mRNA_E-siliculosus-1a_M_contig90.17124.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig90.17124.1
Unique NamemRNA_E-siliculosus-1a_M_contig90.17124.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig90.17124.1 vs. uniprot
Match: D8LKI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKI9_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.850e-22
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = -1 
Query:  266 LTLDQGFPSLRLDSTTPSVSLEHPMATNRPSETLPAWPGVEVELAWGSSPL 418
            LTL QGFPSLRLDSTTPSVSLEHPMATNRPSETLPAWPGVEVELAWGSSPL
Sbjct:  194 LTLGQGFPSLRLDSTTPSVSLEHPMATNRPSETLPAWPGVEVELAWGSSPL 244
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BLAST of mRNA_E-siliculosus-1a_M_contig90.17124.1 vs. uniprot
Match: A0A6H5K7V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V8_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 9.610e-22
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = -1 
Query:  266 KLTLDQGFPSLRLDSTTPSVSLEHPMATNRPSETLPAWPGVEVELAWGSSPL 421
            KLTLDQGFPSLRLDS TPSVSLEHPMATNRPSETLP WPGVEVELAWGSSPL
Sbjct:  330 KLTLDQGFPSLRLDSITPSVSLEHPMATNRPSETLPVWPGVEVELAWGSSPL 381
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig90.17124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKI9_ECTSI1.850e-2298.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7V8_9PHAE9.610e-2296.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig90contigE-siliculosus-1a_M_contig90:211489..212494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size597
Model size1006
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig90.17124.1prot_E-siliculosus-1a_M_contig90.17124.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig90 211608..212204 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936419.3240445-UTR-E-siliculosus-1a_M_contig90:211488..2116071622936419.3240445-UTR-E-siliculosus-1a_M_contig90:211488..211607Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig90 211489..211607 +
1696251069.978402-UTR-E-siliculosus-1a_M_contig90:211488..2116071696251069.978402-UTR-E-siliculosus-1a_M_contig90:211488..211607Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig90 211489..211607 +
1622936419.3538234-UTR-E-siliculosus-1a_M_contig90:212204..2124941622936419.3538234-UTR-E-siliculosus-1a_M_contig90:212204..212494Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig90 212205..212494 +
1696251069.9968867-UTR-E-siliculosus-1a_M_contig90:212204..2124941696251069.9968867-UTR-E-siliculosus-1a_M_contig90:212204..212494Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig90 212205..212494 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936419.338157-CDS-E-siliculosus-1a_M_contig90:211607..2122041622936419.338157-CDS-E-siliculosus-1a_M_contig90:211607..212204Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 211608..212204 +
1696251069.9873765-CDS-E-siliculosus-1a_M_contig90:211607..2122041696251069.9873765-CDS-E-siliculosus-1a_M_contig90:211607..212204Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 211608..212204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig90.17124.1

>prot_E-siliculosus-1a_M_contig90.17124.1 ID=prot_E-siliculosus-1a_M_contig90.17124.1|Name=mRNA_E-siliculosus-1a_M_contig90.17124.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=199bp
MTRTRNTRARMLWTKGLPAVTPMNYSTWVFKDALIGGRYVTSRARLRHAK
GLLPHANSTSTPGQAGNVSLGRFVAIGCSRETEGVVLSRRSDGKPWSSVS
FRNDDGQDTPSKDWLKSSEKARCCSDAGHRTPFTGWLKHLPKTIVCRDSG
QKTSPIGWLKRMPNTNVCSDSGHETFSIALLKCMPKVSLSRDTGQDTL*
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mRNA from alignment at E-siliculosus-1a_M_contig90:211489..212494+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig90.17124.1 ID=mRNA_E-siliculosus-1a_M_contig90.17124.1|Name=mRNA_E-siliculosus-1a_M_contig90.17124.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1006bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:211489..212494+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGATCACCGACGACGTGAGCCTGACACGCGACCCCGCACCCTTCAAGAAC
ACATTTTTCTTTAACTTGCTTCACTCACTGTTTGTTCGATTCGGCGTCGT
CGAGCGGTCGAAAAACTTCATGACACGAACACGTAACACGAGAGCACGGA
TGCTCTGGACAAAAGGCTTGCCAGCCGTTACTCCAATGAATTACTCAACC
TGGGTTTTCAAAGATGCACTGATCGGGGGAAGGTATGTGACATCCAGGGC
ACGACTTCGTCACGCCAAAGGGCTACTCCCCCACGCCAATTCGACCTCTA
CGCCAGGCCAGGCTGGCAACGTTTCACTAGGACGGTTTGTGGCCATCGGG
TGCTCGAGGGAGACAGAAGGCGTGGTGCTATCGAGGCGTAGTGACGGGAA
GCCTTGGTCGAGTGTTAGCTTCCGGAACGACGACGGCCAAGATACCCCGT
CGAAAGATTGGTTGAAGTCATCGGAGAAGGCCAGATGTTGCAGCGATGCC
GGCCACCGTACGCCTTTCACCGGTTGGTTGAAGCACTTGCCAAAAACTAT
CGTCTGCAGAGATTCTGGCCAGAAAACGTCCCCAATCGGCTGGTTAAAGC
GCATGCCAAACACTAACGTTTGCAGCGATTCCGGCCACGAAACGTTTTCG
ATCGCCTTGTTGAAGTGCATGCCGAAGGTCAGCCTGAGCAGAGATACCGG
CCAGGATACGTTGTAGATCTCCCGGTTGAAGCCCGTTGAAAAGCACAGCT
CCTGTAGTGACACAGGCCACACGACGTGGTCCACCTGCTGGTTGAAGTAA
CGCCCGAAGTGCAGCTTCCGCAGTGACGGTGGCAACAAAACACCGTCGAC
TGGCTGGTCAAACTCCCCGCAGAAGGCCAGTCGTTGCAGATTTGGGGGCC
ACGCGACATCACTGGCCTGCTGATTGAACTCCCACCCGATCTTCAGCTCC
TCCAGAGAGACTGGCCACGTACCCTTAGTAATGGATTCGTTCAAATTTGC
TAAGAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig90:211489..212494+

>mRNA_E-siliculosus-1a_M_contig90.17124.1 ID=mRNA_E-siliculosus-1a_M_contig90.17124.1|Name=mRNA_E-siliculosus-1a_M_contig90.17124.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1194bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:211489..212494+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGACACGAACACGTAACACGAGAGCACGGATGCTCTGGACAAAAGGCTT
GCCAGCCGTTACTCCAATGAATTACTCAACCTGGGTTTTCAAAGATGCAC
TGATCGGGGGAAGGTATGTGACATCCAGGGCACGACTTCGTCACGCCAAA
GGGCTACTCCCCCACGCCAATTCGACCTCTACGCCAGGCCAGGCTGGCAA
CGTTTCACTAGGACGGTTTGTGGCCATCGGGTGCTCGAGGGAGACAGAAG
GCGTGGTGCTATCGAGGCGTAGTGACGGGAAGCCTTGGTCGAGTGTTAGC
TTCCGGAACGACGACGGCCAAGATACCCCGTCGAAAGATTGGTTGAAGTC
ATCGGAGAAGGCCAGATGTTGCAGCGATGCCGGCCACCGTACGCCTTTCA
CCGGTTGGTTGAAGCACTTGCCAAAAACTATCGTCTGCAGAGATTCTGGC
CAGAAAACGTCCCCAATCGGCTGGTTAAAGCGCATGCCAAACACTAACGT
TTGCAGCGATTCCGGCCACGAAACGTTTTCGATCGCCTTGTTGAAGTGCA
TGCCGAAGGTCAGCCTGAGCAGAGATACCGGCCAGGATACGTTGTAGATG
ACACGAACACGTAACACGAGAGCACGGATGCTCTGGACAAAAGGCTTGCC
AGCCGTTACTCCAATGAATTACTCAACCTGGGTTTTCAAAGATGCACTGA
TCGGGGGAAGGTATGTGACATCCAGGGCACGACTTCGTCACGCCAAAGGG
CTACTCCCCCACGCCAATTCGACCTCTACGCCAGGCCAGGCTGGCAACGT
TTCACTAGGACGGTTTGTGGCCATCGGGTGCTCGAGGGAGACAGAAGGCG
TGGTGCTATCGAGGCGTAGTGACGGGAAGCCTTGGTCGAGTGTTAGCTTC
CGGAACGACGACGGCCAAGATACCCCGTCGAAAGATTGGTTGAAGTCATC
GGAGAAGGCCAGATGTTGCAGCGATGCCGGCCACCGTACGCCTTTCACCG
GTTGGTTGAAGCACTTGCCAAAAACTATCGTCTGCAGAGATTCTGGCCAG
AAAACGTCCCCAATCGGCTGGTTAAAGCGCATGCCAAACACTAACGTTTG
CAGCGATTCCGGCCACGAAACGTTTTCGATCGCCTTGTTGAAGTGCATGC
CGAAGGTCAGCCTGAGCAGAGATACCGGCCAGGATACGTTGTAG
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