mRNA_E-siliculosus-1a_M_contig9.17087.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.17087.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.17087.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.17087.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE)

HSP 1 Score: 550 bits (1418), Expect = 1.170e-191
Identity = 265/275 (96.36%), Postives = 270/275 (98.18%), Query Frame = 1
Query:  202 MISSVAFLTALAGMLGNTITRTEALSVLTPAVAESVASGRPYIVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQEDQSSQVTFPEPVAGHSNNGYRVRISEVGTDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYMIRVGLFGDDSIYACSPSFEITTTNPGVSAAGGGLWMDSATS 1026
            M+SSVAFLTALAG+LGNTIT TEAL VLTPAVAESVASGRPY+VSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQ+DQSSQVTFPEPVAGHSNNGYRVRISEVGTDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMY IRVGLFGDDSIYACSPSFEITTTNPGV AAGGGLWMDS +S
Sbjct:    1 MVSSVAFLTALAGVLGNTITSTEALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVGTDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTTNPGVLAAGGGLWMDSTSS 275          
BLAST of mRNA_E-siliculosus-1a_M_contig9.17087.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI)

HSP 1 Score: 417 bits (1071), Expect = 5.280e-139
Identity = 207/280 (73.93%), Postives = 235/280 (83.93%), Query Frame = 1
Query:  202 MISSVAFLTALAGMLGNT-ITRTEALSVLTPAVAESVASGRPYIVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDA-CMIQEDQSSQVTFPEPVAGHSNNGYRVRISEVGTDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKA---EGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYMIRVGLFGDDSIYACSPSFEITTTNPGVSAAGGGLWMDSATS 1026
            M SSVA L ALAG+LG+T IT TEAL VLTPAVAE+V SGRPYIVSW GA ADDRFE+DLHYCGSYS+CF EAE CGFW+ANVC E D + CM Q DQSSQVTFPEP+ G SN GYR+RI+EVG+D +RCS+DFYL++SAD    GE GGPT+EVVAP A+ALA+AGE YTVEFDYDNGFGEQLGRFKIDLYKA   +G GDCG+WVTSVCDKPD+GC DS+GDY+VVIP DSE+GMY IRVGLFGDD+IYACSPSFE+       + A G LW+DSATS
Sbjct:    1 MSSSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAE-CGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGSDTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAAAADAAGAAG-LWVDSATS 278          
BLAST of mRNA_E-siliculosus-1a_M_contig9.17087.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI)

HSP 1 Score: 395 bits (1016), Expect = 3.610e-131
Identity = 187/261 (71.65%), Postives = 213/261 (81.61%), Query Frame = 1
Query:  202 MISSVAFLTALAGMLGNTITRTEALSVLTPAVAESVASGRPYIVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQEDQSSQVTFPEPVAGHSNNGYRVRISEVGTDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYMIRVGLFGDDSIYACSPSFEITTTNPGV 984
            M SSVAF+ AL GMLGN IT TEAL VLTPAVAE+V S  PYIVSW+GA  DDRFE+DLHYCGSYSFCF EA++CGFW+ N+C E DDACM Q+D  SQVT PEPV GHSN+GYRVRI +VGT+ FRCS++FYL++SAD     +  GPTMEVVAP + ALAVAG  YTVEFDYDNGFG Q GRFKIDLY AEG GDCG WV+SVCDKPD+GC D+EGDYD+VIP DSE GMY IRVGLFGDDS++ACS SFE+     G+
Sbjct:    1 MKSSVAFIAALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVGTETFRCSDEFYLMSSADA---SDQDGPTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVPETQGL 258          
BLAST of mRNA_E-siliculosus-1a_M_contig9.17087.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 1.090e-69
Identity = 114/232 (49.14%), Postives = 156/232 (67.24%), Query Frame = 1
Query:  271 ALSVLTPAVAESVASGRPYIVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQEDQSSQVTFPEPVAGHSNNGYRVRISEVGTDNFR-CSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYMIRVGLFGDDSIYACSPSFEI 963
            AL V+TPA  + V + R Y V W G  +++R+E+DL+YCGS   C    ++CG W+  +C   +D C   E     +  PEP++G S +GY+VR+++V  D+   CS++FYL+A A+    G+ GGP + V +P +   A AGE YTVEFDYDNG G  +GRF IDLY A G+GDCG+++ ++CDKP +GC+DS GDYDV IP D+E GMY IRVG F DDS+Y CS  FEI
Sbjct:    7 ALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGS--MCM--EDECGDWVTALCPYGEDGCPDNEGDYD-IVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEI 233          
BLAST of mRNA_E-siliculosus-1a_M_contig9.17087.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 6.760e-68
Identity = 115/254 (45.28%), Postives = 160/254 (62.99%), Query Frame = 1
Query:  205 ISSVAFLTALAGMLGNTITRTEALSVLTPAVAESVASGRPYIVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQEDQSSQVTFPEPVAGHSNNGYRVRISEV-GTDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYMIRVGLFGDDSIYACSPSFEI 963
            ++   F+    GMLG       AL V TP+   +V + R Y V W G  +D+RFE+DL+YCGS   C    +DCG W+  +C   +D C   E     +  PEP+ G S +GY+VR+ ++   ++  CS++FYL+AS++    G+  GPT+EV +P +  LA     YTVEFDYDNG G  + RF IDLY+A+G GDCG++V S+CDKP +GC+DS GDYDV IP D++ G Y IRV  F DDS+Y+CS +F I
Sbjct:    1 MTRTGFVALACGMLG----AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCM--EDDCGDWVTALCPYGEDGCPDNEGDYD-IVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI 245          
BLAST of mRNA_E-siliculosus-1a_M_contig9.17087.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 5.570e-65
Identity = 116/254 (45.67%), Postives = 158/254 (62.20%), Query Frame = 1
Query:  205 ISSVAFLTALAGMLGNTITRTEALSVLTPAVAESVASGRPYIVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQEDQSSQVTFPEPVAGHSNNGYRVRISEVGT-DNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYMIRVGLFGDDSIYACSPSFEI 963
            ++   F+     MLG       AL V+TP+    V + R Y V W GA +  RFE+DL++CGS   C  ++  CG W+  +C   ++ C   E     +  PEP++G SN+GY+VR+ +V   D+  CS+ FYL+AS D  + G   G  + V +P     A AGE YTVEFDYDNG G ++ RF IDLY A+G+GDCG++VTS+CDKP +GC+DS GDYDV IPAD+E G Y IRVG F D+ +Y CS +F I
Sbjct:    1 MARTGFVALACAMLG----AANALEVVTPSADLIVVADRTYTVEWTGADSG-RFEIDLYHCGS--MCMEDS--CGDWVTALCPYGEEGCPDNEGDYD-IVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTI 244          
BLAST of mRNA_E-siliculosus-1a_M_contig9.17087.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 5.820e-61
Identity = 111/254 (43.70%), Postives = 157/254 (61.81%), Query Frame = 1
Query:  205 ISSVAFLTALAGMLGNTITRTEALSVLTPAVAESVASGRPYIVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQEDQSSQVTFPEPVAGHSNNGYRVRISEVGTDN-FRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYMIRVGLFGDDSIYACSPSFEI 963
            ++  AF     GMLG       AL V++PA  + V +   Y V W GA +  R+++DL+YCGS        ++CG W+  +C   DD C   +     V  PEP+ G S +GY+V +++   ++ + CS DF L+AS +  +  + G   + V +P     A+AG  YTVEFDYDNG G  + RF IDLY + G+GDCG++VT++CDKP +GC+DS+GDYDVVIP+ +E GMY IRVG+F DD +Y CS SFEI
Sbjct:    1 MARTAFAALAFGMLG----AANALEVVSPAAGDMVVADSAYTVEWTGATSG-RYDIDLYYCGSVCM----EDECGDWVTALCPYGDDGCPDTQGDYD-VVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEI 242          
BLAST of mRNA_E-siliculosus-1a_M_contig9.17087.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 3.600e-57
Identity = 114/263 (43.35%), Postives = 155/263 (58.94%), Query Frame = 1
Query:  205 ISSVAFLTALAGMLGNTITRTEALSVLTPAVAESVASGRPYIVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQEDQSSQVTFPEPVAGHSNNGYRVRISEVGTDN-FRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYK-AEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYMIRVGLFGDDSIYACSPSFEITTTNPGVS 987
            ++  AF     GMLG       AL V++PA   SV + R Y V W G  +D RFE+DL+YCGS  FC    ++CG W+  +C    D C   +     +  PEP+AG S +GY+V +++   ++   CS DF LVAS D    GE G  ++ V +P     A+AG  YTVE+DY+NG G    RF IDLY    G GDCG++V ++CDKP +GC DS+GDYDV IP+D+  GMY +RVG+F DD ++ CS  FEI      +S
Sbjct:    1 MARTAFAALAFGMLG----AANALEVVSPAAGISVIADRTYTVEWTGT-SDSRFEIDLYYCGS--FCM--EDECGDWVTALCPYGADGCPDTQGDYD-IVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGY-SLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVNDRTDMS 251          
BLAST of mRNA_E-siliculosus-1a_M_contig9.17087.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 5.020e-57
Identity = 108/251 (43.03%), Postives = 152/251 (60.56%), Query Frame = 1
Query:  226 TALAGMLGNTITRTEALSVLTPAVAESVASGRPYIVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQEDQSSQVTFPEPVAGHSNNGYRVRISEVGTDN-FRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYMIRVGLFGDDSIYACSPSFEITTTN 975
            TA A +    ++   AL V++P    SV + R Y V W G     RFE+DL+YC S  FC  +   CG W+  +C    D C         +  PEP++G S +GY+V +     ++   CS+DF L+AS D  E GE G  ++ V +P     A+AGE YTVE+DY+NGFG    RF +DLY   G GDCG++VT++CD+P +GC DS+GDYDV IP+D+  GMY IRVG+F D+ +Y CS +FE+ T++
Sbjct:    4 TAFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTTG-RFEIDLYYCNS--FCMDDV--CGDWVTALCPYGADGCPDSAGDYD-IIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGY-SLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSD 246          
BLAST of mRNA_E-siliculosus-1a_M_contig9.17087.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 5.380e-53
Identity = 94/217 (43.32%), Postives = 137/217 (63.13%), Query Frame = 1
Query:  202 MISSVAFLTALAGMLGNTITRTEALSVLTPAVAESVASGRPYIVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQEDQSSQVTFPEPVAGHSNNGYRVRISEV-GTDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDS 849
            M++   F+    GMLG       AL V TP+   +V + R Y V W G  +D+RFE+DL+YCGS   C    +DCG W+  +C   +D C   E     +  PEP++G S +GY+VR+ ++   ++  CS++FYL+AS++    G+  GPT+EV +P +  LA     YTVEFDYDNG G ++ RF IDLY+A+G+GDCG++V S+CDKP +GC+DS
Sbjct:    1 MMARTGFVALACGMLG----AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCM--EDDCGDWVTALCPYGEDGCPDNEGDYD-IVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KPZ5_9PHAE1.170e-19196.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LEQ9_ECTSI5.280e-13973.93EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE... [more]
D7FN59_ECTSI3.610e-13171.65EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LI46_ECTSI1.090e-6949.14EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JRG9_9PHAE6.760e-6845.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYL2_ECTSI5.570e-6545.67EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D7G3E8_ECTSI5.820e-6143.70Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
D7G3F0_ECTSI3.600e-5743.35EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JY62_9PHAE5.020e-5743.03GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
D7FH21_ECTSI5.380e-5343.32Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:1950137..1953549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size831
Model size2009
Exons6
Ec32 orthologEc-07_000190.1
Ec32 ortholog descriptionSecreted protein similar to EsV-1-163
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.17087.1prot_E-siliculosus-1a_M_contig9.17087.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 1951155..1953348 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936413.6371973-UTR-E-siliculosus-1a_M_contig9:1950136..19506701622936413.6371973-UTR-E-siliculosus-1a_M_contig9:1950136..1950670Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1950137..1950670 -
1696251067.0978398-UTR-E-siliculosus-1a_M_contig9:1950136..19506701696251067.0978398-UTR-E-siliculosus-1a_M_contig9:1950136..1950670Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1950137..1950670 -
1622936413.6564298-UTR-E-siliculosus-1a_M_contig9:1950711..19511541622936413.6564298-UTR-E-siliculosus-1a_M_contig9:1950711..1951154Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1950712..1951154 -
1696251067.112486-UTR-E-siliculosus-1a_M_contig9:1950711..19511541696251067.112486-UTR-E-siliculosus-1a_M_contig9:1950711..1951154Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1950712..1951154 -
1622936413.8680816-UTR-E-siliculosus-1a_M_contig9:1953348..19535491622936413.8680816-UTR-E-siliculosus-1a_M_contig9:1953348..1953549Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1953349..1953549 -
1696251067.1764886-UTR-E-siliculosus-1a_M_contig9:1953348..19535491696251067.1764886-UTR-E-siliculosus-1a_M_contig9:1953348..1953549Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1953349..1953549 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936413.6865935-CDS-E-siliculosus-1a_M_contig9:1951154..19513361622936413.6865935-CDS-E-siliculosus-1a_M_contig9:1951154..1951336Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1951155..1951336 -
1696251067.1240673-CDS-E-siliculosus-1a_M_contig9:1951154..19513361696251067.1240673-CDS-E-siliculosus-1a_M_contig9:1951154..1951336Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1951155..1951336 -
1622936413.7882571-CDS-E-siliculosus-1a_M_contig9:1951604..19517401622936413.7882571-CDS-E-siliculosus-1a_M_contig9:1951604..1951740Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1951605..1951740 -
1696251067.1351714-CDS-E-siliculosus-1a_M_contig9:1951604..19517401696251067.1351714-CDS-E-siliculosus-1a_M_contig9:1951604..1951740Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1951605..1951740 -
1622936413.8079875-CDS-E-siliculosus-1a_M_contig9:1951960..19522601622936413.8079875-CDS-E-siliculosus-1a_M_contig9:1951960..1952260Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1951961..1952260 -
1696251067.1460586-CDS-E-siliculosus-1a_M_contig9:1951960..19522601696251067.1460586-CDS-E-siliculosus-1a_M_contig9:1951960..1952260Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1951961..1952260 -
1622936413.82444-CDS-E-siliculosus-1a_M_contig9:1952756..19528501622936413.82444-CDS-E-siliculosus-1a_M_contig9:1952756..1952850Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1952757..1952850 -
1696251067.1559825-CDS-E-siliculosus-1a_M_contig9:1952756..19528501696251067.1559825-CDS-E-siliculosus-1a_M_contig9:1952756..1952850Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1952757..1952850 -
1622936413.8440287-CDS-E-siliculosus-1a_M_contig9:1953229..19533481622936413.8440287-CDS-E-siliculosus-1a_M_contig9:1953229..1953348Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1953230..1953348 -
1696251067.1660485-CDS-E-siliculosus-1a_M_contig9:1953229..19533481696251067.1660485-CDS-E-siliculosus-1a_M_contig9:1953229..1953348Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1953230..1953348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.17087.1

>prot_E-siliculosus-1a_M_contig9.17087.1 ID=prot_E-siliculosus-1a_M_contig9.17087.1|Name=mRNA_E-siliculosus-1a_M_contig9.17087.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=277bp
MISSVAFLTALAGMLGNTITRTEALSVLTPAVAESVASGRPYIVSWQGAQ
ADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQEDQSSQV
TFPEPVAGHSNNGYRVRISEVGTDNFRCSEDFYLVASADVLEFGEPGGPT
MEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGS
WVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYMIRVGLFGDDSIYACSP
SFEITTTNPGVSAAGGGLWMDSATSS*
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mRNA from alignment at E-siliculosus-1a_M_contig9:1950137..1953549-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.17087.1 ID=mRNA_E-siliculosus-1a_M_contig9.17087.1|Name=mRNA_E-siliculosus-1a_M_contig9.17087.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3413bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1950137..1953549- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGCCGCCCCCTCCTCCTGTCACTCTACACCACCACCTCTCCCAGCTCTCC ACAAGCTCACAGCACCTCCCACCCAGACCAGACCAAGCTTTTCTACTCTT AACCTTCAGTGGTAGCCGGAAGTTGCTCAAGCAGTCTGCTGCGCGGAGAG TAGTACCCTACCTGCTCTTGCAACAAGGTCCACAAGCGCCACTTCCAAAA CATGATTTCTTCTGTTGCGTTCTTGACGGCACTGGCTGGCATGCTGGGCA ACACCATCACTAGGACGGAGGCGCTGAGCGTGCTCACACCGGCGGTAGCT GAGAGTGTCGCGTCAGGCAGGTGAGATACGACGACACCCTGCTGTAGGCT TTCCATGCAGCAGTGGGTACTGCTGCCGTTGCCACCCTTATCACTCACCT ACTGCTGCTGGAACCCGCAGCAGCACACATGCACACATACGCAGCAGTTG GTCTGCATGTTTTCCGTCTTCTCCCTGGTTCACCTGCTGTGTGCTGCTGT GCCAGACTGTTGAGTGAGAAGCGGCGTGGCACGTGTTGTTACTTCCGGAA GCGACATGGCACATCAAACGGCATTCCTCACCTCTCCCTTTCCGCCCCCT TCTCCACCCTCTCTCTCGGGCGGGTGTCCCGCTCTTCGCCGTTTGGCCGT TATTCCGTTTTGTTTTTTCCCTCCGCTTTTCTCCTTCTCGAACACGCAGG CCCTACATTGTGTCGTGGCAGGGCGCACAGGCGGACGACCGCTTCGAGGT CGACTTGCACTACTGCGGATCGTACTCGTTCTGCTTTGGAGAGGTGAGAA CAAGAGGATCTCCAATCCAAGCCCTGTATCATTTTGCACATGTGTATGTT TTACCCGCCCGCAAGGAGAATTTTCTGCTGGACGAGCCTGAAAACGTGTG GTCAGCCCTCGAGGCGTTGGTTGTCCGATCCACCGGTTGCCTATCAGTAT CCCGGGTGATGCACCATATCTACAACCGCAGCAGTAGTCTCGCTGTACTC AAAAGCTGCTGGGCCTTGACCCTTCTGGAAAAAATTAACGTCTGCGTCAG TTGGGACCAGTCGGGTGTTCCTGTCGAACGCTACAATACTACTACTGCTG GTGCTGTAGACGGCAGGCACCGTTTGGCGGTCTGTCGCTACTGTACCTAC AGTATAACGCCATGCAACGTGGTGCACAAAAGACAACCCTCGCCCGCAAC CTCCTGAGGCGAAACACTCCGCGTTGGTCGCCGAGTTTCTCACACCACCC CTCCCTCTCTTCTCTCTCTCCGATTTTTTTTCCACGCAGGCGGAGGACTG CGGTTTCTGGATAGCGAACGTTTGCAACGAGGCGGACGACGCCTGCATGA TCCAAGAGGACCAGAGTTCCCAGGTGACCTTCCCAGAACCAGTCGCCGGA CACTCGAACAACGGATACAGGGTCCGGATTTCGGAGGTCGGTACGGACAA CTTCCGGTGCTCGGAGGACTTCTACCTCGTGGCTTCGGCGGATGTCCTCG AATTCGGGGAGCCGGGCGGGCCGACGATGGAGGTGGTCGCGCCGGAGGCT AACGCGCTGGCTGTCGCGGGAGAGACGTACACCGTAGAGGTGAGCTAACT TGCAAGCATCTGCAGCAAGTGCTGATTTTTTTGCGTGTGGTTTTGTTGTG TTCGACTGTGTACAAGTTGTAAGATTATTTCCGTAGAAGCATGTAGCCAA TTATTTCCGTAGAATCACTACTACAAGCCAACGCTCAATTGCTGTCTATG CTGGGCACGACCAACCTTCCTTGCGCCCCCTGCTCTGTACTGCTGTATCT GCATCACAGTTCGATTACGACAACGGGTTCGGCGAACAGCTCGGGCGGTT CAAGATCGATCTCTACAAGGCGGAGGGGAACGGTGACTGCGGCAGCTGGG TCACCTCCGTCTGCGACAAGCCGGACATGGGCTGCCGTGACAGCGGTGAG TTTTTACAGTAGTTTTCTGTTGTGAGAGAAACTCCCCAGATTAATGTGCT GTACTGTGTCACAACCACCCGCTACTTACAAGTGCCGATGGTGCACAACA CAATATATCCGACGGCACCGACTGTAGATGGACCGAATTTCCAACCAGAC AACAGTACTTGTGCATCAAGCATAGTCAACGCTTCGATTACGCAACCACG CCCATCCATCTCCGTCTAACCCCACCCCCCCATCCTCCCCCTTGTGACTG CCGCGAACAACAGAGGGCGACTACGACGTGGTTATCCCAGCAGACTCGGA GGAAGGAATGTACATGATCCGCGTCGGTCTGTTTGGAGATGACTCCATCT ACGCGTGCTCTCCCTCCTTCGAGATCACGACCACCAATCCCGGTGTATCT GCTGCAGGCGGGGGGCTGTGGATGGACTCCGCCACTTCTTCGTAACAGCT TCTTCTCTGGATTAAGAACGAAAAAAGCTCTGGATTAGAACAATTAGGAC TTTTCGCGGACTGATGAAGTTTTTCACCCGCGGTGAAGATTCCTACTCAC GAATCAGAGGCTTTTCTCTCTGATCCACGTAGCTAGCGCAAAAAATGCCA CCTGACCTGACAGGCAAATTAACTAAAGTGAAGTAGGTAAACACAAGGCA TACTTCATAGAAGAAAGGTCCGGTATGTCCACACCTTGGTAACATGTGTA GTGTAGTTTGATGTATTGTCGGCTGTTTTCTACCTGACTGGTAGTATATA AAGTATATAATATGGTACTTGCACCTTCCTTGGCAGGGCAAGCAACCACT AGGATAAGTAAAGCATCTTGATGCTTTGGGTGATGTTCTGCGCAGTGTTG TAAAGCATCTTGATGCTTTGGGTGATGTTCTGCGCAGTGTTGTAAAGCAT CTTGATGCTTTGGGTGATGTTCTGCGCAGTGTTTCCGTGTCAGAAGGCTT ACGTCCTGACTTGAGGCTTTTCTTGGGGTTAAGGGTTATCATATCCTTGT TGGCGCCGTTTCTCGGAGCAAGGGATGTGAGTTGGCTACGACTACTCGTT CCTTGGAAAATTGTGGCCATTCGGCCGATTTCCTCCCAAGTTTTGTTGTT TTTGTTGTTTTCTTCGTTGTTGCGCCGATAGGGCTCTTTGTTGTTGGTTG GGGTGTGCTTGCTGGCTACTGCTGGGGCAACAATGCATGTTGGGGAAATT CTGATGCATGTTGGGAAAATTCTGATAGAACAGGATTATTTGTTCCATGT TTCGTTTTCGTTCACTCCAGGCGGAAGGTGACTTGTGCATGTTGGAGTGC CGGTATTTCAATTCGCGATTAAATCAAGGACTTGTTATCTAGACTTGACT TAGAGCAATGAGACCTGAAGGAAATGAATGGTTGGCGTGAACCAAACCAA TCCGGCCGTTTCCACCAAACAGATATCCTTTTTTGGCGCCATAACGTCGC GTTTGAGGTGAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:1950137..1953549-

>mRNA_E-siliculosus-1a_M_contig9.17087.1 ID=mRNA_E-siliculosus-1a_M_contig9.17087.1|Name=mRNA_E-siliculosus-1a_M_contig9.17087.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1662bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1950137..1953549- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGATTTCTTCTGTTGCGTTCTTGACGGCACTGGCTGGCATGCTGGGCAA
CACCATCACTAGGACGGAGGCGCTGAGCGTGCTCACACCGGCGGTAGCTG
AGAGTGTCGCGTCAGGCAGATGATTTCTTCTGTTGCGTTCTTGACGGCAC
TGGCTGGCATGCTGGGCAACACCATCACTAGGACGGAGGCGCTGAGCGTG
CTCACACCGGCGGTAGCTGAGAGTGTCGCGTCAGGCAGGCCCTACATTGT
GTCGTGGCAGGGCGCACAGGCGGACGACCGCTTCGAGGTCGACTTGCACT
ACTGCGGATCGTACTCGTTCTGCTTTGGAGAGGCCCTACATTGTGTCGTG
GCAGGGCGCACAGGCGGACGACCGCTTCGAGGTCGACTTGCACTACTGCG
GATCGTACTCGTTCTGCTTTGGAGAGGCGGAGGACTGCGGTTTCTGGATA
GCGAACGTTTGCAACGAGGCGGACGACGCCTGCATGATCCAAGAGGACCA
GAGTTCCCAGGTGACCTTCCCAGAACCAGTCGCCGGACACTCGAACAACG
GATACAGGGTCCGGATTTCGGAGGTCGGTACGGACAACTTCCGGTGCTCG
GAGGACTTCTACCTCGTGGCTTCGGCGGATGTCCTCGAATTCGGGGAGCC
GGGCGGGCCGACGATGGAGGTGGTCGCGCCGGAGGCTAACGCGCTGGCTG
TCGCGGGAGAGACGTACACCGTAGAGGCGGAGGACTGCGGTTTCTGGATA
GCGAACGTTTGCAACGAGGCGGACGACGCCTGCATGATCCAAGAGGACCA
GAGTTCCCAGGTGACCTTCCCAGAACCAGTCGCCGGACACTCGAACAACG
GATACAGGGTCCGGATTTCGGAGGTCGGTACGGACAACTTCCGGTGCTCG
GAGGACTTCTACCTCGTGGCTTCGGCGGATGTCCTCGAATTCGGGGAGCC
GGGCGGGCCGACGATGGAGGTGGTCGCGCCGGAGGCTAACGCGCTGGCTG
TCGCGGGAGAGACGTACACCGTAGAGTTCGATTACGACAACGGGTTCGGC
GAACAGCTCGGGCGGTTCAAGATCGATCTCTACAAGGCGGAGGGGAACGG
TGACTGCGGCAGCTGGGTCACCTCCGTCTGCGACAAGCCGGACATGGGCT
GCCGTGACAGCGTTCGATTACGACAACGGGTTCGGCGAACAGCTCGGGCG
GTTCAAGATCGATCTCTACAAGGCGGAGGGGAACGGTGACTGCGGCAGCT
GGGTCACCTCCGTCTGCGACAAGCCGGACATGGGCTGCCGTGACAGCGAG
GGCGACTACGACGTGGTTATCCCAGCAGACTCGGAGGAAGGAATGTACAT
GATCCGCGTCGGTCTGTTTGGAGATGACTCCATCTACGCGTGCTCTCCCT
CCTTCGAGATCACGACCACCAATCCCGGTGTATCTGCTGCAGGCGGGGGG
CTGTGGATGGACTCCGCCACTTCTTCGTAAAGGGCGACTACGACGTGGTT
ATCCCAGCAGACTCGGAGGAAGGAATGTACATGATCCGCGTCGGTCTGTT
TGGAGATGACTCCATCTACGCGTGCTCTCCCTCCTTCGAGATCACGACCA
CCAATCCCGGTGTATCTGCTGCAGGCGGGGGGCTGTGGATGGACTCCGCC
ACTTCTTCGTAA
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