mRNA_E-siliculosus-1a_M_contig9.17077.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.17077.1 vs. uniprot
Match: A0A6H5JAF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF4_9PHAE) HSP 1 Score: 117 bits (293), Expect = 1.310e-24 Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 2
Query: 5432 WPDRLEPYNNISVIATLLAGFGLAIFPFPRSDLPEGHDFLLGLTGHVVYNFLMCCSFGTNMLVA 5623
W +RLEPY+NIS+IATL AG GLAIFP PRS++PEGH FLLGLTGHVVYNFLMCCSF TNMLVA
Sbjct: 151 WQNRLEPYSNISIIATLFAGVGLAIFPLPRSNVPEGHGFLLGLTGHVVYNFLMCCSFSTNMLVA 214
BLAST of mRNA_E-siliculosus-1a_M_contig9.17077.1 vs. uniprot
Match: D8LFK2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK2_ECTSI) HSP 1 Score: 104 bits (260), Expect = 3.820e-20 Identity = 51/73 (69.86%), Postives = 56/73 (76.71%), Query Frame = 2
Query: 3368 TMAQTDREALVALYDATDGANWTKNENWITVDDLSQWHGVEINGDGRVVKLMLFANNLRGPIPAGLGALDELQ 3586
TMAQTDR+ALVALY+AT GA W N+NW T LSQWHGVE+N GRVVKL L NNLRGPIP LGAL L+
Sbjct: 70 TMAQTDRKALVALYNATGGAEWKNNQNWTTSAALSQWHGVEVNTQGRVVKLSLGWNNLRGPIPKELGALSRLE 142
BLAST of mRNA_E-siliculosus-1a_M_contig9.17077.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 1.120e-18 Identity = 47/73 (64.38%), Postives = 53/73 (72.60%), Query Frame = 2
Query: 3371 MAQTDREALVALYDATDGANWTKNENWITVDDLSQWHGVEINGDGRVVKLMLFANNLRGPIPAGLGALDELQQ 3589
MAQTDR+ALVALY AT G NW +++NW T DL WHGV++N GRVVKL L NNL G IPA LG L LQQ
Sbjct: 1 MAQTDRDALVALYRATGGENWRESQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGQLANLQQ 73
BLAST of mRNA_E-siliculosus-1a_M_contig9.17077.1 vs. uniprot
Match: D8LFJ9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ9_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 2.190e-18 Identity = 49/77 (63.64%), Postives = 52/77 (67.53%), Query Frame = 2
Query: 3362 PSTMAQTDREALVALYDATDGANWTKNENWITVDDLSQWHGVEINGDGRVVKLMLFANNLRGPIPAGLGALDELQQL 3592
P TMAQTDREALVALY A GA W N NW T LSQWHGVE+N GRVV L L+ NNL+G IP LG L L L
Sbjct: 22 PYTMAQTDREALVALYTAIGGAKWRNNRNWNTSAALSQWHGVEVNSQGRVVNLFLWDNNLQGRIPTELGNLHMLDTL 98
BLAST of mRNA_E-siliculosus-1a_M_contig9.17077.1 vs. uniprot
Match: D8LL09_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL09_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 6.120e-18 Identity = 47/76 (61.84%), Postives = 56/76 (73.68%), Query Frame = 2
Query: 3365 STMAQTDREALVALYDATDGANWTKNENWITVDDLSQWHGVEINGDGRVVKLMLFANNLRGPIPAGLGALDELQQL 3592
STM QTDR+ALVALYDA G NW N NW DLS+WHG+ IN GRVV++ L ANNL+G IP LGAL +L++L
Sbjct: 49 STMPQTDRDALVALYDAAGGFNWKNNGNWNADADLSKWHGININDQGRVVEVHLAANNLQGSIPEALGALSKLERL 124
BLAST of mRNA_E-siliculosus-1a_M_contig9.17077.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 1.560e-17 Identity = 48/75 (64.00%), Postives = 54/75 (72.00%), Query Frame = 2
Query: 3362 PSTMAQTDREALVALYDATDGANWTKNENWITVDDLSQWHGVEINGDGRVVKLMLFANNLRGPIPAGLGALDELQ 3586
P TMAQTDRE+L A Y+ATDGA W +N NW + LS W+GVE N GRVVKL L +NNLRGPIP LG L LQ
Sbjct: 32 PPTMAQTDRESLTAFYNATDGAKWIRNTNWGSGAPLSDWYGVEANDQGRVVKLYLSSNNLRGPIPLELGNLSALQ 106
BLAST of mRNA_E-siliculosus-1a_M_contig9.17077.1 vs. uniprot
Match: D8LLG1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG1_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 9.380e-17 Identity = 49/74 (66.22%), Postives = 56/74 (75.68%), Query Frame = 2
Query: 3371 MAQTDREALVALYDATDGANWTKNENWITVDDLSQWHGVEINGDGRVVKLMLFANNLRGPIPAGLGALDELQQL 3592
MA TD +ALVALY ATDGANW +N NWIT DLSQW+GVE+N GRV L L++NNLRG IP L AL L+QL
Sbjct: 1 MAATDYDALVALYHATDGANWKQNRNWITDTDLSQWYGVELNDQGRVACLNLYSNNLRGLIPKELEALTMLEQL 74
BLAST of mRNA_E-siliculosus-1a_M_contig9.17077.1 vs. uniprot
Match: A0A6H5K3D6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D6_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 1.920e-16 Identity = 45/76 (59.21%), Postives = 50/76 (65.79%), Query Frame = 2
Query: 3365 STMAQTDREALVALYDATDGANWTKNENWITVDDLSQWHGVEINGDGRVVKLMLFANNLRGPIPAGLGALDELQQL 3592
ST TDR ALVAL++AT GANW KN W T L QW+GVE+N GRVVKL L NNL+G IP LG L L L
Sbjct: 6 STKMSTDRAALVALFNATGGANWKKNTKWNTDAPLGQWYGVEVNDAGRVVKLSLRYNNLKGHIPRQLGDLGALMTL 81
BLAST of mRNA_E-siliculosus-1a_M_contig9.17077.1 vs. uniprot
Match: D7FM75_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM75_ECTSI) HSP 1 Score: 97.8 bits (242), Expect = 2.080e-16 Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 2
Query: 3305 VFGVCPTNIRPFSVVSLQMPSTMAQTDREALVALYDATDGANWTKNENWITVDDLSQWHGVEINGDGRVVKLMLFANNLRGPIPAGLGALDELQQ 3589
+F +CPT P + P +DR+ALV+LY+AT GANW + ENW T DLSQW G++++ GRVV+L LF NNL+G IP +GALD+L++
Sbjct: 15 IFILCPTTSLPRCALFYSCPRRWPISDRDALVSLYNATGGANWKQKENWDTGADLSQWCGIKVDDQGRVVELNLFWNNLQGIIPKEMGALDKLEK 109
BLAST of mRNA_E-siliculosus-1a_M_contig9.17077.1 vs. uniprot
Match: D7G496_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G496_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 4.970e-16 Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 2
Query: 3371 MAQTDREALVALYDATDGANWTKNENWITVDDLSQWHGVEINGDGRVVKLMLFANNLRGPIPAGLGALDELQQL 3592
MAQTDR+ALVALY+AT G W N+NW T LSQW+ VE+N GRVVKL L+ NNL+GPIP +G L L+ L
Sbjct: 125 MAQTDRKALVALYNATGGVKWKNNQNWNTSAALSQWYRVEVNSQGRVVKLSLWNNNLQGPIPVEVGRLAVLEYL 198 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig9.17077.1 >prot_E-siliculosus-1a_M_contig9.17077.1 ID=prot_E-siliculosus-1a_M_contig9.17077.1|Name=mRNA_E-siliculosus-1a_M_contig9.17077.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=859bp MPSTMAQTDREALVALYDATDGANWTKNENWITVDDLSQWHGVEINGDGRback to top mRNA from alignment at E-siliculosus-1a_M_contig9:1795464..1819235- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig9.17077.1 ID=mRNA_E-siliculosus-1a_M_contig9.17077.1|Name=mRNA_E-siliculosus-1a_M_contig9.17077.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=23772bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1795464..1819235- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:1795464..1819235- >mRNA_E-siliculosus-1a_M_contig9.17077.1 ID=mRNA_E-siliculosus-1a_M_contig9.17077.1|Name=mRNA_E-siliculosus-1a_M_contig9.17077.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=5154bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1795464..1819235- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |