mRNA_E-siliculosus-1a_M_contig90.17171.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig90.17171.1 vs. uniprot
Match: A0A6H5KSR4_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR4_9PHAE) HSP 1 Score: 1728 bits (4475), Expect = 0.000e+0 Identity = 1466/1806 (81.17%), Postives = 1484/1806 (82.17%), Query Frame = 2
Query: 44 MTAESSGEAAAPSDGGGKKGLSNDQLKAYIRKARAKITELEEQNKASAVDAGLLSSLREEVELWKAKFQEQVEATAAAATAAAPGDADGLEQALRDAAQAQEEASRWKEKAVAAQELEVRFLGMEEELQQTKASGELAQENLKASHQEECARLEAVIESLRQEISASEAQRQAXXXXXXSKSQEQVESLLRDAGSLEHRLIGVQQERDEAVARASQLEEQARRLEEAAVESRQAAEAGESALREEAAREAAXXXXXXXXXXXXXXXXXXXXXXEGASRLQRAVAEAEELRSEVDRLREAAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------DELASTRAEADEXXXXXXXXXXEVDRLRETAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----DELASARAEVDMLRAKVAAVEEMVASANRERDGAVSTXXXXXXXXXXXXXXXXXXXXXXEAGLKGELEASRAELEGERERVASLGQDLGQALKDKEEAEARADTASQDLATSSAALRAERDALSARLATAEEXXXXXXXXXXXXXXXXXXXXX-ETEAPSVGDGERPEEAAAXEADAGQDEEEIAALRARCEELEIGAAVASEKIAALEARVRDVDAVS-SSTAGDAAPAAPAXXXPEEASGGDRGQGEDGDATTTVVETTTPGVTSEAATDDGEGESGTQLELLEKRLREAEEAAKEAAREKEGVVAGLREEQAALNSRVLELTAEVAAAREALSASQESVEREREDGLRQARQLTERXXXXXXXXXXXXXXXAAAGQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAEEALGTLRQEKASLEGRLEETVEETSRLRQELTAAISGSTASQEGAAXXXAKAEGERAALEEQVAGQKDKLKKAAARLRSLKEERDAATEKVASTAALLETSEKNLADAEARSRSLEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLREELANATSRLSQAEDLLRSTSEESMVLRRGLEERCQRLEESAARAPALEADLAAERSGRRELXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEALQGQXXXXXXXXXXXXXXXXXXXXXXXSSKTRLKDLFAKYKAVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEREDEFAKTVGEKEQVAAAEKSAKEDLEVKVKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFVKATQ-PATSGDGGKDAAPAEASVAPEPDKQQWVTEDKARTWLAGGSSSSDAALWPKVVQEAFEERAVAAAAEARVAAEGALATRQELEALSTEFAKYKARAHTALKKATSSGAEDKRKDELIAALQSEVARLTKRVEETAANLEDLESKLAEEQGVSKAREDDLETASXXXXXXXXXXRGLQGSLRDQERKLAQLQEAEEGHSEEMSALRDARDELKSQLKAAKAQANESSCIAQRLQEELEEVTKSRGNDDRRGNGSGSWDARADGGWAGQQLLAXXXXXXX-AGPQATGEPAAAALGVSKGGVPFSEGGVPPLPAAGLGGMPSASASPSXXXXXXX---FAEGGAGQPVQLMAVAELERRHTSLEGHVQAEVTEMRNELAEALLRVEQLSAQESLLKSTIRALETDLVTERNLGSGETAPINVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQFTKQEVADVEARITELEKTMVRRAGSMVGGAGXXXXXVVGGVVGLVWGGGRAAAADDGDGVDVTEDGGE 5401
MTAESSGEAAAPSDG KKGLSNDQLKAYIRKARAKITELEEQNKASAVDAGLLSSLREEVE WKAKFQEQVEATAAAATAA P DADG+EQALRD QAQEE SRWKEKAVAAQELEVRFLGMEEELQQTKAS ELAQENLKA HQEECARLEAVI+SLRQEISASEAQRQA SKSQEQVESLLRDAG LEHRL+GVQQERDEAVA+ASQLEEQARRLEEA VESR+AAEA ESAL+EEA R AAXXXXXXXXXXXXXXXXXXXXXXEGASRLQRA+AEAEELRSEVDRLREAAAE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DELASTRAE DE EVDRLRE AX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DELAS RAEVD LRA XXXXXXXXXXXXXXXXXXXXXX AD ASQDLATSSAALRAERDALSARLAT EE XXXXXXXXXXXXXXXXXX ETEAPSVGDGE X EEE+AALR RC ELEIGAAVASEKIAALEARVRD DAVS SSTA DAA A PEEASGGDRGQ EDGDA TVVE T PGVTSEAATD E ESG Q ELLEKRLREAEEA+KEAAREKEGVVAGLREEQAALNSRVLELTAEVA AREALS+SQ+S+EREREDGLR+AR LTER XXXXX QE AEAEEAL LRQEKASLEGRL ELTAAISGSTASQEGAA AKAEGERAALEEQVAGQKDKLKKAAARLRSLKEERDAATEKVASTAALLETSEKNLADAEARSRSLEEA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NAT RL +AEDLLRSTSEESMVLRRGLEERCQRLEESAARAPALEADLAAERSGRRELXXXXXXXXXXXXXXXXXXXXXXXXXXXXM ALQGQ XXXXXXXXXXXXXXXXXXSSKTRLKDLFAKYKAVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EREDEFAK VGEKEQVAAAEKSAKEDLEVKVKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFVKATQ PATS DGGKD APAEAS AP+PDKQQWVTEDKARTWLAGGSSSSD ALWPKVVQEAFEERAVAAAAEARVAAEGALATRQELEALSTEFAKYKARAHTALKKATS+GAEDKRKDELIAALQSEVARLTKRVE AS RGLQGSLRDQERKLAQLQEAEEGHSEEMSALR+ARDELKSQLKAAKAQANESSCIAQRLQEELEEVTKSRGNDDRRGNG+GSWDARADGGWAGQQLL XXXXXXX A QAT EPAAA LGVSKGGVP SEGGVPPLPAAGLGGMPSASASP XXXXXXX FAEGGAGQPVQLMAVAELERRHTSLEGHVQAEVTEMRNELAEALLRVEQLSAQESLLKSTIRALETDLVTERNLGSGETAPINVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQFTKQEVADVEARITELEKTMVRRAGSMVGGAGXXXXXVVGGVVGLVWGGGRAAAADDGDGVDVTEDGGE
Sbjct: 1 MTAESSGEAAAPSDGAAKKGLSNDQLKAYIRKARAKITELEEQNKASAVDAGLLSSLREEVEAWKAKFQEQVEATAAAATAAEPSDADGMEQALRDVVQAQEETSRWKEKAVAAQELEVRFLGMEEELQQTKASSELAQENLKALHQEECARLEAVIDSLRQEISASEAQRQASAAEAASKSQEQVESLLRDAGLLEHRLVGVQQERDEAVAQASQLEEQARRLEEAVVESREAAEARESALKEEAVRGAAXXXXXXXXXXXXXXXXXXXXXXEGASRLQRAMAEAEELRSEVDRLREAAAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELASTRAEVDELRAKAAAVQEEVDRLREAAXEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADELASTRAEVDELRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XADAASQDLATSSAALRAERDALSARLATVEEEXXXXXXXXXXXXXXXXXXQPPETEAPSVGDGEXXXXXXXXXXXXXA-EEELAALRTRCAELEIGAAVASEKIAALEARVRDADAVSPSSTAEDAAAA------PEEASGGDRGQDEDGDAAATVVEATMPGVTSEAATDTREEESGAQRELLEKRLREAEEASKEAAREKEGVVAGLREEQAALNSRVLELTAEVATAREALSSSQKSLEREREDGLRKARVLTERAEAAEQAAATXXXXXXXXXQERERDLLEQREKA----------------------------------------------AEAEEALRRLRQEKASLEGRLXXXXXXXXXXXXELTAAISGSTASQEGAAEAVAKAEGERAALEEQVAGQKDKLKKAAARLRSLKEERDAATEKVASTAALLETSEKNLADAEARSRSLEEAIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNATCRLREAEDLLRSTSEESMVLRRGLEERCQRLEESAARAPALEADLAAERSGRRELXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGALQGQVDAANXXXXXXXXXXXXXXXXXXSSKTRLKDLFAKYKAVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEREDEFAKMVGEKEQVAAAEKSAKEDLEVKVKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFVKATQQPATSEDGGKDTAPAEASAAPKPDKQQWVTEDKARTWLAGGSSSSDVALWPKVVQEAFEERAVAAAAEARVAAEGALATRQELEALSTEFAKYKARAHTALKKATSNGAEDKRKDELIAALQSEVARLTKRVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAELETAQEQVRGLQGSLRDQERKLAQLQEAEEGHSEEMSALREARDELKSQLKAAKAQANESSCIAQRLQEELEEVTKSRGNDDRRGNGNGSWDARADGGWAGQQLLXXXXXXXXXARLQATDEPAAA-LGVSKGGVPLSEGGVPPLPAAGLGGMPSASASPXXXXXXXXXXXFAEGGAGQPVQLMAVAELERRHTSLEGHVQAEVTEMRNELAEALLRVEQLSAQESLLKSTIRALETDLVTERNLGSGETAPINVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQFTKQEVADVEARITELEKTMVRRAGSMVGGAGXXXXXVVGGVVGLVWGGGRAAAADDGDGVDVTEDGGE 1745
BLAST of mRNA_E-siliculosus-1a_M_contig90.17171.1 vs. uniprot
Match: D8LKN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN4_ECTSI) HSP 1 Score: 785 bits (2027), Expect = 4.380e-254 Identity = 844/1108 (76.17%), Postives = 856/1108 (77.26%), Query Frame = 2
Query: 197 GLLSSLREEVELWKAKFQEQVEATAAAATAAAPGDADGLEQALRDAAQAQEEASRWKEKAVAAQELEVRFLGMEEELQQTKASGELAQENLKASHQEECARLEAVIESLRQEISASEAQRQAXXXXXXSKSQEQVESLLRDAGSLEHRLIGVQQERDEAVARASQLEEQARRLEEAAVESRQAAEAGESALREEAAREAAXXXXXXXXXXXXXXXXXXXXXXEGASRLQRAVAEAEELRSEVDRLREAAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELASTRAEADEXXXXXXXXXXEVDRLRETAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELASARAEVDMLRAKVAAVEEMVASANRERDGAVSTXXXXXXXXXXXXXXXXXXXXXXEAGLKGELEASRAELEGERERVASLGQDLGQALKDKEEAEARADTASQDLATSSAALRAERDALSARLATAEEXXXXXXXXXXXXXXXXXXXXXETEAPSVGDGERPEEAAAXEADAGQDEEEIAALRARCEELEIGAAVASEKIAALEARVRDVDAVSSSTAGDAAPAAPAXXXPEEASGGDRGQGEDGDATTTVVETTTPGVTSEAATDDGEGESGTQLELLEKRLREAEEAAKEAAREKEGVVAGLREEQAALNSRVLELTAEVAAAREALSASQESVEREREDGLRQARQLTERXXXXXXXXXXXXXXXAAAGQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAEEALGTLRQ-----------------------EKASLEGRLEETVEETSRLRQELTAAISGSTASQEGAAXXXAKAEGERAALEEQVAGQKDKLKKAAARLRSLKEERDAATEKVASTAALLETSEKNLADAEARSRSLEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLREELANATSRLSQAEDLLRSTSEESMVLRRGLEERCQRLEESAARAPALEADLAAERSGRRELXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEALQGQXXXXXXXXXXXXXXXXXXXXXXXSSKTRLKDLFAKYKAVQ 3451
GLLSSLREEVE+WKAKFQEQVEATAAAA AA PGDADGLEQAL DAAQAQEEASRWKEKAVAAQELEVRFLGMEEELQQTKASGELAQENLKASHQEECARLEAV+ESLRQE+SASEAQRQA SKSQEQVES LRDAGSLEHRL+GVQQERDEAVARASQLEEQARRLEEAAVESR+AAE GESALREEAAREAAXXXXXXXXXXXXXXXXXXXX XEGASRLQRAVAEAEELRSEVDRLREAAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DELASARAEVD LRAKVAAV EMVASANRERD AV XXXXXXXXXXXXXXXXXXXXXX GLKGELEASRAELEGERERVA LGQ+L QA KDKEEAEARAD ASQDLATSSAALRAERDALSARLATAE XXXXXXXXXXXXXXXXXXXX ETEAPSVGDGERPEE X IAALRARCEELEIGAAVASEKIAALEARVRDVDAVSSSTAGDA XXX E ES QLELL+KRLRE +EAAKE AREKEGVVAGLREEQAALNSRVLELTAEVAAAREALSASQE +EREREDGLRQARQLTER AAAGQE XXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX XXXXXX EKASLEGRLEE EETSRLRQELTAAISGSTASQEGAA AKAEGERAALEEQVAGQKDKLKKAAARLRSLKEERDAATEKVA T+ALLETSEKNLADAEAR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SRL +AEDLLRSTSEESMVLR+GLEERCQRLEESAARAPALEADLAAERSGRRELXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXX SSKTRLKDLFAKYKAVQ
Sbjct: 4 GLLSSLREEVEVWKAKFQEQVEATAAAAGAAEPGDADGLEQALSDAAQAQEEASRWKEKAVAAQELEVRFLGMEEELQQTKASGELAQENLKASHQEECARLEAVVESLRQEVSASEAQRQASAAEAASKSQEQVESFLRDAGSLEHRLVGVQQERDEAVARASQLEEQARRLEEAAVESREAAEDGESALREEAAREAAXXXXXXXXXXXXXXXXXXXXEXEGASRLQRAVAEAEELRSEVDRLREAAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------ADELASARAEVDELRAKVAAVGEMVASANRERDEAVXXXXXXXXXXXXXXXXXXXXXXXXXXGLKGELEASRAELEGERERVACLGQELRQAFKDKEEAEARADAASQDLATSSAALRAERDALSARLATAEXXXXXXXXXXXXXXXXXXXXX-ETEAPSVGDGERPEEXXXXXXXXXXXXX-IAALRARCEELEIGAAVASEKIAALEARVRDVDAVSSSTAGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEESVAQLELLKKRLREVKEAAKEPAREKEGVVAGLREEQAALNSRVLELTAEVAAAREALSASQECLEREREDGLRQARQLTERAEAAEQAAEEA----AAAGQERERDLEEQRXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXXXXXXXXXAAEATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKASLEGRLEEAAEETSRLRQELTAAISGSTASQEGAAEAVAKAEGERAALEEQVAGQKDKLKKAAARLRSLKEERDAATEKVAFTSALLETSEKNLADAEARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLREAEDLLRSTSEESMVLRQGLEERCQRLEESAARAPALEADLAAERSGRRELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESSKTRLKDLFAKYKAVQ 1038
BLAST of mRNA_E-siliculosus-1a_M_contig90.17171.1 vs. uniprot
Match: D8LGD5_ECTSI (GRIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD5_ECTSI) HSP 1 Score: 289 bits (739), Expect = 3.540e-86 Identity = 166/174 (95.40%), Postives = 167/174 (95.98%), Query Frame = 2
Query: 4886 MAVAELERRHTSLEGHVQAEVTEMRNELAEALLRVEQLSAQESLLKSTIRALETDLVTERNLGSGETAPINVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQFTKQEVADVEARITELEKTMVRRAGSMVGGAGXXXXXVVGGVVGLVWGGGRAAAADDGDGVDVTEDGGEGR 5407
MAVAELERRHTS+EGHVQAEVTEMRNELAEALLRVEQLSAQESLLKSTIRALETDLVTERNLGSGETAPINVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQFTKQEVADVEARITELEKTMVRRAGSMVGG XXXXXVV VVGLVWGGGRAA AD GDGVDVTEDGGE R
Sbjct: 1 MAVAELERRHTSVEGHVQAEVTEMRNELAEALLRVEQLSAQESLLKSTIRALETDLVTERNLGSGETAPINVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQFTKQEVADVEARITELEKTMVRRAGSMVGGXXXXXXXVVXXVVGLVWGGGRAAPADGGDGVDVTEDGGEER 174
BLAST of mRNA_E-siliculosus-1a_M_contig90.17171.1 vs. uniprot
Match: D7FMD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD5_ECTSI) HSP 1 Score: 106 bits (265), Expect = 7.640e-24 Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 2
Query: 3689 VKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFVKATQ 3853
VKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFVKATQ
Sbjct: 2 VKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFVKATQ 56 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig90.17171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig90.17171.1 >prot_E-siliculosus-1a_M_contig90.17171.1 ID=prot_E-siliculosus-1a_M_contig90.17171.1|Name=mRNA_E-siliculosus-1a_M_contig90.17171.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1789bp MTAESSGEAAAPSDGGGKKGLSNDQLKAYIRKARAKITELEEQNKASAVDback to top mRNA from alignment at E-siliculosus-1a_M_contig90:619746..645285+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig90.17171.1 ID=mRNA_E-siliculosus-1a_M_contig90.17171.1|Name=mRNA_E-siliculosus-1a_M_contig90.17171.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=25540bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:619746..645285+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig90:619746..645285+ >mRNA_E-siliculosus-1a_M_contig90.17171.1 ID=mRNA_E-siliculosus-1a_M_contig90.17171.1|Name=mRNA_E-siliculosus-1a_M_contig90.17171.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=10734bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:619746..645285+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |