mRNA_E-siliculosus-1a_M_contig9.17087.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.17087.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE) HSP 1 Score: 550 bits (1418), Expect = 1.170e-191 Identity = 265/275 (96.36%), Postives = 270/275 (98.18%), Query Frame = 1
Query: 202 MISSVAFLTALAGMLGNTITRTEALSVLTPAVAESVASGRPYIVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQEDQSSQVTFPEPVAGHSNNGYRVRISEVGTDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYMIRVGLFGDDSIYACSPSFEITTTNPGVSAAGGGLWMDSATS 1026
M+SSVAFLTALAG+LGNTIT TEAL VLTPAVAESVASGRPY+VSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQ+DQSSQVTFPEPVAGHSNNGYRVRISEVGTDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMY IRVGLFGDDSIYACSPSFEITTTNPGV AAGGGLWMDS +S
Sbjct: 1 MVSSVAFLTALAGVLGNTITSTEALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVGTDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTTNPGVLAAGGGLWMDSTSS 275
BLAST of mRNA_E-siliculosus-1a_M_contig9.17087.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI) HSP 1 Score: 417 bits (1071), Expect = 5.280e-139 Identity = 207/280 (73.93%), Postives = 235/280 (83.93%), Query Frame = 1
Query: 202 MISSVAFLTALAGMLGNT-ITRTEALSVLTPAVAESVASGRPYIVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDA-CMIQEDQSSQVTFPEPVAGHSNNGYRVRISEVGTDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKA---EGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYMIRVGLFGDDSIYACSPSFEITTTNPGVSAAGGGLWMDSATS 1026
M SSVA L ALAG+LG+T IT TEAL VLTPAVAE+V SGRPYIVSW GA ADDRFE+DLHYCGSYS+CF EAE CGFW+ANVC E D + CM Q DQSSQVTFPEP+ G SN GYR+RI+EVG+D +RCS+DFYL++SAD GE GGPT+EVVAP A+ALA+AGE YTVEFDYDNGFGEQLGRFKIDLYKA +G GDCG+WVTSVCDKPD+GC DS+GDY+VVIP DSE+GMY IRVGLFGDD+IYACSPSFE+ + A G LW+DSATS
Sbjct: 1 MSSSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAE-CGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGSDTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAAAADAAGAAG-LWVDSATS 278
BLAST of mRNA_E-siliculosus-1a_M_contig9.17087.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI) HSP 1 Score: 395 bits (1016), Expect = 3.610e-131 Identity = 187/261 (71.65%), Postives = 213/261 (81.61%), Query Frame = 1
Query: 202 MISSVAFLTALAGMLGNTITRTEALSVLTPAVAESVASGRPYIVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQEDQSSQVTFPEPVAGHSNNGYRVRISEVGTDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYMIRVGLFGDDSIYACSPSFEITTTNPGV 984
M SSVAF+ AL GMLGN IT TEAL VLTPAVAE+V S PYIVSW+GA DDRFE+DLHYCGSYSFCF EA++CGFW+ N+C E DDACM Q+D SQVT PEPV GHSN+GYRVRI +VGT+ FRCS++FYL++SAD + GPTMEVVAP + ALAVAG YTVEFDYDNGFG Q GRFKIDLY AEG GDCG WV+SVCDKPD+GC D+EGDYD+VIP DSE GMY IRVGLFGDDS++ACS SFE+ G+
Sbjct: 1 MKSSVAFIAALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVGTETFRCSDEFYLMSSADA---SDQDGPTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVPETQGL 258
BLAST of mRNA_E-siliculosus-1a_M_contig9.17087.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 237 bits (605), Expect = 1.090e-69 Identity = 114/232 (49.14%), Postives = 156/232 (67.24%), Query Frame = 1
Query: 271 ALSVLTPAVAESVASGRPYIVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQEDQSSQVTFPEPVAGHSNNGYRVRISEVGTDNFR-CSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYMIRVGLFGDDSIYACSPSFEI 963
AL V+TPA + V + R Y V W G +++R+E+DL+YCGS C ++CG W+ +C +D C E + PEP++G S +GY+VR+++V D+ CS++FYL+A A+ G+ GGP + V +P + A AGE YTVEFDYDNG G +GRF IDLY A G+GDCG+++ ++CDKP +GC+DS GDYDV IP D+E GMY IRVG F DDS+Y CS FEI
Sbjct: 7 ALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGS--MCM--EDECGDWVTALCPYGEDGCPDNEGDYD-IVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEI 233
BLAST of mRNA_E-siliculosus-1a_M_contig9.17087.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 232 bits (592), Expect = 6.760e-68 Identity = 115/254 (45.28%), Postives = 160/254 (62.99%), Query Frame = 1
Query: 205 ISSVAFLTALAGMLGNTITRTEALSVLTPAVAESVASGRPYIVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQEDQSSQVTFPEPVAGHSNNGYRVRISEV-GTDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYMIRVGLFGDDSIYACSPSFEI 963
++ F+ GMLG AL V TP+ +V + R Y V W G +D+RFE+DL+YCGS C +DCG W+ +C +D C E + PEP+ G S +GY+VR+ ++ ++ CS++FYL+AS++ G+ GPT+EV +P + LA YTVEFDYDNG G + RF IDLY+A+G GDCG++V S+CDKP +GC+DS GDYDV IP D++ G Y IRV F DDS+Y+CS +F I
Sbjct: 1 MTRTGFVALACGMLG----AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCM--EDDCGDWVTALCPYGEDGCPDNEGDYD-IVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI 245
BLAST of mRNA_E-siliculosus-1a_M_contig9.17087.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 224 bits (571), Expect = 5.570e-65 Identity = 116/254 (45.67%), Postives = 158/254 (62.20%), Query Frame = 1
Query: 205 ISSVAFLTALAGMLGNTITRTEALSVLTPAVAESVASGRPYIVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQEDQSSQVTFPEPVAGHSNNGYRVRISEVGT-DNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYMIRVGLFGDDSIYACSPSFEI 963
++ F+ MLG AL V+TP+ V + R Y V W GA + RFE+DL++CGS C ++ CG W+ +C ++ C E + PEP++G SN+GY+VR+ +V D+ CS+ FYL+AS D + G G + V +P A AGE YTVEFDYDNG G ++ RF IDLY A+G+GDCG++VTS+CDKP +GC+DS GDYDV IPAD+E G Y IRVG F D+ +Y CS +F I
Sbjct: 1 MARTGFVALACAMLG----AANALEVVTPSADLIVVADRTYTVEWTGADSG-RFEIDLYHCGS--MCMEDS--CGDWVTALCPYGEEGCPDNEGDYD-IVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTI 244
BLAST of mRNA_E-siliculosus-1a_M_contig9.17087.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 213 bits (543), Expect = 5.820e-61 Identity = 111/254 (43.70%), Postives = 157/254 (61.81%), Query Frame = 1
Query: 205 ISSVAFLTALAGMLGNTITRTEALSVLTPAVAESVASGRPYIVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQEDQSSQVTFPEPVAGHSNNGYRVRISEVGTDN-FRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYMIRVGLFGDDSIYACSPSFEI 963
++ AF GMLG AL V++PA + V + Y V W GA + R+++DL+YCGS ++CG W+ +C DD C + V PEP+ G S +GY+V +++ ++ + CS DF L+AS + + + G + V +P A+AG YTVEFDYDNG G + RF IDLY + G+GDCG++VT++CDKP +GC+DS+GDYDVVIP+ +E GMY IRVG+F DD +Y CS SFEI
Sbjct: 1 MARTAFAALAFGMLG----AANALEVVSPAAGDMVVADSAYTVEWTGATSG-RYDIDLYYCGSVCM----EDECGDWVTALCPYGDDGCPDTQGDYD-VVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEI 242
BLAST of mRNA_E-siliculosus-1a_M_contig9.17087.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 203 bits (517), Expect = 3.600e-57 Identity = 114/263 (43.35%), Postives = 155/263 (58.94%), Query Frame = 1
Query: 205 ISSVAFLTALAGMLGNTITRTEALSVLTPAVAESVASGRPYIVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQEDQSSQVTFPEPVAGHSNNGYRVRISEVGTDN-FRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYK-AEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYMIRVGLFGDDSIYACSPSFEITTTNPGVS 987
++ AF GMLG AL V++PA SV + R Y V W G +D RFE+DL+YCGS FC ++CG W+ +C D C + + PEP+AG S +GY+V +++ ++ CS DF LVAS D GE G ++ V +P A+AG YTVE+DY+NG G RF IDLY G GDCG++V ++CDKP +GC DS+GDYDV IP+D+ GMY +RVG+F DD ++ CS FEI +S
Sbjct: 1 MARTAFAALAFGMLG----AANALEVVSPAAGISVIADRTYTVEWTGT-SDSRFEIDLYYCGS--FCM--EDECGDWVTALCPYGADGCPDTQGDYD-IVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGY-SLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVNDRTDMS 251
BLAST of mRNA_E-siliculosus-1a_M_contig9.17087.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 203 bits (516), Expect = 5.020e-57 Identity = 108/251 (43.03%), Postives = 152/251 (60.56%), Query Frame = 1
Query: 226 TALAGMLGNTITRTEALSVLTPAVAESVASGRPYIVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQEDQSSQVTFPEPVAGHSNNGYRVRISEVGTDN-FRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYMIRVGLFGDDSIYACSPSFEITTTN 975
TA A + ++ AL V++P SV + R Y V W G RFE+DL+YC S FC + CG W+ +C D C + PEP++G S +GY+V + ++ CS+DF L+AS D E GE G ++ V +P A+AGE YTVE+DY+NGFG RF +DLY G GDCG++VT++CD+P +GC DS+GDYDV IP+D+ GMY IRVG+F D+ +Y CS +FE+ T++
Sbjct: 4 TAFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTTG-RFEIDLYYCNS--FCMDDV--CGDWVTALCPYGADGCPDSAGDYD-IIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGY-SLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSD 246
BLAST of mRNA_E-siliculosus-1a_M_contig9.17087.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 192 bits (487), Expect = 5.380e-53 Identity = 94/217 (43.32%), Postives = 137/217 (63.13%), Query Frame = 1
Query: 202 MISSVAFLTALAGMLGNTITRTEALSVLTPAVAESVASGRPYIVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQEDQSSQVTFPEPVAGHSNNGYRVRISEV-GTDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDS 849
M++ F+ GMLG AL V TP+ +V + R Y V W G +D+RFE+DL+YCGS C +DCG W+ +C +D C E + PEP++G S +GY+VR+ ++ ++ CS++FYL+AS++ G+ GPT+EV +P + LA YTVEFDYDNG G ++ RF IDLY+A+G+GDCG++V S+CDKP +GC+DS
Sbjct: 1 MMARTGFVALACGMLG----AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCM--EDDCGDWVTALCPYGEDGCPDNEGDYD-IVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig9.17087.1 >prot_E-siliculosus-1a_M_contig9.17087.1 ID=prot_E-siliculosus-1a_M_contig9.17087.1|Name=mRNA_E-siliculosus-1a_M_contig9.17087.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=277bp MISSVAFLTALAGMLGNTITRTEALSVLTPAVAESVASGRPYIVSWQGAQback to top mRNA from alignment at E-siliculosus-1a_M_contig9:1950137..1953549- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig9.17087.1 ID=mRNA_E-siliculosus-1a_M_contig9.17087.1|Name=mRNA_E-siliculosus-1a_M_contig9.17087.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3413bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1950137..1953549- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:1950137..1953549- >mRNA_E-siliculosus-1a_M_contig9.17087.1 ID=mRNA_E-siliculosus-1a_M_contig9.17087.1|Name=mRNA_E-siliculosus-1a_M_contig9.17087.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1662bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1950137..1953549- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |