mRNA_E-siliculosus-1a_M_contig9.17093.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.17093.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.17093.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17093.1 vs. uniprot
Match: A0A6H5KN98_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN98_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 3.610e-40
Identity = 77/151 (50.99%), Postives = 100/151 (66.23%), Query Frame = 1 
Query:  163 ANRLHCKETRQRKRKQEQLLREEVSILELCKSIVEHGPDLFSIHGFHTTAPFRFLCEDFCDRLQMEPAEFLGRPLASIVDPQDADILENAVARVLDSACDNTGTTRTWTDSPDRAKGCLIDVRVTRRGLSCPAEMSISIGSHGLVVVTRLY 615
            ANR+HC+ETR+RKR+ E LL+EEV IL L K++VE GPDLFS H     APF F CE++  +LQ+ P + +G+PLASIVDP+DA IL  A+  VL          +T     +   G L+ +RV+   +SC A MS+ IGS GLVVVTRLY
Sbjct:   23 ANRIHCRETRERKRRAEALLKEEVEILSLYKALVEEGPDLFSCHRVEPDAPFSFACENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEALNEVL--------ANKTNIGDSEPGSGKLVKLRVSCGSISCSASMSMVIGSQGLVVVTRLY 165
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17093.1 vs. uniprot
Match: A0A6H5KRF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF4_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 2.840e-39
Identity = 76/155 (49.03%), Postives = 100/155 (64.52%), Query Frame = 1 
Query:  157 REANRLHCKETRQRKRKQEQLLREEVSILELCKSIVEHGPDLFSIHGFHTTAPFRFLCEDFCDRLQMEPAEFLGRPLASIVDPQDADILENAVARVLDSACDNTGTTRTWTDSPDRAKGCLIDVRVTRRGLSCPAEMSISIGSHGLVVVTRLYRS 621
            REANR+HCKETR R+R++E+ L E V +L+LC+SIVEHGPDLFS+H     APF +LC++F  RLQM P   +GR L SIVD ++A  L NA+ +VL+ A                    ++ VR+    + C A MSI+ GSHGL+VVTRLY S
Sbjct:   26 REANRIHCKETRDRRRERERALSEHVELLKLCQSIVEHGPDLFSLHNATIDAPFSYLCDNFTMRLQMPPEAMVGRSLLSIVDEREALSLRNAIFQVLNEAQHXXX----XXXXXXXXXXAVVHVRIAHGQIFCEASMSIACGSHGLIVVTRLYSS 176
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17093.1 vs. uniprot
Match: D7G4L6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L6_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 8.490e-17
Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:  355 MEPAEFLGRPLASIVDPQDADILENAVARVLDSACDNTGTTRT 483
            MEP EFLGRPLASIVDPQDADIL+NAVARVLDSACDN GTT T
Sbjct:    1 MEPVEFLGRPLASIVDPQDADILKNAVARVLDSACDNNGTTST 43
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17093.1 vs. uniprot
Match: D8LCA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCA0_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 6.910e-16
Identity = 49/153 (32.03%), Postives = 74/153 (48.37%), Query Frame = 1 
Query:  226 EEVSILELCKSIVEHGPDLFSIHGFHTTAPFRFLCEDFCDRLQMEPAEFLGRPLASIVDPQDADILENAVARVLDSACDNTGTTRTWTDSPDR------------------------AKGCLIDVRVTRRGLSCPAEMSISIGSHGLVVVTRL 612
            +E  +LE+ + IVE+GPDLFS+HG    APF F+ +    + Q+     LG+PL ++VDP D  +L  A+  VL     + G +    D                              G ++++ V   G SC A MSI++G  GL+VVTR+
Sbjct:    8 QEEDVLEVYRDIVENGPDLFSLHGTTLDAPFSFVSKSLNLKFQLPSEYLLGKPLKTVVDPDDWGVLTTALLAVLGPNPTSGGKSGNSRDGGXXXXXXXXXXXXXXXXXXXXXXXVAVGSGTVVELNVMCGGASCLASMSIALGCRGLIVVTRM 160
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KN98_9PHAE3.610e-4050.99PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KRF4_9PHAE2.840e-3949.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4L6_ECTSI8.490e-1790.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCA0_ECTSI6.910e-1632.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:1988057..1991545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size624
Model size624
Exons4
Ec32 orthologEc-07_000130.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.17093.1prot_E-siliculosus-1a_M_contig9.17093.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 1988057..1991545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936415.0953474-CDS-E-siliculosus-1a_M_contig9:1988056..19882841622936415.0953474-CDS-E-siliculosus-1a_M_contig9:1988056..1988284Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1988057..1988284 +
1696251067.6894825-CDS-E-siliculosus-1a_M_contig9:1988056..19882841696251067.6894825-CDS-E-siliculosus-1a_M_contig9:1988056..1988284Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1988057..1988284 +
1622936415.1133056-CDS-E-siliculosus-1a_M_contig9:1989125..19892171622936415.1133056-CDS-E-siliculosus-1a_M_contig9:1989125..1989217Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1989126..1989217 +
1696251067.70174-CDS-E-siliculosus-1a_M_contig9:1989125..19892171696251067.70174-CDS-E-siliculosus-1a_M_contig9:1989125..1989217Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1989126..1989217 +
1622936415.127631-CDS-E-siliculosus-1a_M_contig9:1989742..19899041622936415.127631-CDS-E-siliculosus-1a_M_contig9:1989742..1989904Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1989743..1989904 +
1696251067.712651-CDS-E-siliculosus-1a_M_contig9:1989742..19899041696251067.712651-CDS-E-siliculosus-1a_M_contig9:1989742..1989904Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1989743..1989904 +
1622936415.1455793-CDS-E-siliculosus-1a_M_contig9:1991403..19915451622936415.1455793-CDS-E-siliculosus-1a_M_contig9:1991403..1991545Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1991404..1991545 +
1696251067.7230184-CDS-E-siliculosus-1a_M_contig9:1991403..19915451696251067.7230184-CDS-E-siliculosus-1a_M_contig9:1991403..1991545Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1991404..1991545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.17093.1

>prot_E-siliculosus-1a_M_contig9.17093.1 ID=prot_E-siliculosus-1a_M_contig9.17093.1|Name=mRNA_E-siliculosus-1a_M_contig9.17093.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=208bp
MMSGEIGARVPSVNSVARASCNALADSSRSYSSNSSNSSSGGVTDDATRD
ALREANRLHCKETRQRKRKQEQLLREEVSILELCKSIVEHGPDLFSIHGF
HTTAPFRFLCEDFCDRLQMEPAEFLGRPLASIVDPQDADILENAVARVLD
SACDNTGTTRTWTDSPDRAKGCLIDVRVTRRGLSCPAEMSISIGSHGLVV
VTRLYRS*
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mRNA from alignment at E-siliculosus-1a_M_contig9:1988057..1991545+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.17093.1 ID=mRNA_E-siliculosus-1a_M_contig9.17093.1|Name=mRNA_E-siliculosus-1a_M_contig9.17093.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3489bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1988057..1991545+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGATGAGTGGAGAGATCGGAGCACGAGTTCCTTCCGTTAACTCGGTGGC
GAGAGCGTCGTGCAATGCTCTGGCCGACAGCAGCAGAAGCTACAGCAGCA
ACAGCAGCAACAGCAGCAGCGGTGGCGTCACTGATGATGCTACCCGCGAC
GCTTTGCGTGAGGCGAACCGCCTCCACTGCAAGGAAACGCGTCAGCGAAA
GAGAAAGCAGGAGCAACTTCTGCGCGAGGTACGTTGCAGTCTATCACGTG
CTTCGAAGTCCATAGCAAGATCAGCAAGATCAGTCAGCGGCGAACGATAA
GGCGTCGACAGGAACAACATCTCCTGTAAGGTGCATGGTTATGCATCGGC
GTTTTCGAACCCTATCCTGTACCTCCACACGCCCCGGAGCGGTACATGGC
ATCCTCCCAAGAATAGTATTGCTGCAATAGCATTGACTCAGATGATATGG
ATGTCTGAACACTCGGCTGGGAGCGATCTTTGGTGTCTTTGGCTAGGGTC
CATAACACAGTAATGTTCGCCCTTTTCTTGTTGCTGTCCTTTGCCGTCTA
CTGAAAGATTTCCACATTGGTATCTCTAGACTACTCAGTATCATCTGTAC
CTCAAGCCTCACATGGTGGCCAAGACTGTTTGGCGGAAATGATGTCAACA
AAATACCTGTGCATACACACATTGCAACATGTGCCAGAGGGCGTGATCGA
TCTCCCATAGCCCCCAACCCAGCAACTCGTCAACAACGTATGCCGGTTGA
ACCTCAACCGCTGCCAGAAATTCAGCTCCACGGATATTTTCCCCGCCATC
CCGACAATCTGTTGCAGGTTTGTGTATGTTGGCCCTCCCTTTCAGCAGCT
ACAATAGCCACGTAGAGCTCCAATTGCGCATTCGCCACCCCGACGCGAAA
ATAGATTCGATATACTGTAATTACATATGACTGCATTCCTGTACTGTAGA
CTACTGTAGGCCAGACTACAAGTAGCAAAATAGTCCGAAAAACCTCCGCT
TCCACGTTCTGAAAGCATCACAAAAACGCATCAGCAGTTATTTGCGCGCG
CTTTTTTTCATTTTGTCAGGAAGTGAGTATCCTGGAACTGTGCAAGTCCA
TCGTGGAACACGGACCGGACCTGTTCTCTATCCACGGCTTTCACACGACC
GCACCGTTCAGGTTGGTGTGTGTCCATTCAAACTCTACCACGCGTTGTTG
TGGCTGTCGCCTGCTGTTGCTGATCATTTAACCGAACGGGCCGGGAGATC
AGACTACAACTTGTGTGTCGAGCCTACCGCAGATCCTCCCAAGAACCAGC
TGAAGAGAGGTGATCCGTTCTTTCAAAATTTGTTTGTACACAACTTAAGA
CTACGCGTTCGAGTTATGCAGGCAAACGAGGTTCGAGGGGTACAGCAGTA
GTGCCAAGTGATCACAGCAGTTAGTTGCCGGACACATACCACCGCACGGG
TGCGGCACAGTTTTCTCCCGCTTGTACGAACGGGGAAAGCATGCAAGGCG
AACACCAAGACCACAACACCCTTCCGTGATCCTCTTCGAGTACCTTCATT
CAAGTAGTCGAGCCTCGATATGCATACAACATAGGGGATGCACGCGAACT
CCCTTCTCAATAGACTACGACGTTCGTTGTTGAAACTCAAAACATGTCAA
TGCTGTTCCCCATATTCATTTCCAACGACCGACCAGATTCCTGTGCGAGG
ACTTTTGCGACAGGCTGCAGATGGAACCGGCGGAGTTCCTCGGGAGACCG
TTGGCAAGTATTGTGGACCCACAAGATGCAGACATTCTGGAGAACGCCGT
GGCTCGAGTACTGGACTCGGCGTGCGACAACACTGGTACCACCAGAACGT
GAGATATTATTCTGCAAGTAGCATGGAAACAGGATTTCAGACGGACGCTC
GCACCTATTAAAGTATGTTGCAACGTGATGCAACCTCAGCAATGTCCATG
GCCGCTCTCATCGTATCGCTCGAGGAGTGGCCACGGCGAAGGAGCATGCG
CCTACATTGACACCCGATGGGGAGATATCTGCATGCGGCCATCCCAGCAG
CTTCTTTCAGAAACGTGTTGGCAGCGGCAGCGCCGCGTCTTTTGCCATTT
GCATAGACTTAAACGTGACCATTCGAGAGAAGCACAGCTCGGGCCCGATA
ATGTACGAATGTGATGCTCACTCGTTTCCGGATACGCTCAACAATGCATA
GAGCTGCCTGGGAATTAATGTTGCTCGTACCGGTGTCTTCAGGGTGCGTC
AGAGGAGCCAGGGCAAGCAAGCTCTTGAGGTAGAATATCAGATTCATTAG
GGGGGAATGGACACGTCGCCAAGTGGCGTAAACAGGACTGATTCCGAAAA
GTGACCCAAGACACTGCTGTGATTTTCTGTGCTTGGCCCCAATACCGTAC
TTTATATCCATGTTGCGCCCTGAACGGTCGGTGAGGCTTGCGTGTGTATG
AGAGGTCGGTGCTCGGTGCGTGGATAATGAGAAAGAGTTTTTTCACGGAA
GGTGTGCCTCAAGGTTATGCTCGTCTGGTTCAGGTGCAGTCTCTCCTGAC
GGGCCACAGAAGGAATTCAGTCAAGCCAGTCAAGCCCGTTCGAACTCAAG
GCGAACTCAACAAATATACCGTGCTAGTGTAGTGGTGCAAAGGCAGTTAA
TAATTTCCACTGCTGGAAGCTGTGTAAATGCTGTAGTTGCAGTAGTTTTG
TAGGAAGTGTTTTTTTCGCTCTGTTCGTGACTCTTCCAATCTACGCGGTT
TCACGCCATCTGATTTGTCATGCGTTGGTTCCTAGTCTTGACCCTCTCCC
CAGTTGCATTGATTGTTCATTGTGCATGAAATTGATTAATTTCCACTACA
TATATTCTGTTTTACTTTGTCTTTTGTTGTGTTTTTTTACTGGCACGTAC
CCCCGCCCCTTCCTTTGGCCGTCGACCTGCCTCCATGTAGTGGGAGGCTA
CCCCCCAGGCTGGTGGTGCGGCCGTTCCACTAATTATTTATTTTATTTTA
TTTGTTTCTGATTATTTTGTTTTCTTGTATTTTATCGCTCTGCTGACCCT
TGGGGTCCATTTTATTTGGTATACCTTTTCTAGGTACGTTAGCCTGTGAC
CACGGAAATTGGCCGAGTCAAGTGATGGATTAGTACGGAGAGATTGAGAC
AGAAGGAGGTACTGGATAGAGAGACCGGGATGGTTTTTAATGTGAAGACA
ACAACAACAACAACAACAACAGGCAGGCGTGGTCTGAACGCCCCCCCCGA
GGTGAAAATCAATGTTTCAAATACATACATGTGACTGCGTCCCTCCCACC
CGCCCCATGACTTGCTGCCTGGGACTGCATGCTGCATCCACTTCCAGCTG
GACCGACTCTCCTGACAGAGCGAAGGGGTGCCTCATCGACGTACGCGTGA
CGAGACGCGGGCTGTCGTGCCCGGCGGAAATGTCCATCTCGATCGGAAGC
CACGGTCTTGTCGTCGTCACTCGGCTGTATCGGTCATGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:1988057..1991545+

>mRNA_E-siliculosus-1a_M_contig9.17093.1 ID=mRNA_E-siliculosus-1a_M_contig9.17093.1|Name=mRNA_E-siliculosus-1a_M_contig9.17093.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1248bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1988057..1991545+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGATGAGTGGAGAGATCGGAGCACGAGTTCCTTCCGTTAACTCGGTGGC
GAGAGCGTCGTGCAATGCTCTGGCCGACAGCAGCAGAAGCTACAGCAGCA
ACAGCAGCAACAGCAGCAGCGGTGGCGTCACTGATGATGCTACCCGCGAC
GCTTTGCGTGAGGCGAACCGCCTCCACTGCAAGGAAACGCGTCAGCGAAA
GAGAAAGCAGGAGCAACTTCTGCGCGAGATGATGAGTGGAGAGATCGGAG
CACGAGTTCCTTCCGTTAACTCGGTGGCGAGAGCGTCGTGCAATGCTCTG
GCCGACAGCAGCAGAAGCTACAGCAGCAACAGCAGCAACAGCAGCAGCGG
TGGCGTCACTGATGATGCTACCCGCGACGCTTTGCGTGAGGCGAACCGCC
TCCACTGCAAGGAAACGCGTCAGCGAAAGAGAAAGCAGGAGCAACTTCTG
CGCGAGGAAGTGAGTATCCTGGAACTGTGCAAGTCCATCGTGGAACACGG
ACCGGACCTGTTCTCTATCCACGGCTTTCACACGACCGCACCGTTCAGGA
AGTGAGTATCCTGGAACTGTGCAAGTCCATCGTGGAACACGGACCGGACC
TGTTCTCTATCCACGGCTTTCACACGACCGCACCGTTCAGATTCCTGTGC
GAGGACTTTTGCGACAGGCTGCAGATGGAACCGGCGGAGTTCCTCGGGAG
ACCGTTGGCAAGTATTGTGGACCCACAAGATGCAGACATTCTGGAGAACG
CCGTGGCTCGAGTACTGGACTCGGCGTGCGACAACACTGGTACCACCAGA
ACATTCCTGTGCGAGGACTTTTGCGACAGGCTGCAGATGGAACCGGCGGA
GTTCCTCGGGAGACCGTTGGCAAGTATTGTGGACCCACAAGATGCAGACA
TTCTGGAGAACGCCGTGGCTCGAGTACTGGACTCGGCGTGCGACAACACT
GGTACCACCAGAACCTGGACCGACTCTCCTGACAGAGCGAAGGGGTGCCT
CATCGACGTACGCGTGACGAGACGCGGGCTGTCGTGCCCGGCGGAAATGT
CCATCTCGATCGGAAGCCACGGTCTTGTCGTCGTCACTCGGCTGTATCGG
TCATGACTGGACCGACTCTCCTGACAGAGCGAAGGGGTGCCTCATCGACG
TACGCGTGACGAGACGCGGGCTGTCGTGCCCGGCGGAAATGTCCATCTCG
ATCGGAAGCCACGGTCTTGTCGTCGTCACTCGGCTGTATCGGTCATGA
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