mRNA_E-siliculosus-1a_M_contig9.17079.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.17079.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.17079.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17079.1 vs. uniprot
Match: A0A835Z1L6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1L6_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.540e-18
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:  103 EHVEGKASAEELEPYERLFRQHKGDLRAMFDELGEDPGKALKYPPPNAEEFARVYTRGGYTYVPDA 300
            EH  G  SA+EL+P   L+ +H GD+RA+F+ELGE PGKALK+PP +A +FAR Y  GGYTY   A
Sbjct:   27 EHAAGGPSADELKPIVALYERHGGDVRAIFEELGEHPGKALKHPPSDAADFARRYLGGGYTYTESA 92
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17079.1 vs. uniprot
Match: A0A7S2SCV1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCV1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.170e-13
Identity = 36/90 (40.00%), Postives = 51/90 (56.67%), Query Frame = 1 
Query:   58 LSKGAKSLRHTGIPEEHVEGKASAE----ELEPYERLFRQHKGDLRAMFDELGEDPGKALKYPPPNAEEFARVYTRGGYTYVPDAKLSTR 315
            L  GAK+L+ T +     EGK   E     +     L+ ++ G L  +FDELGE+P KA KYPP +AE+FA+ Y  G +TYV  A+   +
Sbjct:   13 LQAGAKNLKETTVAPRKAEGKGGDELDDKTIASLVSLYDKYNGSLDDIFDELGENPSKAKKYPPRDAEDFAQRYYAGAFTYVDPARAQAK 102
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17079.1 vs. uniprot
Match: A0A7S2FST1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FST1_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 4.130e-12
Identity = 41/98 (41.84%), Postives = 54/98 (55.10%), Query Frame = 1 
Query:   13 AESKDDRAVVLGAEDLSKGAKSLRHTGIPEEHVEGKA---SAEELEPYERLFRQHKGDLRAMFDELGEDPGKALKYPPPNAEEFARVYTRGGYTYVPD 297
            A++K   A  LG  DL  GAK L+      +  EGK    S   L     ++  H GD+ A++ ELGE+PGKA+KYPP  AE+FA+ Y  G  TY  D
Sbjct:   15 AQAKGGPAFSLG--DLQAGAKGLQQVEDAPKKAEGKGDDGSDAALGGLIEIWNNHGGDIEAIYAELGENPGKAIKYPPSGAEDFAQKYLDGKLTYDGD 110
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17079.1 vs. uniprot
Match: A0A6A3MD80_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3MD80_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.590e-10
Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:   31 RAVVLGAEDLSKGAKSLRHTGIPEEHVEG----KASAEELEPYERLFRQHKGDLRAMFDELGEDPGKALKYPPPNAEEFARVYTRGGYT 285
            RA  +   +L+K +K L  T    EH +      A AE+L+    L+ +   D++A+F+EL E+P KALKYPP +A EF + Y +G YT
Sbjct:    5 RAAAVSESELNKASKGLHATKGTREHSDSLEYDPAVAEKLQA---LYEKFDADVKAIFEELDENPRKALKYPPTSAAEFGKKYAQGFYT 90
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17079.1 vs. uniprot
Match: A0A6G0X775_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X775_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.240e-9
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:  139 EPYERLFRQHKGDLRAMFDELGEDPGKALKYPPPNAEEFARVYTRGGYTYV 291
            E  E L+ +H+GDLR +F+EL E+P KALK+PP +A +F   Y +G YTY 
Sbjct:   41 ERLEALYEKHRGDLRDIFEELDENPRKALKHPPADATDFGIKYAQGFYTYA 91
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17079.1 vs. uniprot
Match: H3GEZ2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GEZ2_PHYRM)

HSP 1 Score: 62.0 bits (149), Expect = 5.600e-9
Identity = 30/88 (34.09%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:   25 DDRAVVLGAEDLSKGAKSLRHTGIPEEHVEG-KASAEELEPYERLFRQHKGDLRAMFDELGEDPGKALKYPPPNAEEFARVYTRGGYT 285
            + +   +   +L+K +K L  T    EH +  +   +  E  + L+ +  GD++A+F+EL E+P KA+KYPP +A EF + Y +G YT
Sbjct:  316 EGKGTAVSESELNKASKGLHATKGAREHSDSLEFDPQVAEKLQALYEKFDGDIKAIFEELDENPRKAVKYPPTSAAEFGKKYAQGFYT 403
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17079.1 vs. uniprot
Match: A0A225W394_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W394_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.430e-8
Identity = 29/86 (33.72%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:   31 RAVVLGAEDLSKGAKSLRHTGIPEEHVEG-KASAEELEPYERLFRQHKGDLRAMFDELGEDPGKALKYPPPNAEEFARVYTRGGYT 285
            R   +   +L++ +K L  T    EH +  +   +  E  + L+ +  GD+ A+F+EL E+P KALK+PP +A +F   Y +G YT
Sbjct:    5 RGAAVSESELNQASKGLHATKGTREHSDSLEFDPQVAEKLKALYEKFNGDINAIFEELDENPRKALKHPPTSATDFGTKYAQGFYT 90
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17079.1 vs. uniprot
Match: A0A067C478_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067C478_SAPPC)

HSP 1 Score: 57.0 bits (136), Expect = 1.980e-8
Identity = 33/92 (35.87%), Postives = 49/92 (53.26%), Query Frame = 1 
Query:   16 ESKDDRAVVLGAEDLSKGAKSLRHTGIPEEHVEGKASAEELEPYERLFRQHKGDLRAMFDELGEDPGKALKYPPPNAEEFARVYTRGGYTYV 291
            ESK    V  G  +L K + +L+ T     H   +      E     +++H GDL+ +F+EL E+P KALK+PP +A +F   Y +G YTY 
Sbjct:    2 ESKQQALVSDG--ELLKSSNNLKATKANPRHDSLEYDPAVAERLAATYKKHGGDLKDIFEELDENPRKALKHPPSDANDFGVKYAQGFYTYA 91
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17079.1 vs. uniprot
Match: A0A1V9YFW8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YFW8_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.290e-8
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:  154 LFRQHKGDLRAMFDELGEDPGKALKYPPPNAEEFARVYTRGGYT 285
            L+ +H GDLR +F+EL E+P KALK+PP +AE+F   Y +G YT
Sbjct:   53 LYTKHHGDLRDIFEELNENPRKALKHPPSDAEDFGVKYAQGFYT 96
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17079.1 vs. uniprot
Match: A0A3F2RDA1_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RDA1_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 4.040e-8
Identity = 29/86 (33.72%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:   31 RAVVLGAEDLSKGAKSLRHTGIPEEHVEG-KASAEELEPYERLFRQHKGDLRAMFDELGEDPGKALKYPPPNAEEFARVYTRGGYT 285
            ++  +   +L+K +K L  T    EH +  +  +   +    L+ +  GD++A+F+EL EDP KALK+PP +A +F   Y +G YT
Sbjct:    5 KSAAVSESELNKASKQLHATKGTREHSDSLEYDSSIADKVAVLYEKLDGDIKAIFEELQEDPRKALKHPPQSAADFGTKYAQGFYT 90
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A835Z1L6_9STRA1.540e-1857.58Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2SCV1_9STRA5.170e-1340.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2FST1_9STRA4.130e-1241.84Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6A3MD80_9STRA1.590e-1039.33Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A6G0X775_9STRA1.240e-950.98Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
H3GEZ2_PHYRM5.600e-934.09Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A225W394_9STRA1.430e-833.72Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A067C478_SAPPC1.980e-835.87Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A1V9YFW8_9STRA3.290e-854.55Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A3F2RDA1_9STRA4.040e-833.72Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:1828004..1829672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size321
Model size321
Exons3
Ec32 orthologEc-07_000320.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelPythiales
COG Functional cat.S
EggNOG OGs1MI0R@121069,2D6UX@1,2T315@2759
EggNOG free text desc.function. Source PGD
Seed eggNOG ortholog115417.EPrPW00000017294
Seed ortholog evalue5.5e-10
Seed ortholog score70.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.17079.1prot_E-siliculosus-1a_M_contig9.17079.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 1828004..1829672 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936411.2244563-CDS-E-siliculosus-1a_M_contig9:1828003..18281091622936411.2244563-CDS-E-siliculosus-1a_M_contig9:1828003..1828109Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1828004..1828109 -
1696251065.8579576-CDS-E-siliculosus-1a_M_contig9:1828003..18281091696251065.8579576-CDS-E-siliculosus-1a_M_contig9:1828003..1828109Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1828004..1828109 -
1622936411.2452145-CDS-E-siliculosus-1a_M_contig9:1828687..18288001622936411.2452145-CDS-E-siliculosus-1a_M_contig9:1828687..1828800Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1828688..1828800 -
1696251065.8701296-CDS-E-siliculosus-1a_M_contig9:1828687..18288001696251065.8701296-CDS-E-siliculosus-1a_M_contig9:1828687..1828800Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1828688..1828800 -
1622936411.270167-CDS-E-siliculosus-1a_M_contig9:1829570..18296721622936411.270167-CDS-E-siliculosus-1a_M_contig9:1829570..1829672Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1829571..1829672 -
1696251065.8811426-CDS-E-siliculosus-1a_M_contig9:1829570..18296721696251065.8811426-CDS-E-siliculosus-1a_M_contig9:1829570..1829672Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1829571..1829672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.17079.1

>prot_E-siliculosus-1a_M_contig9.17079.1 ID=prot_E-siliculosus-1a_M_contig9.17079.1|Name=mRNA_E-siliculosus-1a_M_contig9.17079.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=107bp
MESKAESKDDRAVVLGAEDLSKGAKSLRHTGIPEEHVEGKASAEELEPYE
RLFRQHKGDLRAMFDELGEDPGKALKYPPPNAEEFARVYTRGGYTYVPDA
KLSTRK*
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mRNA from alignment at E-siliculosus-1a_M_contig9:1828004..1829672-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.17079.1 ID=mRNA_E-siliculosus-1a_M_contig9.17079.1|Name=mRNA_E-siliculosus-1a_M_contig9.17079.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1669bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1828004..1829672- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGAGTCGAAGGCGGAGTCTAAAGATGACAGGGCGGTGGTGCTTGGTGC
GGAAGACCTGAGCAAGGGGGCAAAAAGCCTACGACACACTGGCATTCCTG
AGGTTCGTTCGATACGGAAAAACTTGCTCATGTACGTACGTATACCAATC
ATAGCTAGCTATTATATGTAAATCGGAGGCCCGACATTGCAGTGCTCATC
AATTTTATTGAACCAACACCTGATGCGTGTGTGATTCCCGCGTAAGACCA
ACGTGGTGCGGTGTGCCGTCGATATGTGCAGATCGGGGATATTGAGAATG
ACACAACGCTCCTGTTGTAGGGGGGTGCAATCGCGAGACAGTATTAACAA
CAATCGCAGACCGATTACTAGTGTACGCCCATGTCGAGGATGGATACACT
ATAAGCTACCATATTCTACATAAGAAAAATACATTTGCCATCGCATATTG
CTTAAATGTTGCGACAACCTTGTTCTGCTTACCCCTTCTTCCGCAATCAA
CAGGATAGAACGCGAGCTTTTCTCGCTGTCGTCTTGTTTAGGCTGTATTT
CACAGCAGTGGTATCATCTCTTCGGTCTTTGGGGGCAGTGGTAGAACTGT
TGGCCACTTCAAACCACTCCAAGCTGACTTCTGCAAAAAAACAGCATACA
TATCTAGAGTTTGGCAGTAACTCCTGCGGAATGAGGCAGGGAAGGTGGGA
GTACAATCGACAAAGGAAAGGGAAATTTTCGTTGTCGGTGGGCTGAAATC
AGCTATAGTGTATGTATGAAACGCGTTCGATGTTTCTCCCTTCTGCTCTT
GTGAGTGATGTGCGCTATGCTACGTACGCCTTCCTCGTAAACGCAAGCAT
CATACGCCCTACAACCTATTAGGAGCACGTGGAAGGGAAGGCGTCGGCAG
AGGAGCTCGAGCCGTACGAGAGATTGTTCCGGCAGCACAAGGGGGACTTA
CGAGCAATGTTTGACGAGCTTGGAGAGGATCCCGGGTATGAAAGTAGGGA
CAACAACAACATCATGATGTGGGGGGAAGTGTAGAAAAGAACGAACTCCA
TTATCGTACGCTGTCAGGGTCAGGGATTGGTGGGAAGTTCATAAGGCCGG
GGACTGATATAAAACATGTAGCGCCACGATTGGACCCAGCGCAACGCCTT
TGGTAGTGTCACTTTGGAACTTTCAGTTTGATGAAGATGGGTGTCACTTT
GGAACTTTCAGTTTGATGACGATGGATCAACAACAGCGACCCATCATGCC
CGAATGAACGACGGCCGATGGTACCAATAGTTCCTTCGTACTACAGGCCC
ACCGCTGATAGCGTTGAAAACAAAGCCATGCGGGGTTGTCGACTCCCAGA
AATTGATGTATTATAGTACTGCTGTGTTGCGGCCTTCGGCACAACACGCG
ATTATTTTTCCAAAATGTGAATAGTTTCACAAAGCAATAGTCGATATTCA
TAGTATCCATTACCACTTGAACTCCTTGGGCAGCCGCGGCACCTCCACGA
CATAATTATCTGCAGCCTATTGCTGTTCCTACCCCCCTGTCGCCCGCTTT
CCATTCGAGACAGAAAAGCGCTCAAATACCCTCCGCCAAACGCAGAGGAG
TTCGCTAGGGTCTACACGAGGGGGGGGTACACCTACGTGCCCGACGCCAA
GTTGTCAACCCGGAAATGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:1828004..1829672-

>mRNA_E-siliculosus-1a_M_contig9.17079.1 ID=mRNA_E-siliculosus-1a_M_contig9.17079.1|Name=mRNA_E-siliculosus-1a_M_contig9.17079.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=642bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1828004..1829672- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGAGTCGAAGGCGGAGTCTAAAGATGACAGGGCGGTGGTGCTTGGTGC
GGAAGACCTGAGCAAGGGGGCAAAAAGCCTACGACACACTGGCATTCCTG
AGATGGAGTCGAAGGCGGAGTCTAAAGATGACAGGGCGGTGGTGCTTGGT
GCGGAAGACCTGAGCAAGGGGGCAAAAAGCCTACGACACACTGGCATTCC
TGAGGAGCACGTGGAAGGGAAGGCGTCGGCAGAGGAGCTCGAGCCGTACG
AGAGATTGTTCCGGCAGCACAAGGGGGACTTACGAGCAATGTTTGACGAG
CTTGGAGAGGATCCCGGGAGCACGTGGAAGGGAAGGCGTCGGCAGAGGAG
CTCGAGCCGTACGAGAGATTGTTCCGGCAGCACAAGGGGGACTTACGAGC
AATGTTTGACGAGCTTGGAGAGGATCCCGGAAAAGCGCTCAAATACCCTC
CGCCAAACGCAGAGGAGTTCGCTAGGGTCTACACGAGGGGGGGGTACACC
TACGTGCCCGACGCCAAGTTGTCAACCCGGAAATGAAAAAGCGCTCAAAT
ACCCTCCGCCAAACGCAGAGGAGTTCGCTAGGGTCTACACGAGGGGGGGG
TACACCTACGTGCCCGACGCCAAGTTGTCAACCCGGAAATGA
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