mRNA_E-siliculosus-1a_M_contig9.17097.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.17097.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.17097.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.17097.1 vs. uniprot
Match: D7G4M2_ECTSI (Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M2_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 3.400e-51
Identity = 100/133 (75.19%), Postives = 113/133 (84.96%), Query Frame = 1 
Query:  262 VKFKDE--ELTLTYQKDGGDDSSQCKGVRQLSGGERSFATLALLLALRSCHDCPFRVMDEFDVFLDAVSRDVAIKQVLEFAGRDSTRQFILITPQDLSSVTASDTCKIIKMQPPRKGDHNQTTLEEAFSAGAS 654
            V+F +E   L LTYQKD  D++SQC  V+ LSGGERSFATLALLLAL   H+CPFRVMDEFDVF+DA+SR++AIKQV+EFA RDS+RQFILITPQDLSSVTASD CKIIKMQPPRKGDHNQTTLEE    G +
Sbjct: 1134 VRFDNECQTLGLTYQKDSSDNASQCSDVKLLSGGERSFATLALLLALGQSHECPFRVMDEFDVFMDAMSRNIAIKQVIEFAKRDSSRQFILITPQDLSSVTASDACKIIKMQPPRKGDHNQTTLEETLGGGGA 1266
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.17097.1 vs. uniprot
Match: D7G4M1_ECTSI (Smc-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M1_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 2.700e-46
Identity = 93/133 (69.92%), Postives = 112/133 (84.21%), Query Frame = 1 
Query:  262 VKF--KDEELTLTYQKDGGDDSSQCKGVRQLSGGERSFATLALLLALRSCHDCPFRVMDEFDVFLDAVSRDVAIKQVLEFAGRDSTRQFILITPQDLSSVTASDTCKIIKMQPPRKGDHNQTTLEEAFSAGAS 654
            VKF  K + L L+YQ    +D+S+C+ VRQLSGGE+S+ATLALLL+L + HDCPFRVMDEFDVF+DAVSRD AI +VL+FA R+  +QFI ITPQDLSSVT+SDTCKIIKMQPPRKGDHNQTTL E+F + +S
Sbjct: 1035 VKFNHKKKTLGLSYQSQAHNDTSKCRDVRQLSGGEKSYATLALLLSLGAHHDCPFRVMDEFDVFMDAVSRDHAILEVLKFAKRNKDKQFIFITPQDLSSVTSSDTCKIIKMQPPRKGDHNQTTLTESFGSSSS 1167
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.17097.1 vs. uniprot
Match: F0YEV6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEV6_AURAN)

HSP 1 Score: 139 bits (351), Expect = 8.390e-35
Identity = 71/126 (56.35%), Postives = 93/126 (73.81%), Query Frame = 1 
Query:  265 KFKDEELTLTYQKDGGDDSSQCKGVRQLSGGERSFATLALLLALRSCHDCPFRVMDEFDVFLDAVSRDVAIKQVLEFAGRDSTRQFILITPQDLSSVTASDTCKIIKMQPPRKGDHNQTTLEEAFS 642
            + K++ L LTYQKD  DD++    +  LSGGERSF+TLA+L++L +  +CPFRVMDEFDVF+D VSR VA+K++++ A +   RQFI ITPQDLSS+  SD  KI KM PP +G   Q TLEEAF+
Sbjct:   67 EHKEKTLGLTYQKDNADDANIINNITSLSGGERSFSTLAMLISLGATIECPFRVMDEFDVFMDQVSRKVAMKELVDMAKKMENRQFIFITPQDLSSLPQSDILKIFKMNPPIRG---QRTLEEAFA 189
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.17097.1 vs. uniprot
Match: A0A7S2C434_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C434_9STRA)

HSP 1 Score: 122 bits (307), Expect = 7.810e-29
Identity = 71/157 (45.22%), Postives = 96/157 (61.15%), Query Frame = 1 
Query:  172 RDLQGKLSPNHFGTTAVTNGRNTAAAVDRNVKFKDEELTLTYQKDGGDDSSQCKGVRQLSGGERSFATLALLLALRSCHDCPFRVMDEFDVFLDAVSRDVAIKQVLEFAGRDSTRQFILITPQDLSSVTASDTCKIIKMQPPRKGDHNQTTLEEAFS 642
            R     L+ + F  T    G +     D + K     L++  QKD  D  SQ    + LSGGERS+ TL+LL++L  C +CPFRVMDEFDVF+DAVSR  A++ ++E   + + RQFI ITPQD+SSVT S   KI +M+PP + +  Q TLEEA +
Sbjct:   27 RKTVANLTNSKFDQTLNAKGHSGQVVFDYDKKT----LSVVVQKDNRDSQSQITDPKLLSGGERSYVTLSLLISLGECIECPFRVMDEFDVFMDAVSRKKALETLIETGKKYAHRQFIFITPQDISSVTPSPMVKIHRMRPPGRLN-GQQTLEEAMA 178
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.17097.1 vs. uniprot
Match: A0A7R9VE37_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VE37_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.590e-26
Identity = 68/157 (43.31%), Postives = 94/157 (59.87%), Query Frame = 1 
Query:  172 RDLQGKL-SPNHFGTTAVTNGRNTAAAVDRNVKFKDEELTLTYQKDGGDDSSQCKGVRQLSGGERSFATLALLLALRSCHDCPFRVMDEFDVFLDAVSRDVAIKQVLEFAGRDSTRQFILITPQDLSSVTASDTCKIIKMQPPRKGDHNQTTLEEAF 639
            R+ +G L    +     + N + +A  +D     +++ L L  QKD  ++ SQ K V+ LSGGERSF TLALLLAL    + PFRVMDEFDVFLD V+R +A+  ++  A     RQFI ITPQDLS++T     KII+M+PP +   N T  ++  
Sbjct:   19 REFRGYLVETTNISFDQMLNKKGSAGQLD--FDHENQTLNLIVQKDNSNEMSQTKDVKALSGGERSFTTLALLLALGESLETPFRVMDEFDVFLDPVARKIALDNMVSAAKSLEHRQFIFITPQDLSNLTTDPMLKIIRMKPPAR---NSTAAQQTL 170
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.17097.1 vs. uniprot
Match: A0A7S2WV71_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV71_9STRA)

HSP 1 Score: 120 bits (301), Expect = 3.040e-26
Identity = 71/150 (47.33%), Postives = 90/150 (60.00%), Query Frame = 1 
Query:  187 KLSPNHFGTTAVTNGRNTAAAVDRNVKFKDEELTLTYQKDGGDDSSQCKGVRQLSGGERSFATLALLLALRSCHDCPFRVMDEFDVFLDAVSRDVAIKQVLEFAGRDSTRQFILITPQDLSSVTASDTCKIIKMQPPRKGDHNQTTLEEA 636
            +L+   F  T    G+     +D     KD  L  + QKD  D  SQ + V+ LSGGERS+ATL+ L+AL    +CPFRVMDEFDVF+D VSR VA+  ++E       RQFILITPQDLSSVT +   KI K+  P++    Q TLE A
Sbjct:  207 ELTNTRFEQTLQRKGQTGRVQMDH----KDRTLEFSVQKDNRDSMSQIESVKLLSGGERSYATLSFLIALGDALECPFRVMDEFDVFMDQVSRRVALDLLIEQGRICRNRQFILITPQDLSSVTPAVDVKIFKLPDPKRTLAGQQTLEFA 352
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.17097.1 vs. uniprot
Match: A0A8J2X4G0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4G0_9STRA)

HSP 1 Score: 122 bits (305), Expect = 3.330e-25
Identity = 70/170 (41.18%), Postives = 104/170 (61.18%), Query Frame = 1 
Query:  127 VDLSPFSCARYTAMPRDLQG--KLSPNHFGTTAVTNGRNTAAAVDRNVKFKDEELTLTYQKDGGDDSSQCKGVRQLSGGERSFATLALLLALRSCHDCPFRVMDEFDVFLDAVSRDVAIKQVLEFAGRDSTRQFILITPQDLSSVTASDTCKIIKMQPPRKGDHNQTTLE 630
            + L   + ARY  + R  +   ++S   F       G + A   D     +D  L +TYQKD  D+++Q   ++ LSGGERSF+TLA+L++L +  +CPFRVMDEFDVF+D VSR VA++++++ A     RQF+ ITPQDLSS+  S+  K+ K+  P +G   Q TL+
Sbjct: 1008 IQLREDAHARYDRLRRIRKHICRMSNREFDKILQKKGSSGALRFDH----EDATLKMTYQKDNQDETTQIDNIQSLSGGERSFSTLAMLVSLGATIECPFRVMDEFDVFMDQVSRKVAMQELVDMAREMPNRQFVFITPQDLSSLPQSNHLKVFKLNAPIRG---QQTLD 1170
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.17097.1 vs. uniprot
Match: A0A7S1GII4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GII4_CYCTE)

HSP 1 Score: 111 bits (277), Expect = 3.390e-25
Identity = 64/128 (50.00%), Postives = 82/128 (64.06%), Query Frame = 1 
Query:  262 VKFKDEE--LTLTYQKDGGDDSSQCKGVRQLSGGERSFATLALLLALRSCHDCPFRVMDEFDVFLDAVSRDVAIKQVLEFAGRDSTRQFILITPQDLSSVTASDTCKIIKMQPPRKGDHNQTTLEEAF 639
            +KF  +E  L L  QKD  DDS Q   V+ LSGGERS+ TL+LLLAL    + PFRVMDEFDVFLDAV+R +A++ ++E A     RQFI ITPQDLSS+T     KI  M+ P +    + T ++  
Sbjct:   11 LKFDHKEGTLDLVVQKDSNDDS-QTDDVKALSGGERSYTTLSLLLALGERLETPFRVMDEFDVFLDAVARRLALRNLIEVAKHMENRQFIFITPQDLSSLTPDPKLKIHFMKAPERNASVEATTQQTL 137
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.17097.1 vs. uniprot
Match: A0A836CML4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML4_9STRA)

HSP 1 Score: 121 bits (304), Expect = 4.550e-25
Identity = 68/138 (49.28%), Postives = 89/138 (64.49%), Query Frame = 1 
Query:  271 KDEELTLTYQKDGGDDSSQCKG------------VRQLSGGERSFATLALLLALRSCHDCPFRVMDEFDVFLDAVSRDVAIKQVLEFAGRDSTRQFILITPQDLSSVTASDTCKIIKMQPPRKGDHNQTTLEEAFSAG 648
            K++ L+L  Q+   D+ SQ               +  +SGGERS+ATLALLLAL   H+ PFRVMDEFDVF+DA SR  A++Q+++ A  +  RQFI ITPQDL  + A D  +I KMQ PR+G   Q TL+EAF+AG
Sbjct: 1105 KNKTLSLEIQQSNLDEMSQSSNRPTAQAGSSATLLENMSGGERSYATLALLLALGKSHESPFRVMDEFDVFMDAQSRQAAMRQLVKHARENPGRQFIFITPQDLRGLEAGDDLRIFKMQSPREG---QVTLDEAFAAG 1239
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.17097.1 vs. uniprot
Match: A0A7S1V7X1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V7X1_9STRA)

HSP 1 Score: 116 bits (291), Expect = 8.510e-24
Identity = 66/136 (48.53%), Postives = 90/136 (66.18%), Query Frame = 1 
Query:  202 HFGTTAVTNGRNTAAAVDRNVKFKDEE--LTLTYQKDGGDDSSQCKGVRQLSGGERSFATLALLLALRSCHDCPFRVMDEFDVFLDAVSRDVAIKQVLEFAGRDSTRQFILITPQDLSSVTASDTCKIIKMQPPRK 603
            +FG   + N + ++ +    +KF  EE  L L  QKD  D++SQ   V+ LSGGERSF T+ALLL+L    + PFRVMDEFDVFLD V+R +A+K +++ A R + RQFI ITPQDLS +T  D  KI K++ P +
Sbjct:  470 NFGFDEMLNTKGSSGS----LKFDHEEHTLDLVVQKDSKDEASQTADVKALSGGERSFTTIALLLSLGERLETPFRVMDEFDVFLDPVARRLALKTLIDLAKRLNHRQFIFITPQDLSGLTPDDKLKIHKLKAPAR 601
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4M2_ECTSI3.400e-5175.19Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
D7G4M1_ECTSI2.700e-4669.92Smc-like protein n=1 Tax=Ectocarpus siliculosus Ta... [more]
F0YEV6_AURAN8.390e-3556.35Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2C434_9STRA7.810e-2945.22Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7R9VE37_9STRA1.590e-2643.31Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2WV71_9STRA3.040e-2647.33Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A8J2X4G0_9STRA3.330e-2541.18Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1GII4_CYCTE3.390e-2550.00Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A836CML4_9STRA4.550e-2549.28P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S1V7X1_9STRA8.510e-2448.53Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:2030098..2036072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size492
Model size1734
Exons4
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03019,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.D
EC3.6.4.13
EggNOG OGsCOG1196@1,KOG0250@2759
EggNOG free text desc.double-strand break repair via homologous recombination
GOsGO:0000228,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000793,GO:0000794,GO:0000803,GO:0001674,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007568,GO:0007569,GO:0008094,GO:0008150,GO:0008152,GO:0009410,GO:0009987,GO:0010033,GO:0010243,GO:0014070,GO:0014074,GO:0016043,GO:0016462,GO:0016604,GO:0016605,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019899,GO:0022402,GO:0030915,GO:0031000,GO:0031625,GO:0031974,GO:0031981,GO:0032200,GO:0032502,GO:0032991,GO:0033554,GO:0033676,GO:0034641,GO:0035061,GO:0035861,GO:0036270,GO:0042221,GO:0042493,GO:0042585,GO:0042592,GO:0042623,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0044237,GO:0044238,GO:0044260,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048869,GO:0050000,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051276,GO:0051304,GO:0051640,GO:0051641,GO:0051716,GO:0051983,GO:0051984,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0071139,GO:0071704,GO:0071840,GO:0090304,GO:0090398,GO:0090734,GO:0097159,GO:0097240,GO:0098687,GO:0106068,GO:1901360,GO:1901363,GO:1901698,GO:1902494,GO:1990234,GO:1990683
KEGG ModuleM00395
KEGG Pathwayko03018,map03018
KEGG TC2.A.57.1
KEGG koko:K12614,ko:K15014
Preferred nameSMC6
Seed eggNOG ortholog2880.D7G4M2
Seed ortholog evalue2.4e-49
Seed ortholog score201.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.17097.1prot_E-siliculosus-1a_M_contig9.17097.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 2030263..2034995 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936415.6167161-UTR-E-siliculosus-1a_M_contig9:2030097..20302621622936415.6167161-UTR-E-siliculosus-1a_M_contig9:2030097..2030262Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 2030098..2030262 +
1696251068.0287757-UTR-E-siliculosus-1a_M_contig9:2030097..20302621696251068.0287757-UTR-E-siliculosus-1a_M_contig9:2030097..2030262Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 2030098..2030262 +
1622936415.6807773-UTR-E-siliculosus-1a_M_contig9:2034995..20360721622936415.6807773-UTR-E-siliculosus-1a_M_contig9:2034995..2036072Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 2034996..2036072 +
1696251068.0897956-UTR-E-siliculosus-1a_M_contig9:2034995..20360721696251068.0897956-UTR-E-siliculosus-1a_M_contig9:2034995..2036072Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 2034996..2036072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936415.6282349-CDS-E-siliculosus-1a_M_contig9:2030262..20303541622936415.6282349-CDS-E-siliculosus-1a_M_contig9:2030262..2030354Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 2030263..2030354 +
1696251068.0481384-CDS-E-siliculosus-1a_M_contig9:2030262..20303541696251068.0481384-CDS-E-siliculosus-1a_M_contig9:2030262..2030354Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 2030263..2030354 +
1622936415.6395638-CDS-E-siliculosus-1a_M_contig9:2033394..20335591622936415.6395638-CDS-E-siliculosus-1a_M_contig9:2033394..2033559Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 2033395..2033559 +
1696251068.060123-CDS-E-siliculosus-1a_M_contig9:2033394..20335591696251068.060123-CDS-E-siliculosus-1a_M_contig9:2033394..2033559Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 2033395..2033559 +
1622936415.6540008-CDS-E-siliculosus-1a_M_contig9:2034100..20342181622936415.6540008-CDS-E-siliculosus-1a_M_contig9:2034100..2034218Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 2034101..2034218 +
1696251068.0694237-CDS-E-siliculosus-1a_M_contig9:2034100..20342181696251068.0694237-CDS-E-siliculosus-1a_M_contig9:2034100..2034218Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 2034101..2034218 +
1622936415.6685336-CDS-E-siliculosus-1a_M_contig9:2034878..20349951622936415.6685336-CDS-E-siliculosus-1a_M_contig9:2034878..2034995Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 2034879..2034995 +
1696251068.0789921-CDS-E-siliculosus-1a_M_contig9:2034878..20349951696251068.0789921-CDS-E-siliculosus-1a_M_contig9:2034878..2034995Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 2034879..2034995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.17097.1

>prot_E-siliculosus-1a_M_contig9.17097.1 ID=prot_E-siliculosus-1a_M_contig9.17097.1|Name=mRNA_E-siliculosus-1a_M_contig9.17097.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=164bp
MPRDLQGKLSPNHFGTTAVTNGRNTAAAVDRNVKFKDEELTLTYQKDGGD
DSSQCKGVRQLSGGERSFATLALLLALRSCHDCPFRVMDEFDVFLDAVSR
DVAIKQVLEFAGRDSTRQFILITPQDLSSVTASDTCKIIKMQPPRKGDHN
QTTLEEAFSAGAS*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig9:2030098..2036072+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.17097.1 ID=mRNA_E-siliculosus-1a_M_contig9.17097.1|Name=mRNA_E-siliculosus-1a_M_contig9.17097.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5975bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:2030098..2036072+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTACAAGAATGTCTGCCGTTGCCTCAAGCGCTACACGGCCGGATGTATGC
TCCATGGGGCTAGCCGATGCACTGCTGTCGAGGCCATTTGGGTTCGTGGC
GTATCTTCTGCATGCCTTTGAAGTAGGTGGACCTCTCTCCCTTCTCCTGT
GCGCGGTACACTGCCATGCCCAGGGACCTCCAAGGGAAACTGAGTCCCAA
CCACTTCGGGACTACGGCGGTGACAAATGGTCGTAACACAGCTGCAGCAG
TCGACCGGTGATGTACTACCGCAGCATCTATAACCTTGTTGGAACAATTG
AACGTCGTCGCTTGTGTGCGGTATTCTTCCCCAAATTGAATACTGCGTGC
GTTCCCTCCTCGGTCTCTTCCCTCGATACTGGCCTTGATCAACGGTTCGA
GGGGAGCGTGGTGTGTTCGTTACTTCGAAGTATAGTTTCCAATCTTCTCC
GTGTGCCTGGGCATGTCATGTACTCCGATACAGTAGTGTTCCGCAGTACC
AGGTACATAAAATCCACCTTGATGTTGGCATATCGTCGTGGGATCTCATT
CACAGCAGTGTGGTTGCAGTCCGCTTTCGTAGCTGGCTGTTGTAGACTCA
TCTCCGCTCGCATTTACCCTCCTCGCGGCAAAGATGCCTCTGGAGTACCG
CAAAGGGGTGTAAGATACCAACCCACCTTTGGCTTGTTGCCCCCATCTCC
AATGGAAATTTCCTAGTTGGAAATTGGTGTGGTGTATGTATCTGTATTGT
TGGCAACGACCGCATCAACAGGCTAGCCATTGTGCTTGGATGTCTTCTGC
TATCAGGACTCCGGTGCGTCTTTTCGGCAATTATCCTTTCCTGCTTCATA
TCCTTTCCACGCACAGGAAATTCGGTGTTGTTGCGAAATTTTGAACTGTA
AGAAAGAGAGAGAACGACGTCTGCTGATGGATGATGCAGACGGTTCCATC
CCTGGGTGCAAGGTCAAAGCTGTCTTCCCACCTGAGCCGTCTCTTCTCTA
AAAGCCCTATCAAATTCGTCTCTTCTCTAAAAGCCCTGTCAAATTCTCCC
TCGGATCGAGGAGACATTTGATAGGGCTTCTAGAGAAAACTGGCGGGAGC
GTGGTAAACGGGGCACGAAAAGGAGGATTTCAAGATTTACATTCCTCTGG
AGGGGAAGCGAGAAGCGAGACCTTCTAAACCAAGCCCTACAATGGTTGCC
CAGTGCCTCCTTTCACCGGTGCGCTAGTTGCTCTTCCGCGCTTGCCCCTA
GTAGCGCTTTCCACCCTAGGGTAGACACACGCGGCGCAACCTCGCTGTTG
AACCCGCGGCGTTATCGTCCCGCGATTCGACGCATCATTACCGTCATCCT
CCTCCGCTCACCAAAGCATCCACACTAGACTATTAATACTGTTGTCCCCG
TGTACCCCGGTACCCCCCTTGTCGAGTATGTCAAAGGAGGAGACAACCAT
TCTATTCTTCGCGATGTAAGGCAGGCGAAGAAGATGGGGACAAGGAGTGT
CCCCAAAGGCCGATCTAGCCCTAAAGGAGCTGAATTTGTACTTGATACTC
GCAGACAGGCGCACAGGAGTCTTTCGTGCTGAAGGGGCAGATGCCGGCTT
TCCACCGCCTAGTGCATTCCAAGGGCGAGTTTTGTTAGTGGGGGAAGATG
CACCGTTCGGGAGGCAAAAAATGACATACCTTTGCCTTCTGCAGGGTACA
CGTCTCCCCCCCCCCCGAACATAAGTCGTCGTCGGAAATGCTCATTTAGT
CTCATGGAGATTTTCGTTTCCTGCTTGCTTCTGCATCGTGTTATTTACTC
TAACTTTTCTCCTCTTGCCAACGATTATCTCACTTACAGTATGGTGTACC
AACTAGTGATTTACGTAGATCGACTGTCACCCTTGCGTTCTGTCCAACAT
CTGGTGTTGGTGGAGCCCCACGGTACCCAACAGCTTCTTGCTCCGAGCTT
TGTTCTGTGACATTTGAAAGCACGGTTTTGTGAGGAACGCGTGAGAGAGG
GAATCGACTAAATATGGAGTGGATGTTGAAGTAAAACCTGTTTTCGTGCA
TGAGAAATGGGGGCAGACAACGGGGAATGGTGAAGGTGGGTGGTGTGAAT
TTGTCGGGAGTGGAAATTCTGTTGACGTGCACGTCGAAGACCCATGTGGG
ACAGAGAAAGCAAGGGTGAATGGTCGGGGAGGAAAGACGTCAAGCAATAG
TTTGTTACATACTGTAGGTAAGACAGTTGTTGGTGAGAGGAGTACCGTAA
GTAAAAAAGACGATAATGAGGCAGGATACTCGCCAAAAGACGCACCGGAG
TCTTGCGAGGAGACGGGGAAGCTATGGAACCCTCACTGCCCAAAGTTTTC
CGAAGCCGACATATGTTAGGGGGATAAGACGTGCCCTGAAGAAGGCACTA
CTTCGCTCAGAATGGTGCGCAGTGTACGACACACGTTCGAGGAGGCATCA
GAAGTGTCATTTACCTCGAACGATGACCAACCGCAAGAGAACACGAGAAG
GATGCTCAGGATTTTTTTTTTCCTGAACAAAATGCTTTTGGCATCGATGT
GGCGACAGATTTTCACCCCGGGCAGCTTGCTGTGTACAATACATTACTAG
ATTTTGCGCATGCTGATAATGCTCAGGCGTGCCACCATACAGTCAGGTGC
GCCAGCCATCTCAGCGAACCGGCGATTGTCTGCTAGGTATTGATTGCGTG
TTGAGCTGGATGCCTTTCGTTGTCGGTATACATCTATACTTATGTGTGTG
TCTTACTTCCTCTTTTTCTTTGCGTCACCACCTGACTTGAAACACACTAC
TATTAAATTGTTTGTATCGAAGGAGATCTTGCGTGTACCGCAAGAGGCCG
AGAGATGGCACCACCCCCACCCCTAGACCGGCTTTCACAGCTCGATCGCT
CCACAACCAAGATTGTCTGTACCGTACCGTATACCGTACCGTGTACCGTA
CCGTGGTATTCCGTACGAGTCGTAGAGATGGCACCACCCCTAGGCCGGCT
TTTCAAAGCTCGACTGCTCCACAAGCAAGGGGGTGCAGAAATAGCCAGAT
AGTTGTACGGAAAGCCCTCTCGACGAGACGTTTCTAAAATCGCCACTTTT
GGTGCTCCTACAAGCTTGGCTGTGGAGCAAATAGAGGTTTGAAAATCTAG
GGAGGCTGCCATCTCTCCGCCTCTTACGGTATATTTATTTTGTCTAAGGC
GCGATGCCCCACGGTTCGGCGTGGCCCCACATAAAGACACCTCGATGTGT
AGACTAACGCCTGTGCGCACAATGTACGTCTACTGTACGGCATTCAGGAA
TGTGAAATTCAAGGACGAGGAGCTGACCCTGACATACCAGAAAGACGGCG
GCGACGACAGCAGCCAGTGCAAAGGCGTCCGCCAGCTTTCGGGAGGAGAG
CGCTCGTTCGCCACCCTCGCACTCCTGCTGGCTCTGAGGTCGTGCCACGA
TTGCCCATTCCGGTGCGTTCCACCAAACAAGCGGTATTCCAGCCAAGGTT
TGGTTTTTCTCTGTCTGTCTGCCTGTCCCTCAAGCGCTCCGTTTACTTTG
CTTTCAGACGGTTCACTGCGTCCGGGCGCCGAGGTGCTGTAAGTATCGCT
TGGTATTATACCCGTTGGTATCGGTTTGGAAGTGTTAGTGTTTGCGGTCA
CGCGCGATACGGATGTCGGATACCATTCGGAGCCGGAGGGCGGCAGCTGT
GGCTGGACGGTGTCGTTCTTGTTTGGCTTTAGTAGTGTGGTGTTTGGGGT
TTCTAAATTTCCCTTGGACGCTCTCACGCTGGCGTCACAAAAGCCGGGTT
TTTTTGCCCGTTCGTTTGACTGCAAAGGATGGAGCGTTGTGCTTGCCTTC
AATGTCGGGTGCTTTTCGCCTCTTTGTGCGTGAACAATCCTTGTGTCTTT
GATTCACTCCTTGCGCAGAATCAAAAAGTAGCACCTCCCTACATCGTGGC
AGTGCAGTGACAGAAGAAGTTCTATTGCGATTGCGTGTTTTTCTGGCCGT
CAGGGTGATGGACGAGTTCGACGTGTTCTTGGACGCCGTCAGTCGCGACG
TCGCTATCAAGCAGGTGCTGGAGTTCGCGGGAAGGGACAGCACGAGGCAG
TTCATCCTCATCACGCCGCAGGTGTGTCGCAGTGGTTGATGTTGCCTCAT
GTTGCCTTGGACAGTCACGTCTCTGTTCATCCCGTCTAATCCATACTCTT
GTTGGAATATGTTTCGAACCCGCCTTCGTATGCCAGAGGCCCTGTGGACT
GCAACGTGTAGTCAATTATCTGTTAACGGTTTTTTGTTCAATCCGAAACG
ATCTCAGACTTGCCGAGAAAAGACGGGAGTTCCTGTTGCTTTCCAGGGCT
TTTGTGCCATCCACGAGACACGAAAAGTTACACAAATCCCTCGTCGTTGG
CTTCTTCAAGCCGAGCTTTTTTTCGTGAATGTGACATCGGCTAGGACCAT
ATACAGACCATTCCCCAAGCCCTGAAACTGGGTTGATGCTTCGTCGCTTT
TCGTGTCATAACTCGTTCTTACCGCTGTCTAGGCTATTTGTTGTCATCGC
CGCGTCCTTCCCGCCTTCCCGCTCGAAAGCACCCGGCACAACGAATCTTC
TCCCGCCTCGCTTGCTTGTCTTCGCCATGATGCTATCCGTCTACTGAAAG
GCGTTCTGCTGTGCCGCCTCAGTCGGGGCTATTTGCGACCATCATCACCT
TGAGGCAATTCTTGCCACACACAACAACCGTCAGGACGAAACTTGCTCGT
GCCTCGCTCGCTTGTCTCCTTGTCTTGGCAGGACCTGTCGTCGGTGACCG
CGAGCGACACGTGCAAGATCATCAAGATGCAGCCCCCTCGCAAGGGGGAC
CACAACCAGACCACGCTGGAAGAAGCCTTCAGTGCCGGTGCCTCTTGACG
CTCTCTGCCCTAGGCTTCATTGGCTGGCATGAAACAAGGCAATAATTGTG
ATTGCGTCGTTCCAGGGTCGGGATAGCTGTTCCTGTTCCATGTCTTTAGT
CTCTTCGCGGGGGAACATTTTGGTCTGGACTGTACATTTCATCATTTTAT
GTTTGTGTTCAGGTGAGGTTGCCCCGCACCTTGTTGGAAGTGCCGCCAGC
TGTATAGAAAGCAGCGCGTACCAAGTTGGCCTGCGAGAGGCCGCGGGGTG
TTGTTGACGGGGGGACAGAAAGCCTCTGTTAGGTACTTCGAAGTACTAAA
TAATGCGGTGCCGGTTTGCCGGTGCCTTGTAGGCGTAGCCCCATGTATTA
CTTTGAGGATTTTCTGAGTCCATTTTTATTTTCTTTTGATTGTAGAGAAT
TTTTGACCCTTCTGGAGTAGTTGGGGTTAGACGACCGAAGGGACCCGAGT
CAGTTGGACTGTTACACCTTTGAGGTTATTAGAAGGTACAGAGTAGAGAC
CGGAACGGTGTTTCGATTTGAAGACAAGAACAACAACCACACCCTTCCCC
TTTTTTTCCGGAAGCATTTACAGTTGGTTATGCATTTCTTCGGCGGTCAT
GCCCTCATTTACGGTTCGTTCATTTAAGGGGTTAACTCGGTAGCGGCATT
TTAGGCGGACACGTTCAGCAGTAACGCCGTACGGCCGTATTGTTTTTGGC
GGTAGGCGGTGTTCCGTTCTTTGGCGGTAACGACTTTGGCGGAGGCCGTA
AAACCTAACGAAGTATGTCGGAAACGTTTCGGCGGTATTAGACTAGTCGG
TTTCCGTTTTTTGGCTGTATCAACTTTGGCGGAGGAGGTAAAACCAGACA
ATGGCCGCATTTTTTCGCCGGAACGCCATTCGGCGGTCATTGTTTTGGCG
ATACTGTAGGAGGCATGGGCGTTTGTTGGCTGTAATGAATATTTAGCGGA
GGCTGTACTACACAACATACGGCGGGAAGACGGCGGTATACCAGTACCGT
CCACCAGGGCGGTATTTTCACGGCCATCACGAACGCCGTGTGGCCGTAAA
TTCATGCGACACAAAACAAGGTGGC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:2030098..2036072+

>mRNA_E-siliculosus-1a_M_contig9.17097.1 ID=mRNA_E-siliculosus-1a_M_contig9.17097.1|Name=mRNA_E-siliculosus-1a_M_contig9.17097.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=984bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:2030098..2036072+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCCAGGGACCTCCAAGGGAAACTGAGTCCCAACCACTTCGGGACTAC
GGCGGTGACAAATGGTCGTAACACAGCTGCAGCAGTCGACCGATGCCCAG
GGACCTCCAAGGGAAACTGAGTCCCAACCACTTCGGGACTACGGCGGTGA
CAAATGGTCGTAACACAGCTGCAGCAGTCGACCGGAATGTGAAATTCAAG
GACGAGGAGCTGACCCTGACATACCAGAAAGACGGCGGCGACGACAGCAG
CCAGTGCAAAGGCGTCCGCCAGCTTTCGGGAGGAGAGCGCTCGTTCGCCA
CCCTCGCACTCCTGCTGGCTCTGAGGTCGTGCCACGATTGCCCATTCCGG
AATGTGAAATTCAAGGACGAGGAGCTGACCCTGACATACCAGAAAGACGG
CGGCGACGACAGCAGCCAGTGCAAAGGCGTCCGCCAGCTTTCGGGAGGAG
AGCGCTCGTTCGCCACCCTCGCACTCCTGCTGGCTCTGAGGTCGTGCCAC
GATTGCCCATTCCGGGTGATGGACGAGTTCGACGTGTTCTTGGACGCCGT
CAGTCGCGACGTCGCTATCAAGCAGGTGCTGGAGTTCGCGGGAAGGGACA
GCACGAGGCAGTTCATCCTCATCACGCCGCAGGGTGATGGACGAGTTCGA
CGTGTTCTTGGACGCCGTCAGTCGCGACGTCGCTATCAAGCAGGTGCTGG
AGTTCGCGGGAAGGGACAGCACGAGGCAGTTCATCCTCATCACGCCGCAG
GACCTGTCGTCGGTGACCGCGAGCGACACGTGCAAGATCATCAAGATGCA
GCCCCCTCGCAAGGGGGACCACAACCAGACCACGCTGGAAGAAGCCTTCA
GTGCCGGTGCCTCTTGAGACCTGTCGTCGGTGACCGCGAGCGACACGTGC
AAGATCATCAAGATGCAGCCCCCTCGCAAGGGGGACCACAACCAGACCAC
GCTGGAAGAAGCCTTCAGTGCCGGTGCCTCTTGA
back to top