mRNA_E-siliculosus-1a_M_contig9.17078.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.17078.1 vs. uniprot
Match: D7G4K1_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K1_ECTSI) HSP 1 Score: 479 bits (1232), Expect = 1.160e-161 Identity = 321/427 (75.18%), Postives = 328/427 (76.81%), Query Frame = 3
Query: 621 MIIDNNFLRGGAGNRL-RPQQDXXXXXXXXXXXXXXXXXXGSDGGRTGLACGSTPATGRWTKKEHDDFLVGLEACGKDWIEISCHFVFSRTATQIRTHAQKYFTKVNRGQSFPEQPYESVSGKRNTCDDRSGFPGEERHRLNRPPRSSNS---CSSHSSSGESVVVLSSRTRSGVAKRKHAALAQEEQSRKQHHQDXXRQERPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----DDQRKVEGLPGSTPNHPCHGLNPYPVPVPSPLAPDLLYPEQQSRLPGVEWPAPLHGCGGMTAWFKEPRDAQHEAFGDECEQALFAFPDVAECNFGSSPLSSLLEDTPGAEYFGVPPTDRHGAAAAIAXXXXXXGDTAGGLGSRDGGSGADGGELDSTLAESRLGGPGGRHDWYPTEGWVDKQQVAHNVE 1877
MI DN LR GA N L RPQQD XXXXXXXXXX DGGRTGLACGSTPATGRWTKKEH DFLVGLEACGKDW+EISCHFVFSRTATQIRTHAQKYFTKVNRGQSFPEQPYESV GKRNTCDDRSG PG+ERH LNRP RSS+ C+SHSSSGESV LSSRTRSGVAKRKHAALAQEEQ RK+H +D QER XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DD RK QSR PGVEWPAPLH GGM A FKEPRDA+HE FGDECEQA F PDVAECNFGSSPLSS LEDTPGAEYFGVPPTDRHGAA AIA XXX GDTAGG GSR GGSG DG ELDSTLAESRLGG GG HDWYPTEGWVDKQQ A E
Sbjct: 1 MIFDN-LLRSGASNYLLRPQQDHGEETFEEXXXXXXXXXXXXDGGRTGLACGSTPATGRWTKKEHADFLVGLEACGKDWMEISCHFVFSRTATQIRTHAQKYFTKVNRGQSFPEQPYESVPGKRNTCDDRSGSPGDERHCLNRPTRSSSRSSVCNSHSSSGESVD-LSSRTRSGVAKRKHAALAQEEQRRKEHDEDQQHQERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDPRK------------------------------------QSRPPGVEWPAPLHDGGGMMARFKEPRDARHEDFGDECEQAFFTVPDVAECNFGSSPLSSFLEDTPGAEYFGVPPTDRHGAAPAIAAAXXX-GDTAGGPGSRHGGSGGDGEELDSTLAESRLGGGGGWHDWYPTEGWVDKQQAATQSE 388
BLAST of mRNA_E-siliculosus-1a_M_contig9.17078.1 vs. uniprot
Match: A0A6H5JC35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC35_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 2.000e-12 Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 3
Query: 789 GRWTKKEHDDFLVGLEACGKDWIEISCHFVFSRTATQIRTHAQKYFTKVNRGQSFPEQPYESV 977
GRWTK+EHD FL GL GK+W ++ V +R+A Q+RTH QKYF KV++G+ FPE+PYES+
Sbjct: 8 GRWTKEEHDAFLQGLVLHGKNW-DLIAPIVKTRSAVQVRTHGQKYFKKVDKGERFPEEPYESM 69
BLAST of mRNA_E-siliculosus-1a_M_contig9.17078.1 vs. uniprot
Match: A0A5B6YQC3_DAVIN (Putative transcription factor DIVARICATA-like n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6YQC3_DAVIN) HSP 1 Score: 69.7 bits (169), Expect = 2.660e-9 Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 3
Query: 795 WTKKEHDDFLVGLEACGK-DWIEISCHFVFSRTATQIRTHAQKYFTKVN 938
WT++EH FL+GLE CGK DW IS +FVFSRT TQ+ +HAQKYF ++N
Sbjct: 123 WTEEEHRLFLMGLERCGKGDWRSISRNFVFSRTPTQVASHAQKYFNRLN 171
BLAST of mRNA_E-siliculosus-1a_M_contig9.17078.1 vs. uniprot
Match: A0A1E7FY50_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FY50_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 2.710e-9 Identity = 27/52 (51.92%), Postives = 40/52 (76.92%), Query Frame = 3
Query: 792 RWTKKEHDDFLVGLEACGKDWIEISCHFVFSRTATQIRTHAQKYFTKVNRGQ 947
RWT++EH FL GL+ CG++W ++S + +RT+ QIR+HAQKYF+K+ R Q
Sbjct: 1 RWTQEEHQAFLEGLKDCGREWKKVSLR-IPTRTSAQIRSHAQKYFSKLQRDQ 51
BLAST of mRNA_E-siliculosus-1a_M_contig9.17078.1 vs. uniprot
Match: D8M6I0_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M6I0_BLAHO) HSP 1 Score: 67.0 bits (162), Expect = 5.830e-9 Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 3
Query: 741 SDGGRTGLACGSTPATGRWTKKEHDDFLVGLEACGKDWIEISCHFVFSRTATQIRTHAQKYFTKVNR 941
S G LA + TGRW +KEH+ FL GL+ G DW +I+ + +R Q+RTHAQKYF K+NR
Sbjct: 6 SSGSNIDLASEQSEKTGRWDEKEHELFLQGLQKYGNDWKQIA-GMISTRNLVQVRTHAQKYFQKINR 71
BLAST of mRNA_E-siliculosus-1a_M_contig9.17078.1 vs. uniprot
Match: A0A067D317_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D317_SAPPC) HSP 1 Score: 67.4 bits (163), Expect = 9.790e-9 Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 3
Query: 786 TGRWTKKEHDDFLVGLEACGKDWIEISCHFVFSRTATQIRTHAQKYFTKVNR 941
TGRWTKKEH+ FL GLE GK W IS + V +RT QIRTHAQKY K N+
Sbjct: 89 TGRWTKKEHELFLEGLERYGKSWKHIS-NLVVTRTLVQIRTHAQKYLQKQNK 139
BLAST of mRNA_E-siliculosus-1a_M_contig9.17078.1 vs. uniprot
Match: D7FXQ4_ECTSI (HTH myb-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ4_ECTSI) HSP 1 Score: 68.6 bits (166), Expect = 1.050e-8 Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 3
Query: 789 GRWTKKEHDDFLVGLEACGKDWIEISCHFVFSRTATQIRTHAQKYFTKVNRGQSFPEQPYES 974
GRWT +EH +FL G+E + +E + +RT Q+RTHAQKYF KV++G+ FP +PY S
Sbjct: 8 GRWTHEEHAEFLRGVELFKRSDLEAVASMLPTRTILQVRTHAQKYFDKVDKGEPFPNEPYPS 69
BLAST of mRNA_E-siliculosus-1a_M_contig9.17078.1 vs. uniprot
Match: D8LPL1_ECTSI (HTH myb-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL1_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 1.060e-8 Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 3
Query: 789 GRWTKKEHDDFLVGLEACGKDWI-EISCH-FVFSRTATQIRTHAQKYFTKVNRGQSFPEQPYES----VSGK 986
G+WT++EH+ FL GL W E + H V +R+A QIRTHAQKYF K+ RG+ FP QPY S SGK
Sbjct: 9 GKWTREEHEAFLSGL------WQHESNSHALVPTRSALQIRTHAQKYFDKIERGEKFPAQPYPSQYDAASGK 74
BLAST of mRNA_E-siliculosus-1a_M_contig9.17078.1 vs. uniprot
Match: G4ZZP8_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZZP8_PHYSP) HSP 1 Score: 62.0 bits (149), Expect = 1.330e-8 Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 3
Query: 789 GRWTKKEHDDFLVGLEACGKDWIEISCHFVFSRTATQIRTHAQKYFTKVNR 941
GRWTK+EH+ FL GL+ GK W +IS V +RT QIRTHAQKY K +R
Sbjct: 19 GRWTKREHELFLEGLQRFGKSWKKISS-LVHTRTLVQIRTHAQKYLQKQSR 68
BLAST of mRNA_E-siliculosus-1a_M_contig9.17078.1 vs. uniprot
Match: J9IK38_9SPIT (Myb-like DNA-binding domain, SHAQKYF class family protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IK38_9SPIT) HSP 1 Score: 69.3 bits (168), Expect = 1.570e-8 Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 3
Query: 786 TGRWTKKEHDDFLVGLEACGKDWIEISCHFVFSRTATQIRTHAQKYFTKVNRGQS 950
+GRWT +EH+ FLVGL+ GKDW I ++ SRT QIR+HAQKYF K+NR S
Sbjct: 307 SGRWTDEEHEKFLVGLKIYGKDWRLIE-EYIGSRTCAQIRSHAQKYFNKLNRNSS 360 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig9.17078.1 >prot_E-siliculosus-1a_M_contig9.17078.1 ID=prot_E-siliculosus-1a_M_contig9.17078.1|Name=mRNA_E-siliculosus-1a_M_contig9.17078.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=465bp MIIDNNFLRGGAGNRLRPQQDDREEVFEESGGGGGGSSSGSDGGRTGLACback to top mRNA from alignment at E-siliculosus-1a_M_contig9:1819366..1825565+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig9.17078.1 ID=mRNA_E-siliculosus-1a_M_contig9.17078.1|Name=mRNA_E-siliculosus-1a_M_contig9.17078.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6200bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1819366..1825565+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:1819366..1825565+ >mRNA_E-siliculosus-1a_M_contig9.17078.1 ID=mRNA_E-siliculosus-1a_M_contig9.17078.1|Name=mRNA_E-siliculosus-1a_M_contig9.17078.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2790bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1819366..1825565+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |