..6708341622936419.7444847-CDS-E-siliculosus-1a_M_contig90:670516..670834Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 670517..670834 +
1696251070.0619783-CDS-E-siliculosus-1a_M_contig90:670516..6708341696251070.0619783-CDS-E-siliculosus-1a_M_contig90:670516..670834Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 670517..670834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig90.17174.1prot_E-siliculosus-1a_M_contig90.17174.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig90 670517..670834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig90.17174.1

>prot_E-siliculosus-1a_M_contig90.17174.1 ID=prot_E-siliculosus-1a_M_contig90.17174.1|Name=mRNA_E-siliculosus-1a_M_contig90.17174.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=106bp
MSTHVICCLQKQQCSAAMYNGWHVRIRFRPRDPFLRKNARSGVMPSFSAS
RTQQAHTALPRSHHLTRNNNPLLSRSYQHKDHHHHELPVHDRALDPPGHL
DHGRR*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig90:670517..670834+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig90.17174.1 ID=mRNA_E-siliculosus-1a_M_contig90.17174.1|Name=mRNA_E-siliculosus-1a_M_contig90.17174.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=318bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:670517..670834+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCAACACATGTTATCTGCTGTCTGCAGAAGCAGCAGTGTTCAGCAGC
TATGTATAACGGGTGGCATGTAAGGATACGTTTTCGTCCCCGTGACCCCT
TTCTGCGGAAAAACGCCCGCTCTGGAGTCATGCCCAGCTTTTCAGCCAGC
CGCACACAACAAGCACACACCGCCCTTCCTCGCTCTCATCACCTGACAAG
GAACAACAACCCGCTACTTTCGAGATCTTATCAACACAAGGACCATCACC
ATCATGAGCTTCCCGTCCACGACCGTGCCCTTGATCCTCCTGGCCATTTG
GATCATGGTCGTCGCTGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig90:670517..670834+

>mRNA_E-siliculosus-1a_M_contig90.17174.1 ID=mRNA_E-siliculosus-1a_M_contig90.17174.1|Name=mRNA_E-siliculosus-1a_M_contig90.17174.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=636bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:670517..670834+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCAACACATGTTATCTGCTGTCTGCAGAAGCAGCAGTGTTCAGCAGC
TATGTATAACGGGTGGCATGTAAGGATACGTTTTCGTCCCCGTGACCCCT
TTCTGCGGAAAAACGCCCGCTCTGGAGTCATGCCCAGCTTTTCAGCCAGC
CGCACACAACAAGCACACACCGCCCTTCCTCGCTCTCATCACCTGACAAG
GAACAACAACCCGCTACTTTCGAGATCTTATCAACACAAGGACCATCACC
ATCATGAGCTTCCCGTCCACGACCGTGCCCTTGATCCTCCTGGCCATTTG
GATCATGGTCGTCGCTGAATGTCAACACATGTTATCTGCTGTCTGCAGAA
GCAGCAGTGTTCAGCAGCTATGTATAACGGGTGGCATGTAAGGATACGTT
TTCGTCCCCGTGACCCCTTTCTGCGGAAAAACGCCCGCTCTGGAGTCATG
CCCAGCTTTTCAGCCAGCCGCACACAACAAGCACACACCGCCCTTCCTCG
CTCTCATCACCTGACAAGGAACAACAACCCGCTACTTTCGAGATCTTATC
AACACAAGGACCATCACCATCATGAGCTTCCCGTCCACGACCGTGCCCTT
GATCCTCCTGGCCATTTGGATCATGGTCGTCGCTGA
back to top