mRNA_E-siliculosus-1a_M_contig90.17110.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig90.17110.1
Unique NamemRNA_E-siliculosus-1a_M_contig90.17110.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig90.17110.1 vs. uniprot
Match: D8LKH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH4_ECTSI)

HSP 1 Score: 316 bits (810), Expect = 5.130e-108
Identity = 157/169 (92.90%), Postives = 160/169 (94.67%), Query Frame = 1
Query:    1 MRGKLKHIQAYITSLEYNYTGEAFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTADMAEAGPQFFHSVDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDTLMYKELKYELFSKLVGDFRESYASSWHRLEQVWVGFPLPHDISSNVAIKWKVM 507
            MRGKLKHIQ+YITSLEYNYTGEAFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTADMAE        VDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRD LMYKELKY+LFSKLVGDFRESYASSWHRLEQVWVGFPLPHDISSNVAIKWKV+
Sbjct:    1 MRGKLKHIQSYITSLEYNYTGEAFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTADMAE--------VDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDKLMYKELKYDLFSKLVGDFRESYASSWHRLEQVWVGFPLPHDISSNVAIKWKVL 161          
BLAST of mRNA_E-siliculosus-1a_M_contig90.17110.1 vs. uniprot
Match: A0A6H5JJ50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ50_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 7.580e-98
Identity = 146/175 (83.43%), Postives = 150/175 (85.71%), Query Frame = 1
Query:   49 YNYTGEAFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTADMAEAGPQFFHS----------------------VDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDTLMYKELKYELFSKLVGDFRESYASSWHRLEQVWVGFPLPHDISSNVAIKWKVM 507
            YNYTGEAFFVKKKDRGFRHVTSTAK IIREALPIQCVEAVFVGAYLTADMAEAGP FF +                      VDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDTLMYKELKYELFSKLVGDFRESYAS+WHRLEQVWVGFPLPHDISSNVA+KWKV+
Sbjct:    5 YNYTGEAFFVKKKDRGFRHVTSTAKQIIREALPIQCVEAVFVGAYLTADMAEAGPLFFQTLADSSTLSPYLRRFLLPGYMVGVDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDTLMYKELKYELFSKLVGDFRESYASNWHRLEQVWVGFPLPHDISSNVAVKWKVL 179          
BLAST of mRNA_E-siliculosus-1a_M_contig90.17110.1 vs. uniprot
Match: A0A835YRP7_9STRA (Vasohibin-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRP7_9STRA)

HSP 1 Score: 192 bits (487), Expect = 2.210e-58
Identity = 90/168 (53.57%), Postives = 121/168 (72.02%), Query Frame = 1
Query:    1 MRGKLKHIQAYITSLEYNYTGEAFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTADMAEAGPQFFHSVDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDTLMYKELKYELFSKLVGDFRESYASSWHRLEQVWVGFPLPHDISSNVAIKWKV 504
            +R KLK +Q YI + EYN+TG+ ++  KK RGF HV + A+ I+REALPIQCVEA F+GAYLT D+ +        V+R+P+ F+S+L+G  +RHIVLAV SGGKWG+LG+SRRD L YKELKY     LV +F  +Y S WH+L+ +++G PLP + S N  I+WKV
Sbjct:   31 LRDKLKQLQKYIEAFEYNHTGKCYYSTKKFRGFAHVANVAQDIMREALPIQCVEATFLGAYLTCDLRD--------VERYPLSFKSALEGHEHRHIVLAVTSGGKWGALGISRRDCLAYKELKYSSLGALVAEFAAAYTSCWHQLQAIYLGLPLPRNPSCNAPIRWKV 190          
BLAST of mRNA_E-siliculosus-1a_M_contig90.17110.1 vs. uniprot
Match: W4G7H5_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G7H5_9STRA)

HSP 1 Score: 176 bits (446), Expect = 2.510e-49
Identity = 92/209 (44.02%), Postives = 127/209 (60.77%), Query Frame = 1
Query:    1 MRGKLKHIQAYITSLEYNYTGEAFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTADMAE-AGPQFFHSVDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDTLMYKELKYELFSKLVGDFRESYASSWHRLEQVWVGFPLPHDISSNVAIKWKVMRANVGTDPEWSSTGDDLNRFVACANSLFESFITTGKLPD 624
            +R K+  IQ Y+ +LEYNYTG+ +F   K+R  + +  TAK II +ALPIQC+EAVF+ AYLTA   E  G  F H +DR P+ F++S  G  +RHIVLA++    WG+LGLSR   LM KELK++  S LVG+F E Y +  H + +V+VGFP  HDI S   ++W+V+   +   P W +    L+ F    + L       G LPD
Sbjct:   41 VRTKMAAIQTYMNALEYNYTGKMYFDVSKNRSHKSIYGTAKDIIHDALPIQCLEAVFLAAYLTAGGPEYEGATFNHQIDRIPISFKTSSGGTTFRHIVLAIKHQHLWGALGLSRSPGLMNKELKFKSLSDLVGNFVEQYTAVCHDVIKVYVGFPFSHDIHSTERVEWRVLNIKLSIHP-WDNVAAQLDLFTREYSELMSHLHRVGDLPD 248          
BLAST of mRNA_E-siliculosus-1a_M_contig90.17110.1 vs. uniprot
Match: A0A1W0A7K4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7K4_9STRA)

HSP 1 Score: 174 bits (442), Expect = 7.780e-49
Identity = 90/210 (42.86%), Postives = 126/210 (60.00%), Query Frame = 1
Query:    1 MRGKLKHIQAYITSLEYNYTGEAFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTAD--MAEAGPQFFHSVDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDTLMYKELKYELFSKLVGDFRESYASSWHRLEQVWVGFPLPHDISSNVAIKWKVMRANVGTDPEWSSTGDDLNRFVACANSLFESFITTGKLPD 624
            +R KL  IQ Y+ +LEYNYTG+ +F   K R ++ +  TAK II E+LPIQC+EAVFV AYLTA+      G      VDR P+ F+S   G V+RHIVL ++    WG+LGLSR   LM KELKY+ FS+L+ D+ E +A   H + +++VGFP  HDI S+  ++W+V+   +   P W +     + F    + L       G+LPD
Sbjct:   38 VRSKLHAIQTYLNALEYNYTGKLYFNVNKHRSYKSIYGTAKEIIHESLPIQCLEAVFVAAYLTANGNTEYEGMNPNQQVDRVPISFKSRSGGTVFRHIVLGIKHQHMWGALGLSRNADLMNKELKYKNFSELLADYIEHFAKCCHEVTKIYVGFPFSHDIHSSEKVQWRVLNIKISDHP-WDAVAAQFDLFTREHSELMSHLHRVGELPD 246          
BLAST of mRNA_E-siliculosus-1a_M_contig90.17110.1 vs. uniprot
Match: A0A1V9ZEI7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZEI7_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.670e-48
Identity = 92/210 (43.81%), Postives = 129/210 (61.43%), Query Frame = 1
Query:    1 MRGKLKHIQAYITSLEYNYTGEAFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTAD-MAE-AGPQFFHSVDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDTLMYKELKYELFSKLVGDFRESYASSWHRLEQVWVGFPLPHDISSNVAIKWKVMRANVGTDPEWSSTGDDLNRFVACANSLFESFITTGKLPD 624
            ++ KL  IQAY+++LEYNYTG  +F   K+R ++ +  TAK II EALPIQC+EAVFV AYLTA  M E  G      +DR P+ F+S      +RHIVL VR    WG+LGLSR   LM K+LKY+ FS LV D+ E++    H++ +V+VGFP  HDI S+  ++W+V+   +   P W +    ++ F   ++ L       G+LPD
Sbjct:   40 IKAKLHAIQAYLSALEYNYTGRLYFNVNKNRSYKSIYGTAKEIISEALPIQCLEAVFVAAYLTAHGMPEYEGLNPSQQIDRVPISFKSRSGDSTFRHIVLGVRHQHVWGALGLSRSPALMNKDLKYKSFSDLVADYIENFVKCQHQVTKVYVGFPFSHDIHSSEKVQWRVLNIKIVEHP-WEAVAAQIDLFTRESSELMSHLHRVGELPD 248          
BLAST of mRNA_E-siliculosus-1a_M_contig90.17110.1 vs. uniprot
Match: A0A067CTS0_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CTS0_SAPPC)

HSP 1 Score: 173 bits (438), Expect = 2.900e-48
Identity = 86/210 (40.95%), Postives = 133/210 (63.33%), Query Frame = 1
Query:    1 MRGKLKHIQAYITSLEYNYTGEAFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTAD-MAE-AGPQFFHSVDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDTLMYKELKYELFSKLVGDFRESYASSWHRLEQVWVGFPLPHDISSNVAIKWKVMRANVGTDPEWSSTGDDLNRFVACANSLFESFITTGKLPD 624
            ++ KL  +Q Y+ +LEYNYTG+ +F   K R ++ +  TAK I+ EALPIQC+EAVFV AYLTA  M E  G    H ++R P+ F+S+  G V+RHIVL V+    WG+LGLSR  +LM K+LKY+ FS+L+ D+ E+++   H + +++VGFP  HDI S+  ++W+V+   +   P W +     + F+  ++ +       G+LP+
Sbjct:   36 IKTKLHAVQTYLNALEYNYTGKLYFNVNKHRSYKSIYGTAKEIMAEALPIQCLEAVFVAAYLTAHGMPEYEGMNPSHQIERVPISFKSTSGGSVFRHIVLGVKHQHLWGALGLSRNPSLMNKDLKYKHFSELLADYVENFSKCHHTVTKIYVGFPFSHDIHSSEKVQWRVLNIKISEHP-WDAVAGQFDLFLRESSEIMSHLHRVGELPE 244          
BLAST of mRNA_E-siliculosus-1a_M_contig90.17110.1 vs. uniprot
Match: A0A2D4BXV4_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXV4_PYTIN)

HSP 1 Score: 171 bits (432), Expect = 1.180e-47
Identity = 90/208 (43.27%), Postives = 125/208 (60.10%), Query Frame = 1
Query:    1 MRGKLKHIQAYITSLEYNYTGEAFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTADMAEAGPQFFHSVDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDTLMYKELKYELFSKLVGDFRESYASSWHRLEQVWVGFPLPHDISSNVAIKWKVMRANVGTDPEWSSTGDDLNRFVACANSLFESFITTGKLPD 624
            ++ +L  +Q Y+ SLEYNYTG  +F   K+R F+ + +TAK I  E LPIQC+EAVF+ AY+TA+        F  ++RFP+ F+S     V+RHIVLAVR   KWG+LGLSR + LMYKEL++   S+L  DF   + S  H + ++ VGFP PHDI S+  ++W+V+   V T  EWS     L+     A  L       G +PD
Sbjct:   42 IKTRLMAVQNYLNSLEYNYTGTLYFDVNKNRSFKSIVNTAKEIAAEMLPIQCLEAVFLAAYITAN--------FPDLERFPLSFKSQAGNSVHRHIVLAVRHQNKWGALGLSRSERLMYKELRFNSLSELTQDFCHGFESVCHVVTKLHVGFPFPHDIHSSEKVEWRVLNVPVDT-VEWSHVATHLDAXAKEAGDLLAFRRAKGAMPD 240          
BLAST of mRNA_E-siliculosus-1a_M_contig90.17110.1 vs. uniprot
Match: K3X8V2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8V2_GLOUD)

HSP 1 Score: 167 bits (423), Expect = 3.730e-47
Identity = 89/209 (42.58%), Postives = 130/209 (62.20%), Query Frame = 1
Query:    1 MRGKLKHIQAYITSLEYNYTGEAFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTADMAEAGPQFFHSVDRFPVCFRSSLDGRVYRHIVLAVR-SGGKWGSLGLSRRDTLMYKELKYELFSKLVGDFRESYASSWHRLEQVWVGFPLPHDISSNVAIKWKVMRANVGTDPEWSSTGDDLNRFVACANSLFESFITTGKLPD 624
            ++ +L  IQ  I +LEYNYTG  +F   K+R F+ + STAK I+ E LPIQC+EAVF+ +YLTA+ ++        ++RFP+ F+S     V+RHI+LAVR    KWG+LGLSR D LMYKELKY   S+L+ DF   +   +HR+ +V+VGFP  HDI S+  ++W+VM  ++  + EW+      + F   A  +     + G LP+
Sbjct:   39 IKTRLIGIQHVINTLEYNYTGTQYFDVNKNRSFKSIVSTAKDIVNETLPIQCLEAVFLASYLTANASD--------LERFPISFKSIAGTNVHRHIILAVRYQHNKWGALGLSRSDKLMYKELKYASLSELIQDFCHEFELLYHRVLKVYVGFPFSHDIHSSEKVEWRVMNISLEFN-EWTDAAQHFDSFAKDAVDILAYKKSKGVLPE 238          
BLAST of mRNA_E-siliculosus-1a_M_contig90.17110.1 vs. uniprot
Match: A0A485KK56_9STRA (Aste57867_8397 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KK56_9STRA)

HSP 1 Score: 172 bits (437), Expect = 7.100e-46
Identity = 89/210 (42.38%), Postives = 129/210 (61.43%), Query Frame = 1
Query:    1 MRGKLKHIQAYITSLEYNYTGEAFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTADMAEA-GPQFFHSVDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDTLMYKELKYELFSKLVGDFRESYASSWHRLEQVWVGFPLPHDISSNVAIKWKVMRANVGTDPEWSSTGDDLNRFVACANSLFESFITTGKLPDH 627
            +R KL  IQ Y+ +LEYNYTG+ +F   K+R  + +  TAK II EALPIQC+EAVFV AYLTA   +  G  F   VDR P+ F++   G V+RHIVLA++    WG+LGLSR   LM K+LK++  S LV ++ E+Y   +H++ +V++GFP  HDI S   ++W+V+   +   P W++    L+ F      L       G+LP++
Sbjct:   38 VRAKLFSIQNYLNALEYNYTGKIYFDVSKNRSHKSIYGTAKEIIHEALPIQCLEAVFVAAYLTAGGPDYDGGSFSQHVDRIPISFKTQSGGTVFRHIVLAIKHQHLWGALGLSRNAGLMTKDLKFKCLSDLVQNYMENYNKCYHQVVKVYIGFPFSHDIHSTEKVEWRVLNIKLSIHP-WTTVASQLDYFSREYPELMSHLHRVGELPEY 246          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig90.17110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKH4_ECTSI5.130e-10892.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJ50_9PHAE7.580e-9883.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YRP7_9STRA2.210e-5853.57Vasohibin-domain-containing protein n=1 Tax=Tribon... [more]
W4G7H5_9STRA2.510e-4944.02Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A1W0A7K4_9STRA7.780e-4942.86Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A1V9ZEI7_9STRA1.670e-4843.81Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067CTS0_SAPPC2.900e-4840.95Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A2D4BXV4_PYTIN1.180e-4743.27Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
K3X8V2_GLOUD3.730e-4742.58Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A485KK56_9STRA7.100e-4642.38Aste57867_8397 protein n=1 Tax=Aphanomyces stellat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig90contigE-siliculosus-1a_M_contig90:51845..53771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Stop0
Start1
Cds size672
Model size672
Exons5
Ec32 orthologEc-16_002970.1
Ec32 ortholog descriptionVasohibin
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2BW4P@1,2QPPX@2759
EggNOG free text desc.negative regulation of lymphangiogenesis
GOsGO:0000003,GO:0000768,GO:0001525,GO:0001568,GO:0001701,GO:0001890,GO:0001892,GO:0001936,GO:0001937,GO:0001938,GO:0001944,GO:0003006,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006949,GO:0006950,GO:0007275,GO:0008150,GO:0008284,GO:0008285,GO:0009611,GO:0009653,GO:0009790,GO:0009792,GO:0009893,GO:0009987,GO:0010468,GO:0010594,GO:0010596,GO:0010604,GO:0010628,GO:0010632,GO:0010633,GO:0012505,GO:0016043,GO:0016525,GO:0019222,GO:0022414,GO:0022603,GO:0030334,GO:0030336,GO:0032501,GO:0032502,GO:0032879,GO:0035239,GO:0035295,GO:0040012,GO:0040013,GO:0042127,GO:0043009,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043535,GO:0043537,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0045026,GO:0045177,GO:0045765,GO:0045766,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048583,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0050678,GO:0050679,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051094,GO:0051239,GO:0051240,GO:0051241,GO:0051270,GO:0051271,GO:0060255,GO:0060674,GO:0060711,GO:0060716,GO:0061024,GO:0061025,GO:0061458,GO:0065007,GO:0071840,GO:0072358,GO:0072359,GO:0080134,GO:0080135,GO:0090342,GO:1901342,GO:1901343,GO:1901490,GO:1901491,GO:1904018,GO:2000026,GO:2000145,GO:2000146,GO:2000181,GO:2000772
Preferred nameVASH1
Seed eggNOG ortholog2880.D8LKH4
Seed ortholog evalue4.1e-84
Seed ortholog score317.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig90.17110.1prot_E-siliculosus-1a_M_contig90.17110.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig90 51845..53771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936420.2023373-CDS-E-siliculosus-1a_M_contig90:51844..518911622936420.2023373-CDS-E-siliculosus-1a_M_contig90:51844..51891Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 51845..51891 +
1696251070.2636106-CDS-E-siliculosus-1a_M_contig90:51844..518911696251070.2636106-CDS-E-siliculosus-1a_M_contig90:51844..51891Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 51845..51891 +
1622936420.2202027-CDS-E-siliculosus-1a_M_contig90:52289..524701622936420.2202027-CDS-E-siliculosus-1a_M_contig90:52289..52470Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 52290..52470 +
1696251070.275039-CDS-E-siliculosus-1a_M_contig90:52289..524701696251070.275039-CDS-E-siliculosus-1a_M_contig90:52289..52470Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 52290..52470 +
1622936420.2363899-CDS-E-siliculosus-1a_M_contig90:52749..528891622936420.2363899-CDS-E-siliculosus-1a_M_contig90:52749..52889Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 52750..52889 +
1696251070.2839773-CDS-E-siliculosus-1a_M_contig90:52749..528891696251070.2839773-CDS-E-siliculosus-1a_M_contig90:52749..52889Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 52750..52889 +
1622936420.2579045-CDS-E-siliculosus-1a_M_contig90:53081..532141622936420.2579045-CDS-E-siliculosus-1a_M_contig90:53081..53214Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 53082..53214 +
1696251070.2949102-CDS-E-siliculosus-1a_M_contig90:53081..532141696251070.2949102-CDS-E-siliculosus-1a_M_contig90:53081..53214Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 53082..53214 +
1622936420.2770255-CDS-E-siliculosus-1a_M_contig90:53600..537711622936420.2770255-CDS-E-siliculosus-1a_M_contig90:53600..53771Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 53601..53771 +
1696251070.305631-CDS-E-siliculosus-1a_M_contig90:53600..537711696251070.305631-CDS-E-siliculosus-1a_M_contig90:53600..53771Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 53601..53771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig90.17110.1

>prot_E-siliculosus-1a_M_contig90.17110.1 ID=prot_E-siliculosus-1a_M_contig90.17110.1|Name=mRNA_E-siliculosus-1a_M_contig90.17110.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=224bp
MRGKLKHIQAYITSLEYNYTGEAFFVKKKDRGFRHVTSTAKLIIREALPI
QCVEAVFVGAYLTADMAEAGPQFFHSVDRFPVCFRSSLDGRVYRHIVLAV
RSGGKWGSLGLSRRDTLMYKELKYELFSKLVGDFRESYASSWHRLEQVWV
GFPLPHDISSNVAIKWKVMRANVGTDPEWSSTGDDLNRFVACANSLFESF
ITTGKLPDHPLLSNSTDTSSSSNN
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mRNA from alignment at E-siliculosus-1a_M_contig90:51845..53771+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig90.17110.1 ID=mRNA_E-siliculosus-1a_M_contig90.17110.1|Name=mRNA_E-siliculosus-1a_M_contig90.17110.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1927bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:51845..53771+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGGGGGAAACTGAAGCATATCCAGGCCTACATCACGTCTCTCGAGTG AGCTCATCTTCGTGGTCTATACTCAGCAAGAGGGCGGAGCACTGGTAGCA GCTCGTTGTCGCCTTTGCACTTATACGTCGTAGAAGCCACTAGTAATCAA ATGCGCATGTGTTGGTGACTCGATGCCTTCACCAGCCAAACACGCCCCGG GCAGTAGGCTGCGGCGGATAGATGTGGATCATTGGTAGCGATCGCTCGTG AGATACTGTAACAAGTTGTAGATAGCCCGTGCGTACAATCTGATCCTTGT ATTGGAATGGTGTTCTCTGTTCAAGCGGTTCATTGTATCATCCTCCGCAA TTGCGAACAAGAGGCGTGCATTCAAGTACATTGAGAATCTACCGTAGCCC GAAAATGTACAATTGCATCGTATCCAATATATCACGTCACCCCAGGTACA ACTACACGGGCGAAGCCTTCTTCGTGAAAAAGAAGGACCGCGGGTTCCGA CACGTGACGTCCACAGCCAAGCTGATTATCCGCGAGGCGCTGCCGATCCA ATGCGTCGAGGCCGTCTTCGTCGGGGCGTACCTTACCGCGGACATGGCTG AGGCAGGTCCTCAATTTTTTCATTCCGTAGGAGACTCGTCCACGTTGTCT CTATAATCACGTCGCGTCTGCTGGGTTACATGGTGGGTGTGAGTCACTAC ACCCCATGCTCTGTGATCCTGTATGAACCCCTTTACTGCGGAAAAGCAAA ACACAGGTGATATATACCAATAATGTAGAAATCGATATCTCATTCGTTCC CAACCCCCGAAAACTAGTTGCTCCCTACGTTGATTACAGCCGTTTCATAC AAACCCTCCTGCCCCTCTCTGCGCGACAACCTGAAATCTGTATCACCGAC CACAGGTCGATCGTTTTCCTGTATGCTTCCGATCGTCTCTGGATGGGCGC GTGTACAGGCACATTGTCTTAGCCGTGCGTAGTGGGGGGAAGTGGGGTTC TCTGGGTCTGAGTCGCCGCGACACGCTCATGTACAAGGAACTGAAGTGAG TCAGTGCCTTGTACGACAAGTGATGGGTAGATTGTCCTTGCCCTAACGGG CACTCTAACTTGTACGACGTGATTCTCCAATAAGATCTACAAGGTTTCTC CCGTAGTAGTGATGACTTATGTCCATATACATAGGATATCAACTTCACAC CGACGCACCATGCCACGCACGGGCATGCATGTTGCAGGTACGAGCTGTTT TCGAAGCTTGTAGGCGACTTCAGGGAATCGTACGCTAGCAGCTGGCACCG CCTGGAACAGGTCTGGGTAGGCTTCCCTCTTCCCCATGACATATCTTCCA ACGTGGCCATCAAGTGGAAGGTATTGGTGGTGTAAGTTTTCTTCCATGTG GCCCTGAGCTGTTGGGACAAACGACATGAAATCAAAATATTGGCAGTAGT TCACGGACGATAGAAATCTGGCACCAGACCTGCGACTCGGTTCCACTCGC GGGGGGCTGATATTGTGTTTTCGAGTAAGCGAGTCTTCAAATATGAACCA CAGCGTCATAGTTTCATCCCCTGGCACGGCGATAACCATGCCGCGAGCCG TCGGGCACATCGGCGAGATGTGGTCACGCCACTTGTATTTCCTTGTTCCG ACCTATGGCAACTGTATTTACGTGTCGGCACGAGACCCCCAAAAGCTAGC GCCACTCTGCCTGCCATAAAATGTCATCAGCACCTGTGCTGCTTTCACTG GTCCAGGTGATGCGAGCGAATGTCGGAACGGATCCGGAATGGTCGTCAAC CGGAGACGATCTCAATCGATTCGTTGCCTGCGCGAACAGCCTTTTCGAGA GCTTCATCACCACTGGGAAGCTGCCCGATCACCCTCTCCTCAGCAACAGC ACCGACACCAGCAGCAGCAGCAACAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig90:51845..53771+

>mRNA_E-siliculosus-1a_M_contig90.17110.1 ID=mRNA_E-siliculosus-1a_M_contig90.17110.1|Name=mRNA_E-siliculosus-1a_M_contig90.17110.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1344bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:51845..53771+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGGGGGAAACTGAAGCATATCCAGGCCTACATCACGTCTCTCGAATG
AGGGGGAAACTGAAGCATATCCAGGCCTACATCACGTCTCTCGAGTACAA
CTACACGGGCGAAGCCTTCTTCGTGAAAAAGAAGGACCGCGGGTTCCGAC
ACGTGACGTCCACAGCCAAGCTGATTATCCGCGAGGCGCTGCCGATCCAA
TGCGTCGAGGCCGTCTTCGTCGGGGCGTACCTTACCGCGGACATGGCTGA
GGCAGGTCCTCAATTTTTTCATTCCGTACAACTACACGGGCGAAGCCTTC
TTCGTGAAAAAGAAGGACCGCGGGTTCCGACACGTGACGTCCACAGCCAA
GCTGATTATCCGCGAGGCGCTGCCGATCCAATGCGTCGAGGCCGTCTTCG
TCGGGGCGTACCTTACCGCGGACATGGCTGAGGCAGGTCCTCAATTTTTT
CATTCCGTCGATCGTTTTCCTGTATGCTTCCGATCGTCTCTGGATGGGCG
CGTGTACAGGCACATTGTCTTAGCCGTGCGTAGTGGGGGGAAGTGGGGTT
CTCTGGGTCTGAGTCGCCGCGACACGCTCATGTACAAGGAACTGAAGTCG
ATCGTTTTCCTGTATGCTTCCGATCGTCTCTGGATGGGCGCGTGTACAGG
CACATTGTCTTAGCCGTGCGTAGTGGGGGGAAGTGGGGTTCTCTGGGTCT
GAGTCGCCGCGACACGCTCATGTACAAGGAACTGAAGTACGAGCTGTTTT
CGAAGCTTGTAGGCGACTTCAGGGAATCGTACGCTAGCAGCTGGCACCGC
CTGGAACAGGTCTGGGTAGGCTTCCCTCTTCCCCATGACATATCTTCCAA
CGTGGCCATCAAGTGGAAGGTACGAGCTGTTTTCGAAGCTTGTAGGCGAC
TTCAGGGAATCGTACGCTAGCAGCTGGCACCGCCTGGAACAGGTCTGGGT
AGGCTTCCCTCTTCCCCATGACATATCTTCCAACGTGGCCATCAAGTGGA
AGGTGATGCGAGCGAATGTCGGAACGGATCCGGAATGGTCGTCAACCGGA
GACGATCTCAATCGATTCGTTGCCTGCGCGAACAGCCTTTTCGAGAGCTT
CATCACCACTGGGAAGCTGCCCGATCACCCTCTCCTCAGCAACAGCACCG
ACACCAGCAGCAGCAGCAACAACGTGATGCGAGCGAATGTCGGAACGGAT
CCGGAATGGTCGTCAACCGGAGACGATCTCAATCGATTCGTTGCCTGCGC
GAACAGCCTTTTCGAGAGCTTCATCACCACTGGGAAGCTGCCCGATCACC
CTCTCCTCAGCAACAGCACCGACACCAGCAGCAGCAGCAACAAC
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