mRNA_E-siliculosus-1a_M_contig90.17134.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig90.17134.1 vs. uniprot
Match: A0A6H5JSB2_9PHAE (DUF4440 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSB2_9PHAE) HSP 1 Score: 454 bits (1167), Expect = 1.110e-154 Identity = 233/243 (95.88%), Postives = 235/243 (96.71%), Query Frame = 1
Query: 1 MGRFSTTVLASTAVSMLTQDVNAFLAVPSTAPQAVGPAPTSSPFRRWNNRPRPRAWMSEGSGAPATTRRDMFQVAGAAIAAT-VGLTAVPVTRSAGAAVTEGDRKGVEQTTIRWKETVTLGTPDAPRKTADLYAVDGVLWGTVSEEVRDTPEEIYDYFDYFARLPKLRLSEFTPVSLRVYGDFATEAGTYTFKWQGEDGVPKEKRARFSFTFRSDPESPTSWTIVEHHSSSMPTSPLQLKHVR 726
MGRFSTTVLASTAVSMLTQDVNAFLAVPSTAPQAV PAP+ S RRWNNRPRPRAWMSEGSGAPATTRRDMFQ AGAAIAAT +GLTAVPVTRSAGAAVTEGDRKGVEQTTIRWKE VTLGTPDAPRKTADLYAVDGVLWGTVSEEVRDTPEEIYDYFDYFARLP LRLSEFTPVSLRVYGDFATEAGTYTFKWQGEDGVPKEKRARFSFTFRSDPESPTSWTIVEHHSSSMPTSPLQLKHVR
Sbjct: 1 MGRFSTTVLASTAVSMLTQDVNAFLAVPSTAPQAVWPAPSPSSVRRWNNRPRPRAWMSEGSGAPATTRRDMFQAAGAAIAATAMGLTAVPVTRSAGAAVTEGDRKGVEQTTIRWKEMVTLGTPDAPRKTADLYAVDGVLWGTVSEEVRDTPEEIYDYFDYFARLPNLRLSEFTPVSLRVYGDFATEAGTYTFKWQGEDGVPKEKRARFSFTFRSDPESPTSWTIVEHHSSSMPTSPLQLKHVR 243
BLAST of mRNA_E-siliculosus-1a_M_contig90.17134.1 vs. uniprot
Match: D7FUF8_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF8_ECTSI) HSP 1 Score: 218 bits (555), Expect = 2.940e-59 Identity = 111/155 (71.61%), Postives = 124/155 (80.00%), Query Frame = 1
Query: 265 PVTRSAGAAVTEG-DRKGVEQTTIRWKETVTLGTPDAPRKTADLYAVDGVLWGTVSEEVRDTPEEIYDYFDYFARLPKLRLSEFTPVSLRVYGDFATEAGTYTFKWQGEDGVPKEKRARFSFTFRSD-PESPTSWTIVEHHSSSMPTSPLQLKHV 723
P +S G A TE D+K V TT+ WKETVT GT DAP+KTA LYA DGVLWGTVSEEVRDTPE+IY YFDYFARLP+LR+ E+TPV++RVYGDFA +AGTYTF +QG DG EKRARFSFTFR D P SP WTIVEHHSSSMPT+P LK V
Sbjct: 114 PAGKSPGVATTEAEDQKAVADTTLVWKETVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYFDYFARLPELRVVEYTPVAVRVYGDFAIQAGTYTFAFQGADGATVEKRARFSFTFRRDRPGSPQPWTIVEHHSSSMPTAPAGLKRV 268
BLAST of mRNA_E-siliculosus-1a_M_contig90.17134.1 vs. uniprot
Match: A0A6H5K0Z5_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0Z5_9PHAE) HSP 1 Score: 218 bits (556), Expect = 3.010e-59 Identity = 108/171 (63.16%), Postives = 128/171 (74.85%), Query Frame = 1
Query: 304 DRKGVEQTTIRWKETVTLGTPDAPRKTADLYAVDGVLWGTVSEEVRDTPEEIYDYFDYFARLPKLRLSEFTPVSLRVYGDFATEAGTYTFKWQGEDGVPKEKRARFSFTFR-SDPESPTSWTIVEHHSSSMPTSPLQLKHVR*WELGAVSWVLEERESFC*NRFVARGNLP 813
D+K V +TTI WK+TVTLGT DAP+KTA LYA D VLWGTVSEEVR+TPE+IYDYFD+FARLPKLRL E+TP +RVYG+FA +AGTYTF W+G+DG EKRARFSFTFR P SP WTIVEHHSSSMP +P +LKHV + G + +V + V+ LP
Sbjct: 322 DQKAVAETTIVWKDTVTLGTDDAPKKTAALYAPDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLLEYTPAPVRVYGEFAVQAGTYTFAWEGDDGDTVEKRARFSFTFRRGKPGSPRPWTIVEHHSSSMPDAPAELKHVEPEDDG-IDYVAQAVADLSATSSVSSSTLP 491
BLAST of mRNA_E-siliculosus-1a_M_contig90.17134.1 vs. uniprot
Match: A0A6H5JT29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT29_9PHAE) HSP 1 Score: 214 bits (545), Expect = 4.480e-59 Identity = 104/141 (73.76%), Postives = 116/141 (82.27%), Query Frame = 1
Query: 304 DRKGVEQTTIRWKETVTLGTPDAPRKTADLYAVDGVLWGTVSEEVRDTPEEIYDYFDYFARLPKLRLSEFTPVSLRVYGDFATEAGTYTFKWQGEDGVPKEKRARFSFTFR-SDPESPTSWTIVEHHSSSMPTSPLQLKHV 723
D+K V TTI WK+TVTLGT DAP+KTA LYA D VLWGTVSEEVR+TPE+IYDYFD+FARLPKLR+ E+TP +RVYG+FA EAGTYTF WQGEDG EKRARFSFTFR P SP WTIVEHHSSSMP +P +LK V
Sbjct: 293 DQKAVAATTIVWKDTVTLGTDDAPKKTAALYAPDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRVVEYTPAPVRVYGEFAVEAGTYTFAWQGEDGKTVEKRARFSFTFRRGKPGSPQPWTIVEHHSSSMPIAPAELKPV 433
BLAST of mRNA_E-siliculosus-1a_M_contig90.17134.1 vs. uniprot
Match: A0A6H5JX02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX02_9PHAE) HSP 1 Score: 215 bits (548), Expect = 5.130e-59 Identity = 101/141 (71.63%), Postives = 111/141 (78.72%), Query Frame = 1
Query: 295 TEGDRKGVEQTTIRWKETVTLGTPDAPRKTADLYAVDGVLWGTVSEEVRDTPEEIYDYFDYFARLPKLRLSEFTPVSLRVYGDFATEAGTYTFKWQGEDGVPKEKRARFSFTFRSDPESPTSWTIVEHHSSSMPTSPLQLK 717
T D+K V T + WK+TVT+GT D PRKTADLYA D LWGTVSEEVRDTPE+IY YFDYFARLP LRL E+TPV++RVYGDFA +AGTYTF WQ DG EKRARFSFTFR DP P W IVEHHSSSMPT+P LK
Sbjct: 183 TTPDQKAVAATAVVWKDTVTMGTDDTPRKTADLYAQDATLWGTVSEEVRDTPEQIYAYFDYFARLPALRLVEYTPVAVRVYGDFAVQAGTYTFSWQDNDGTTVEKRARFSFTFRRDPSKPQQWAIVEHHSSSMPTAPAGLK 323
BLAST of mRNA_E-siliculosus-1a_M_contig90.17134.1 vs. uniprot
Match: D7FN21_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN21_ECTSI) HSP 1 Score: 216 bits (550), Expect = 1.940e-58 Identity = 106/143 (74.13%), Postives = 118/143 (82.52%), Query Frame = 1
Query: 298 EGDRKGVEQTTIRWKETVTLGTPDAPRKTADLYAVDGVLWGTVSEEVRDTPEEIYDYFDYFARLPKLRLSEFTPVSLRVYGDFATEAGTYTFKWQGEDGVPKEKRARFSFTFRSD-PESPTSWTIVEHHSSSMPTSPLQLKHV 723
E D+ V TT+ WK+TVT GT DAP+KTA LYA DGVLWGTVSEEVRDTPE+IY YFDYFARLP+LRL E+TPV++RVYGDFA +AGTYTF +QG DG EKRARFSFTFR D PESPT WTIVEHHSSSMP +P LK V
Sbjct: 131 EEDKAAVAATTVVWKDTVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYFDYFARLPELRLVEYTPVAVRVYGDFAVQAGTYTFAFQGADGATVEKRARFSFTFRRDHPESPTPWTIVEHHSSSMPNAPAGLKRV 273
BLAST of mRNA_E-siliculosus-1a_M_contig90.17134.1 vs. uniprot
Match: D7FUF9_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF9_ECTSI) HSP 1 Score: 214 bits (545), Expect = 2.550e-57 Identity = 101/141 (71.63%), Postives = 111/141 (78.72%), Query Frame = 1
Query: 295 TEGDRKGVEQTTIRWKETVTLGTPDAPRKTADLYAVDGVLWGTVSEEVRDTPEEIYDYFDYFARLPKLRLSEFTPVSLRVYGDFATEAGTYTFKWQGEDGVPKEKRARFSFTFRSDPESPTSWTIVEHHSSSMPTSPLQLK 717
T D+K V T + WK+TVT+GT D PRKTADLYA D LWGTVSEEVRDTPE+IY YFDYFARLP LRL E+TPV++RVYGDFA +AGTYTF WQ DG EKRARFSFTFR DP P W IVEHHSSSMPT+P LK
Sbjct: 328 TTPDQKAVAATAVVWKDTVTMGTDDTPRKTADLYAQDATLWGTVSEEVRDTPEQIYAYFDYFARLPALRLVEYTPVAVRVYGDFAVQAGTYTFSWQDNDGDTVEKRARFSFTFRRDPNKPQQWAIVEHHSSSMPTAPAGLK 468
BLAST of mRNA_E-siliculosus-1a_M_contig90.17134.1 vs. uniprot
Match: A0A6H5LB09_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB09_9PHAE) HSP 1 Score: 217 bits (552), Expect = 3.260e-56 Identity = 106/141 (75.18%), Postives = 115/141 (81.56%), Query Frame = 1
Query: 304 DRKGVEQTTIRWKETVTLGTPDAPRKTADLYAVDGVLWGTVSEEVRDTPEEIYDYFDYFARLPKLRLSEFTPVSLRVYGDFATEAGTYTFKWQGEDGVPKEKRARFSFTFRSD-PESPTSWTIVEHHSSSMPTSPLQLKHV 723
D K V +TTI WK TVTLGT DAP+KTA LYA D VLWGTVSEEVR+TPE+IYDYFD+FARLPKLRL E+TP RVYG FA +AGTYTF WQG DG EKRARFSFTFR D PESPT WTIVEHHSSSMP++P LK V
Sbjct: 1417 DMKAVSETTIVWKNTVTLGTEDAPKKTAALYAEDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPARVYGQFAVQAGTYTFAWQGNDGETVEKRARFSFTFRRDHPESPTPWTIVEHHSSSMPSAPDGLKRV 1557
BLAST of mRNA_E-siliculosus-1a_M_contig90.17134.1 vs. uniprot
Match: A0A6H5JTS4_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTS4_9PHAE) HSP 1 Score: 194 bits (493), Expect = 6.210e-50 Identity = 95/153 (62.09%), Postives = 114/153 (74.51%), Query Frame = 1
Query: 298 EGDRKGVEQTTIRWKETVTLGTPDAPRKTADLYAVDGVLWGT------------VSEEVRDTPEEIYDYFDYFARLPKLRLSEFTPVSLRVYGDFATEAGTYTFKWQGEDGVPKEKRARFSFTFR-SDPESPTSWTIVEHHSSSMPTSPLQLK 717
E + + V +TT+ W ETVT GT DAP++TA+LYA D +LWGT VSE VRDTPE+IY YFDYFARLP+L++ E+TP +RVYGDFA +AG+YTF WQG DG E RARFSFTFR + P SP WTIVEHHSSSMPTSPL+L+
Sbjct: 206 EEETRSVSETTLAWTETVTRGTYDAPKRTAELYAPDAILWGTEVCGXXXXXXXTVSETVRDTPEQIYAYFDYFARLPELKVVEYTPAPVRVYGDFAAQAGSYTFSWQGTDGSTVEMRARFSFTFRRAGPSSPQPWTIVEHHSSSMPTSPLELE 358
BLAST of mRNA_E-siliculosus-1a_M_contig90.17134.1 vs. uniprot
Match: A0A6H5K6U8_9PHAE (DUF4440 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6U8_9PHAE) HSP 1 Score: 163 bits (412), Expect = 1.050e-43 Identity = 74/138 (53.62%), Postives = 96/138 (69.57%), Query Frame = 1
Query: 304 DRKGVEQTTIRWKETVTLGTPDAPRKTADLYAVDGVLWGTVSEEVRDTPEEIYDYFDYFARLPKLRLSEFTPVSLRVYGDFATEAGTYTFKWQGEDGVPKEKRARFSFTFRSDPESPTSWTIVEHHSSSMPTSPLQLK 717
D+K V+ T W++TVT T DAP+KTA +YA D + WGTVSEEVR+TPE +YDYFD+FAR+PKL + + P R++GDFA AG YTF W G DG E RARF+F +R + W ++EHHSS+MP +P LK
Sbjct: 14 DQKAVDAATRHWRDTVTSNTEDAPKKTAAIYADDALFWGTVSEEVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAVHAGAYTFAWAGADGAMTETRARFTFAYRRENGK---WVMIEHHSSAMPKAPPGLK 148 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig90.17134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig90.17134.1 >prot_E-siliculosus-1a_M_contig90.17134.1 ID=prot_E-siliculosus-1a_M_contig90.17134.1|Name=mRNA_E-siliculosus-1a_M_contig90.17134.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=243bp MGRFSTTVLASTAVSMLTQDVNAFLAVPSTAPQAVGPAPTSSPFRRWNNRback to top mRNA from alignment at E-siliculosus-1a_M_contig90:254514..259054+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig90.17134.1 ID=mRNA_E-siliculosus-1a_M_contig90.17134.1|Name=mRNA_E-siliculosus-1a_M_contig90.17134.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4541bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:254514..259054+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig90:254514..259054+ >mRNA_E-siliculosus-1a_M_contig90.17134.1 ID=mRNA_E-siliculosus-1a_M_contig90.17134.1|Name=mRNA_E-siliculosus-1a_M_contig90.17134.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1458bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:254514..259054+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |