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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig90.17111.1 vs. uniprot
Match: D8LKH5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH5_ECTSI) HSP 1 Score: 184 bits (468), Expect = 1.240e-55 Identity = 104/133 (78.20%), Postives = 109/133 (81.95%), Query Frame = 3
Query: 231 VLVTVHGDDVCALEKELSLGVRVPSAADGVTPNDIIGNIAEEPPASASARNRRQATNERDKVSIPADRVRGYETRSGLPHTAYIDTARRQLEVL-ETCPIDRAGRCSLLFSYGLLFQGSTIDKGPRTTIWKQM 626
VL TVHGDDVCALEKEL LGVRVPS A GVTPNDII +IAEEPPASASA RRQATNER KVSIPADRVR ETRSGLPHTAYID ARRQ EVL ETCPIDRAG L +FQG+T+D+ PRT IWKQM
Sbjct: 82 VLATVHGDDVCALEKELYLGVRVPSEAGGVTPNDIIDSIAEEPPASASAGFRRQATNERGKVSIPADRVR--ETRSGLPHTAYIDAARRQPEVLIETCPIDRAGSQLRL----AVFQGNTLDRDPRTKIWKQM 208
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 531 |
| Model size | 629 |
| Exons | 4 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936418.8083768-UTR-E-siliculosus-1a_M_contig90:67553..67650 | 1622936418.8083768-UTR-E-siliculosus-1a_M_contig90:67553..67650 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig90 67554..67650 + |
| 1696251069.7456446-UTR-E-siliculosus-1a_M_contig90:67553..67650 | 1696251069.7456446-UTR-E-siliculosus-1a_M_contig90:67553..67650 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig90 67554..67650 + |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig90.17111.1 >prot_E-siliculosus-1a_M_contig90.17111.1 ID=prot_E-siliculosus-1a_M_contig90.17111.1|Name=mRNA_E-siliculosus-1a_M_contig90.17111.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=177bp
MLSSAPSNPGSWATPRTPGRGAPSLAASAVGWRGTTGLPCTAVGRSCYCP
RRRRVRLGEGAVSGGQGAVGGGRCHAQRHYRQHRGGASGVGVGPKSAPGH
KRARQSFDTCRSGSGLRNAQRPPAHGVHRHRQAAARGPRDLPDRQGRQVL
PLIFLRLAVPGQHHRQRPQDHDLEAND back to topmRNA from alignment at E-siliculosus-1a_M_contig90:67554..70091+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig90.17111.1 ID=mRNA_E-siliculosus-1a_M_contig90.17111.1|Name=mRNA_E-siliculosus-1a_M_contig90.17111.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2538bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:67554..70091+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTCGTCAAGGTCCTCACCGACCCAACCAGCGCGGGGTTAGGCGGGCGTCC
GGATGAGCCGCTGCTGCTGGTGCAGAACCTAGCACTCGACGAGACGGATG
CTATCTTCGGCGCCTTCGAACCCAGGTTCCTGGGCTACGCCGCGGACGCC
GGGTCGTGGAGCCCCCTCCCTGGCGGCTTCAGCCGTTGGTTGGAGAGGTA
CCACCGGGTTGCCCTGCACGGCAGTCGGCCGTTCTTGTTACTGTCCACGT
GAGTGTTTGTGGTGTGGTGGTTGTGGCTGCCTTCAACGCTCAACAAAGGT
TGCGTCCAGGTTTTCTTCTCCACCCCCCTCTCCTGGCGTTAGGCAATATG
TTCGCCGCCGCCTGAGCGTCATGATGTGCCCTAGCAGATCTGCCTCTACG
ACAACCCTCCTTCCCGCCACGTGGTCCCCTCGAGCAAGTACACGATACCT
GTTGACACGATTCGTATGTTACTCTCCGTGGTAGTCAAACATCCAAGACT
TGAAAAATATAAGTACCCGCCCCTCCAACGTCCTAGGTTATGAGGAAGAG
GCGTGAACCTAAGGTATGTCGACTAATATAGTCCCGGCTTCCGCTCCCCC
CCCCCTCTTCGGCCGGCCCCTACGACAGGGCGACGACGTGTGCGCCTTGG
AGAAGGAGCTGTCTCTGGGGGTCAGGGTGCCGTCGGCGGCGGACGGTGTC
ACGCCCAACGACATTATCGGCAACATCGCGGAGGAGCCTCCGGCGTCGGC
GTCGGCCCGAAATCGGCGCCAGGCCACAAACGAGCGCGACAAAGGTGAGA
GGCGGCATGGGTACATGTACTTGCTCATGGGTGGGAAAGTTGTTCATTCG
GCCATCGGGGTAGGACAGCGTGTTGGTGAGTTCGGTGTAAAGGAATAGGT
GCCGGTGGTGTCCGTCCTGAACGCCTTTTGATCTGTAGGGGGGAAACAAG
AGAAAGAGAAGGAGAGAGAGGGGGGGGGGGGAGAGACCTCGGTCGCATGA
GGAAATCCGAAGTCATAATGCCGCCGATTGGGGGCAGGGAGCACAGGAGT
GATACCTGAAAGGTTGTTTTTCAAGACCAAGAACATTATATTTCATTGTT
TCCTTCAGGAACAATTCCCGCCCATCTTCGCCCGCCAACAGGCCGCAGCA
GTGCCGGTGACGACGGCGCGAGGCCGCATCTCGCTGTAGAGGGGCAGGAG
GGAGACTTCGAGGAGGTTCCTGTGGTTCTCATGACTGTCGGCTGGGACCC
GGCGGGGGATCCAACTCACAGCCAGGTCTCCCTCGGTCGCGACACCGCGT
GCTCTGTCCGGGTCCTGGAGATGAAGAGAGTGGTCATGTGGTTTACGTCG
CACACGCGCAGTGACTCGCACTCCCACGAGAACGTACCACCAGCTGCTCT
GGGAGAGGAGTCGTTGTGGTTTCTTATGCGAATAGTTGCGTTGATTTGGT
CTGCTAGGTTTGCGAGTGCTTCACGGTGAGTTGATCCCGGGCTTCTGCCA
AAAGTTTGTCGTCGGTTTGCTAGTTTGTCCTTCCCCATTGACGAGGCACG
TCCTCGAGGGACGAGATTCCTCGACGGGATGTCCTCAACCTACTCGACTT
ATCTCGGTTCGTGTCCATATTCATGAGTCGGTCGTGTCGATTGCACGCCC
TTCTTGCATGGACCTGTTCCTCTCTGCAGTCATTTTCTGTCTAATCGTAT
GTCACGATGCTGTCCCCAGTATTCATTTTCCTCGTAGCCGTCGTCTTCGT
TCGTCGTGGCTCACTGCTTTTCTCTCTTGTTTCTCATCCACATGATCACT
GACCGGAGGTCAGTTTCGATACCTGCCGATCGGGTTCGGGGCTACGAAAC
GCGCAGCGGCCTCCCGCACACGGCGTACATCGACACCGCCAGGCGGCAGC
TCGAGGTCCTAGAGACCTGCCCGATCGACAGGGCCGGCAGGTGCTCCCTC
TTATTTTCGTACAACGGCAGGAAACCAAAGTGATATGCGACGATGATGAC
GCTACAGCCGTAGGTTCAAACAGCATGCGCGGGGGGTTGGTATTGCGAGG
GTCTGCTGCCTCTGGTCGATGTTCCTACCATGTGAGAAGGTTGAGATTTC
CCACGTCCTGCGAAAAAGCTGGTGGCTAGGTGCGCAGTAGGGTGGCATCC
CGCTTTATACGCGATCAATGTCGGTCGCCATCATCATCCCCCTCTCCTAT
TGTATATGTCAACGAATATCCTGTGGGTGTTATCATGTTCCCCCTTTCGT
TCGTCGATGTTCGCTCTGCCCCCCTCCCGCACCCTACTGTCCCATCAAAG
GTTGTAGCTAACGGTTTTCAATGTTCTTCACGACCGAATGCCATCTATGA
AGGCTAGACGCGGTGTCCATGTTTGAGCTGCCGTTGTACCAATGCCCTCC
TTCCCCTCCCTCTTCCTTCTCCCAATTTTAATCACGAGCTGTTTTCTTTA
TCTCGAACCGGACAATCAGCTACGGCTTGCTGTTCCAGGGCAGCACCATA
GACAAAGGCCCCAGGACCACGATCTGGAAGCAAATGAC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig90:67554..70091+ >mRNA_E-siliculosus-1a_M_contig90.17111.1 ID=mRNA_E-siliculosus-1a_M_contig90.17111.1|Name=mRNA_E-siliculosus-1a_M_contig90.17111.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1062bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:67554..70091+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCTATCTTCGGCGCCTTCGAACCCAGGTTCCTGGGCTACGCCGCGGAC
GCCGGGTCGTGGAGCCCCCTCCCTGGCGGCTTCAGCCGTTGGTTGGAGAG
GTACCACCGGGTTGCCCTGCACGGCAGTCGGCCGTTCTTGTTACTGTCCA
CATGCTATCTTCGGCGCCTTCGAACCCAGGTTCCTGGGCTACGCCGCGGA
CGCCGGGTCGTGGAGCCCCCTCCCTGGCGGCTTCAGCCGTTGGTTGGAGA
GGTACCACCGGGTTGCCCTGCACGGCAGTCGGCCGTTCTTGTTACTGTCC
ACGGCGACGACGTGTGCGCCTTGGAGAAGGAGCTGTCTCTGGGGGTCAGG
GTGCCGTCGGCGGCGGACGGTGTCACGCCCAACGACATTATCGGCAACAT
CGCGGAGGAGCCTCCGGCGTCGGCGTCGGCCCGAAATCGGCGCCAGGCCA
CAAACGAGCGCGACAAAGGGCGACGACGTGTGCGCCTTGGAGAAGGAGCT
GTCTCTGGGGGTCAGGGTGCCGTCGGCGGCGGACGGTGTCACGCCCAACG
ACATTATCGGCAACATCGCGGAGGAGCCTCCGGCGTCGGCGTCGGCCCGA
AATCGGCGCCAGGCCACAAACGAGCGCGACAAAGTTTCGATACCTGCCGA
TCGGGTTCGGGGCTACGAAACGCGCAGCGGCCTCCCGCACACGGCGTACA
TCGACACCGCCAGGCGGCAGCTCGAGGTCCTAGAGACCTGCCCGATCGAC
AGGGCCGGCAGGTGCTCCCTCTTATTTTCTTTCGATACCTGCCGATCGGG
TTCGGGGCTACGAAACGCGCAGCGGCCTCCCGCACACGGCGTACATCGAC
ACCGCCAGGCGGCAGCTCGAGGTCCTAGAGACCTGCCCGATCGACAGGGC
CGGCAGGTGCTCCCTCTTATTTTCCTACGGCTTGCTGTTCCAGGGCAGCA
CCATAGACAAAGGCCCCAGGACCACGATCTGGAAGCAAATGACCTACGGC
TTGCTGTTCCAGGGCAGCACCATAGACAAAGGCCCCAGGACCACGATCTG
GAAGCAAATGAC back to top
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