mRNA_E-siliculosus-1a_M_contig9.17096.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.17096.1 vs. uniprot
Match: D7G4L9_ECTSI (Cellulosome anchoring protein, cohesin region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L9_ECTSI) HSP 1 Score: 657 bits (1695), Expect = 3.780e-192 Identity = 570/835 (68.26%), Postives = 585/835 (70.06%), Query Frame = 1
Query: 4879 AAPTSTTKPPVAAPTXXXXXXXXXXXXXPSMPSAXXXXXXXXXXXXXXXXXTSMSYDFDFDGPTPAPVMEGVQPVTTPGMPSPXXXXTXXXSPXXXXXXAETTTAPASSDRQRSPSSPSLSPXXXPVVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAPAGGKNQAPYPTDAPRTLXXXXXXXXXXXXXXXXXXXXXXXMXYXXXXXXXXXXXXXXXLQXXXXXXXXXXXXXXTPPSSRSPTAPVEETTTXXXVSSDRRQSPSSP----------SPSPVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDAXXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPPVPSPTMXXXXXXXXXXXXTAMSYDFNLDDTTPAPVSEGLQPSPTGAPRTDPAAVPTSTTEXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------EPISQPSERGAVAPTSVGTTPAPSTPGASWTQAPATAGAPPPASGDVFTCPPPVPCICEAPAAPPPTAAPTSEATSVTAAAGVXXXXAAMPTAAHPGTPTSNTPSPAHDGSLPMATPSXTPTPTPHNQTTPTMPGGSDSSTDEFEDDDDGLFYLPEDSDSMDGFQXXXXXXXXPDGEFDEPSATPAPRATPVPVAGRSQPHTPMPVVVADEDEEEVDCVSLLSPEMSTELAQKDKGVYYEKDCQGLHCNMFGIGWDCRACYMDCAACEGDQEDLGTADLAMCPSEFPRIGGQTQTCISACSAMRKTRYRRRRRRLRGQ 7284
AAPTSTTKPPVAAPTXXXXXXXXXXX PSMPS XXXXXXXXXXXXXXXXX MSYDF FDGPTPAPV+EGVQPV TPGMP XXXX XXX XXXXX AETTTAPASSDRQ+SP SPS SPXXX VV XXXXXXXXXXXXXXXXXXX XXX LAPAGG+NQAP PT P + M Y LQ T SRSPTAPVEETTT VSSD+RQS S +P+P++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ATPPVPSPTMXXXXXXXXXX TAMSYDF +DDTTPAPV EGLQPSPTGAPRTDPAA PTSTTE XXXXXXXXXXXXXXXXXXXXXXXX EPISQPSERGAVAPT+ GTTPAPSTPG SWTQAPATAGA PP SGDVFTCPPPVPCICEAPA P PTAAPTS+ATSV AAAGV AAMPTA+HPG PTSNTPSP HDGSLPMATPSX N T PTMPGGSDSSTDEFEDDDDGLFYLPED DS+DGFQXXXXXXXXPDGEFDEP ATPAPRATP PVAGRSQPHTPMP VVADE+ EEVDCVSLLSPEMSTELAQKDKGVYYEKDCQGLHCNMFGIGWDCRACYMDCAACEGDQEDLGTADLAMCPSEFPRIGGQTQTCIS CSA RKTRYRRR LRGQ
Sbjct: 1631 AAPTSTTKPPVAAPTXXXXXXXXXXXVAPSMPSXXXXXXXXXXXXXXXXXXXPMSYDFGFDGPTPAPVIEGVQPVATPGMPXXXXXXXXXXXXXXXXXAAETTTAPASSDRQQSPYSPSPSPXXXXVVAPXXXXXXXXXXXXXXXXXXXSHDXXXTATLAPAGGQNQAPSPTGVPPAMPSSPTS-----------------MSYDFGFDGPTPAPASEGLQPVATPGQPSPPTPSTXXXSRSPTAPVEETTTTAPVSSDKRQSSSXXXXXXXXXXVVAPAPISTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAP------------------------------------------------------------------------------------ATPPVPSPTMXXXXXXXXXXAPTAMSYDFKIDDTTPAPVYEGLQPSPTGAPRTDPAAAPTSTTESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALTSTPPTGAVQEPAATPEPISQPSERGAVAPTTAGTTPAPSTPGGSWTQAPATAGALPPVSGDVFTCPPPVPCICEAPAEPTPTAAPTSDATSVAAAAGVTTAPAAMPTASHPGMPTSNTPSPTHDGSLPMATPSXXXXXXXXNHTAPTMPGGSDSSTDEFEDDDDGLFYLPEDFDSIDGFQXXXXXXXXPDGEFDEPGATPAPRATPAPVAGRSQPHTPMPAVVADEEVEEVDCVSLLSPEMSTELAQKDKGVYYEKDCQGLHCNMFGIGWDCRACYMDCAACEGDQEDLGTADLAMCPSEFPRIGGQTQTCISTCSATRKTRYRRR---LRGQ 2361
BLAST of mRNA_E-siliculosus-1a_M_contig9.17096.1 vs. uniprot
Match: A0A6H5KK76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK76_9PHAE) HSP 1 Score: 569 bits (1467), Expect = 6.720e-161 Identity = 543/948 (57.28%), Postives = 563/948 (59.39%), Query Frame = 1
Query: 4471 VTEGLQPVATPGQSLPSAPSMPPSSRSPTAPVEETTTAPASSGRHQSPSPA-------VAPXXISTTPDASPSLXXXXXXSSPSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPTSTTKP---PVAAPTXXXXXXXXXXXXXPSMPSAXXXXXXXXXXXXXXXXXTSMSYDFDFDGPTPAPVMEGVQPVTTPGMPSPXXXXTXXXSPXXXXXXAETTTAPASSDRQR-------------------SPSSPSLSPXXXPVVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAPAGGKNQAPYPTDAPR---------TLXXXXXXXXXXXXXXXXXXXXXXXMXYXXXXXXXXXXXXXXXLQXXXXXXXXXXXXXXTPPSSRSPTAPVEETTTXXXVSSDRRQSPSSPSPSPVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDAXXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPPVPSPTMXXXXXXXXXXXXTAMSYDFNLDDTTPAPVSEGLQPSPTGAPRTDPAAVPTSTTEXXXXXXXXXXXXXXXXXXXXXXXXX--------------EPISQPSERGAVAPTSVGTTPAPSTPGASWTQAPATAGAPPPASGDVFTCPPPVPCICEAPAAPPPTAAPTSEATSVTAAAGVXXXXAAMPTAAHPGTPTSNTPSPAHDGSLPMATPSXTPTPTPHNQTTPTMPGGSDSSTDEFEDDDDGLFYLPEDSDSMDGFQXXXXXXXXPDGEFDEPSATPAPRATPVPVAGRSQPHTPMPVVVADEDEEEVDCVSLLSPEMSTELAQKDKGVYYEKDCQGLHCNMFGIGWDCRACYMDCAACEGDQEDLGT 7158
V EG+QP ATPG PS PS PPSSRSPTAP ETTTAP+SS R VAP IST P+ XXXXXX S + AP+ T P P AAPT XXXXXXXXX XXXXXXXXX T+MSY+FDFD TPAPV EG QPV TPG P PXXXX XXX XXXXX AETT APASSD Q+ + SLSP P + LAP+G KNQ P PT APR T+ XXXXX M Y XXX LQ TPPSSRSPTAPVEETTT VSSDR++SPSSPSPSPV A XXXXXXXXXXXXXXXXXX T A XXXXXXXXXXXXXXXXX ATPPVPSPT+XXXXXXXXXXXXTAMSYDFN DDTTPAPVSEGLQPSP GAPR DPAA PTSTTE XXXXXXXXXXXXXXXXXXXXXXXX EPISQPSERG+VAPTS GTTPAPSTPG SWTQ PA AGAPPPASGDVFTCPPPVPCICEAPA P PTAAPTSEATSVT AAGV AAMPTA+HPGTPTSNTPSP DGSLPMATP X H+QT PTMPGGSDSSTDEFEDDDDGLFYLPED DS+DGFQXXXXXX PDGEFDEP ATPAPRA P PVAGRSQP+TP P VVADEDEEEVDCVSLLSPEM ELAQKDKGVYYEKDCQGLHCNMFGIGWDCRACYMDCAACEGDQEDLGT
Sbjct: 2836 VMEGVQPDATPGMLSPSDPSTPPSSRSPTAPAVETTTAPSSSDRQXXXXXXXXXXXXMVAPAPISTAPEXXXXXXXXXXXXHDSSTAATLAPAGGKNQ----------------------------------------------APSPTDAPQTLPAAAPTPTSEXXXXXXXXXXXXXXXXXXXXXXXXSSTIPTAPTAMSYNFDFDELTPAPVSEGAQPVATPGQPLPXXXXXXXXXXXXXXXVAETTAAPASSDTQQXXXXXXXXXXXXXXXXXXSTAPDVSLSPAARPAPSHDPSPTAT---------------------LAPSGVKNQVPSPTSAPRADPAAAPTSTIELPAAAPAMPSVPSXXXXXAPTSMSYDFDFDGPTXXXASEGLQPVATPGQPSPPIPSTPPSSRSPTAPVEETTTTAPVSSDRQRSPSSPSPSPVVAPXXXXXXXXXXXXXXXXXXAP------------------TAAAATPTXXXXXXXXXXXXXXXXX---------------------------------------------------------ATPPVPSPTIXXXXXXXXXXXXTAMSYDFNFDDTTPAPVSEGLQPSPMGAPRADPAAAPTSTTEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGQEPAATPEPISQPSERGSVAPTSAGTTPAPSTPGGSWTQVPAAAGAPPPASGDVFTCPPPVPCICEAPAEPTPTAAPTSEATSVTVAAGVTTAPAAMPTASHPGTPTSNTPSPTQDGSLPMATPXXXXXXXXHSQTAPTMPGGSDSSTDEFEDDDDGLFYLPEDPDSIDGFQXXXXXXYFPDGEFDEPDATPAPRAIPAPVAGRSQPYTPTPAVVADEDEEEVDCVSLLSPEMLMELAQKDKGVYYEKDCQGLHCNMFGIGWDCRACYMDCAACEGDQEDLGT 3641
BLAST of mRNA_E-siliculosus-1a_M_contig9.17096.1 vs. uniprot
Match: A0A6H5KCS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCS6_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 5.570e-6 Identity = 30/41 (73.17%), Postives = 32/41 (78.05%), Query Frame = -1
Query: 4378 DRLEALGHRFRRWPVEVERQG--CRHRCPFRVARPGTAAVD 4494
DRL AL HR RRWPVEVE +G CRHRC FR +RPGT AVD
Sbjct: 168 DRLRALCHRSRRWPVEVEVEGQICRHRCSFRASRPGTIAVD 208 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig9.17096.1 >prot_E-siliculosus-1a_M_contig9.17096.1 ID=prot_E-siliculosus-1a_M_contig9.17096.1|Name=mRNA_E-siliculosus-1a_M_contig9.17096.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=2429bp MRGSRGTRLAWLALLAQKAHAAPSSSSVSVACSLESLSQDDRESMRQHRRback to top mRNA from alignment at E-siliculosus-1a_M_contig9:2010349..2025151- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig9.17096.1 ID=mRNA_E-siliculosus-1a_M_contig9.17096.1|Name=mRNA_E-siliculosus-1a_M_contig9.17096.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=14803bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:2010349..2025151- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:2010349..2025151- >mRNA_E-siliculosus-1a_M_contig9.17096.1 ID=mRNA_E-siliculosus-1a_M_contig9.17096.1|Name=mRNA_E-siliculosus-1a_M_contig9.17096.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=14574bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:2010349..2025151- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |