mRNA_E-siliculosus-1a_M_contig9.17090.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.17090.1 vs. uniprot
Match: D7G4L4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L4_ECTSI) HSP 1 Score: 456 bits (1174), Expect = 1.660e-144 Identity = 348/513 (67.84%), Postives = 354/513 (69.01%), Query Frame = 1
Query: 43 MADAGTTTAELTAVAEELAKTSAKIESVEMALSGQGVYLGITDKDTLLSQLDVLQKKEAQLQTKELFIMAAVAGASASAVQAASMP-AFPPVGALPT-------DTSTEELTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAHRGPDSSSGEHGNATTGQDGHHVAGDSDFGGAEAAAXXXXXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXPAEVGGQEVVVPDGGACGNGVASGAPSPTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGDVQMAPVELALASPHQLLAQSPAPELSSPTLHVNGAPGATAELPPSLEAVGISPAQHVAAAAGGASSPAEGARGEEPALAGRGASLLGHHGVGIGADVGLAGGGQGQGGPVGCGGPLRSVKRRAGDGGAGIPQAAGSTKRRARASARCQYPGCMTARTFGRQGDRQASFCAVHKEEGMINIKGR 1557
MADAGTTTAELTAVAE+LAKTSAKIESVEMALSGQGVYLGITDKDTLLSQLDVLQKKEAQLQTKELFIMAAVAGASASAVQAAS+ AFPPVGALPT DTS EELTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IAH GPD+SSGEHG+ATTGQDGHHVA DSDFGGAE VGGQEVVVPDGG G VASGAPSPTV HGDVQ +ALASPHQLLAQSPAPELSSPTLHVNGAPGA AELPPSLEAVG+SPAQH AAAAGGASSPAEGARGEE ALAGRGA GGQG G VGCGGPLRSVKRRAGDGGAGI QAAGS KRRARASARCQYPGCMTARTFGRQGDRQASFCAVHKEEGMINIKGR
Sbjct: 1 MADAGTTTAELTAVAEDLAKTSAKIESVEMALSGQGVYLGITDKDTLLSQLDVLQKKEAQLQTKELFIMAAVAGASASAVQAASISVAFPPVGALPTGTAPASTDTSMEELTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------IAHGGPDNSSGEHGDATTGQDGHHVADDSDFGGAE-------------------------------------------------------VGGQEVVVPDGGDIG--VASGAPSPTVEAGAAQVAATLEGGGVTDVTEGVLNAGVTPAAGYVSGGGGDGGAVGVVHGDVQ-----IALASPHQLLAQSPAPELSSPTLHVNGAPGAAAELPPSLEAVGVSPAQHHAAAAGGASSPAEGARGEEYALAGRGAXXXXXXXXXXXXXXXXXXGGQG--GAVGCGGPLRSVKRRAGDGGAGISQAAGSNKRRARASARCQYPGCMTARTFGRQGDRQASFCAVHKEEGMINIKGR 440
BLAST of mRNA_E-siliculosus-1a_M_contig9.17090.1 vs. uniprot
Match: A0A6H5KKE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKE2_9PHAE) HSP 1 Score: 348 bits (892), Expect = 9.460e-105 Identity = 357/443 (80.59%), Postives = 364/443 (82.17%), Query Frame = 1
Query: 130 MALSGQGVYLGITDKDTLLSQLDVLQKKEAQLQTKELFIMAAVAGASASAVQAASMPAFPPVGALPT-------DTSTEELTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAHRGPDSSSGEHGNATTGQDGHHVAGDSDFGGAEAAAXXXXXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------PAEVGGQEVVVPDGGACGNGVASGAPSPTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGDVQMAPVELALASPHQLLAQSPAPELSSPTLHVNGAPGATAELPPSLEAVGISPAQHVAAAAGGASSPAEGARGEEPALAGRGASLLGHHGVGIGADVGLAGGGQGQGGPVGCGGPLRSVKRRAGDGGAG 1395
MALSGQGVYLGITDKDTLLSQLDVLQKKEAQLQTKELFIMAAV GASA AFP +GALPT DTSTEELTS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IAHRGPDSSSGEHG+ATTGQD HHVA DSDFGGAE A XXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXX XXX PAEVGGQEVVVPDGGA GNGVASGAPSPTV XXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX HGD+QMAPVELALASPHQLLAQSPAPELSSPTLHV APGA AE PPSLEAVG+SPAQH AAAA GASSPAE ARGEE ALAGRGA LLGHHG IGADVG+ GGQGQG PVGCGGPLRSVKRRAG+GG+G
Sbjct: 1 MALSGQGVYLGITDKDTLLSQLDVLQKKEAQLQTKELFIMAAVTGASAXXXXXXXXXAFPSMGALPTGTAPASTDTSTEELTSSFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------IAHRGPDSSSGEHGDATTGQDCHHVADDSDFGGAETAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPAPAPXXXVPXXXXXXXXXXXXPAEVGGQEVVVPDGGASGNGVASGAPSPTVEAXXXXXXXTLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVHGDLQMAPVELALASPHQLLAQSPAPELSSPTLHVGRAPGAAAEFPPSLEAVGVSPAQHHAAAAAGASSPAEWARGEESALAGRGAGLLGHHGGVIGADVGVVVGGQGQGDPVGCGGPLRSVKRRAGEGGSG 433
BLAST of mRNA_E-siliculosus-1a_M_contig9.17090.1 vs. uniprot
Match: A0A6H5KJ28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ28_9PHAE) HSP 1 Score: 124 bits (311), Expect = 3.950e-30 Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 1
Query: 3037 LALLCASSVGGNAIRTNRRGHIVLAAHLLELVVSSMCWLVRADRAVKVFDMFEPKRKAGDRWFHIWNFFL 3246
+ALLCASSVGG AI+TNRRGH VLAAHLLELVVSSMCWLVRADRAV VFD FEP+RKAGDRWFH NFFL
Sbjct: 1 MALLCASSVGGKAIKTNRRGHTVLAAHLLELVVSSMCWLVRADRAVNVFDTFEPQRKAGDRWFH--NFFL 68 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig9.17090.1 >prot_E-siliculosus-1a_M_contig9.17090.1 ID=prot_E-siliculosus-1a_M_contig9.17090.1|Name=mRNA_E-siliculosus-1a_M_contig9.17090.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=968bp MEVHQHPQQYYAGGMADAGTTTAELTAVAEELAKTSAKIESVEMALSGQGback to top mRNA from alignment at E-siliculosus-1a_M_contig9:1969973..1979216+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig9.17090.1 ID=mRNA_E-siliculosus-1a_M_contig9.17090.1|Name=mRNA_E-siliculosus-1a_M_contig9.17090.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=9244bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1969973..1979216+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:1969973..1979216+ >mRNA_E-siliculosus-1a_M_contig9.17090.1 ID=mRNA_E-siliculosus-1a_M_contig9.17090.1|Name=mRNA_E-siliculosus-1a_M_contig9.17090.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=5808bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1969973..1979216+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |