mRNA_E-siliculosus-1a_M_contig9.17091.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.17091.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.17091.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:1975320..1975814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size264
Model size432
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.17091.1prot_E-siliculosus-1a_M_contig9.17091.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 1975476..1975802 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936371.491433-UTR-E-siliculosus-1a_M_contig9:1975319..19754751622936371.491433-UTR-E-siliculosus-1a_M_contig9:1975319..1975475Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1975320..1975475 -
1696251047.572381-UTR-E-siliculosus-1a_M_contig9:1975319..19754751696251047.572381-UTR-E-siliculosus-1a_M_contig9:1975319..1975475Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1975320..1975475 -
1622936371.5350187-UTR-E-siliculosus-1a_M_contig9:1975802..19758141622936371.5350187-UTR-E-siliculosus-1a_M_contig9:1975802..1975814Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1975803..1975814 -
1696251047.613019-UTR-E-siliculosus-1a_M_contig9:1975802..19758141696251047.613019-UTR-E-siliculosus-1a_M_contig9:1975802..1975814Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1975803..1975814 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936371.5057535-CDS-E-siliculosus-1a_M_contig9:1975475..19755091622936371.5057535-CDS-E-siliculosus-1a_M_contig9:1975475..1975509Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1975476..1975509 -
1696251047.5890152-CDS-E-siliculosus-1a_M_contig9:1975475..19755091696251047.5890152-CDS-E-siliculosus-1a_M_contig9:1975475..1975509Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1975476..1975509 -
1622936371.5182784-CDS-E-siliculosus-1a_M_contig9:1975572..19758021622936371.5182784-CDS-E-siliculosus-1a_M_contig9:1975572..1975802Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1975573..1975802 -
1696251047.6027098-CDS-E-siliculosus-1a_M_contig9:1975572..19758021696251047.6027098-CDS-E-siliculosus-1a_M_contig9:1975572..1975802Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1975573..1975802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.17091.1

>prot_E-siliculosus-1a_M_contig9.17091.1 ID=prot_E-siliculosus-1a_M_contig9.17091.1|Name=mRNA_E-siliculosus-1a_M_contig9.17091.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=88bp
MCQTFRALHWCIADGRVETRLTPRPRHASAILTTLRAGSSSRLFSKHFSR
IVGDHSSAMQDLHQSVQQLMYPKHHQPSHFSALWDRL*
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mRNA from alignment at E-siliculosus-1a_M_contig9:1975320..1975814-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.17091.1 ID=mRNA_E-siliculosus-1a_M_contig9.17091.1|Name=mRNA_E-siliculosus-1a_M_contig9.17091.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=495bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1975320..1975814- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CCCCATCTTGTCATGTGTCAGACTTTCCGCGCATTACATTGGTGCATAGC
TGACGGTAGGGTTGAAACTCGCCTGACACCGCGACCAAGGCACGCAAGTG
CGATATTGACGACTTTGAGAGCAGGCAGCAGCAGTCGTTTGTTTTCCAAG
CATTTCTCGCGGATAGTTGGAGATCACTCGTCGGCCATGCAAGACCTGCA
CCAAAGCGTGCAGCAGCTGATGTACCCGAAACATCACCAACCGCTAGCAA
TGGTCAGGGGCCAAGTCTGTACGTTGTTGGCGTCAAGTCGATCATAACTA
CCAAGTTCACACTTTTCAGCTCTTTGGGACCGTCTGTAGTTAGGAAACGG
AACATGACGGGGAAGAGATTAGAGAGATTGCTCGATAAATATCACCACCA
CAGGAGCACACGAGAACCACCACTACCAGGATCACGACAGCGACAGCGTT
CCTCACCGTGCGTTCGAGCTTGTGCGTCCCGCAGCGGGTGGCACG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:1975320..1975814-

>mRNA_E-siliculosus-1a_M_contig9.17091.1 ID=mRNA_E-siliculosus-1a_M_contig9.17091.1|Name=mRNA_E-siliculosus-1a_M_contig9.17091.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=528bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1975320..1975814- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTGTCAGACTTTCCGCGCATTACATTGGTGCATAGCTGACGGTAGGGT
TGAAACTCGCCTGACACCGCGACCAAGGCACGCAAGTGCGATATTGACGA
CTTTGAGAGCAGGCAGCAGCAGTCGTTTGTTTTCCAAGCATTTCTCGCGG
ATAGTTGGAGATCACTCGTCGGCCATGCAAGACCTGCACCAAAGCGTGCA
GCAGCTGATGTACCCGAAACATCACCAACCATGTGTCAGACTTTCCGCGC
ATTACATTGGTGCATAGCTGACGGTAGGGTTGAAACTCGCCTGACACCGC
GACCAAGGCACGCAAGTGCGATATTGACGACTTTGAGAGCAGGCAGCAGC
AGTCGTTTGTTTTCCAAGCATTTCTCGCGGATAGTTGGAGATCACTCGTC
GGCCATGCAAGACCTGCACCAAAGCGTGCAGCAGCTGATGTACCCGAAAC
ATCACCAACCTTCACACTTTTCAGCTCTTTGGGACCGTCTGTAGTTCACA
CTTTTCAGCTCTTTGGGACCGTCTGTAG
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