mRNA_E-siliculosus-1a_M_contig9.17064.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.17064.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.17064.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17064.1 vs. uniprot
Match: A0A5A7RE75_STRAF (Histone H4 n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7RE75_STRAF)

HSP 1 Score: 183 bits (465), Expect = 7.760e-58
Identity = 93/103 (90.29%), Postives = 96/103 (93.20%), Query Frame = 1 
Query:    1 CLDAERAVRVWAKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            C + ER  R   KGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   40 CPEEERVARGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 142
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17064.1 vs. uniprot
Match: UPI001BCA0B6E (histone H4-like n=1 Tax=Drosophila kikkawai TaxID=30033 RepID=UPI001BCA0B6E)

HSP 1 Score: 182 bits (461), Expect = 2.610e-57
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 1 
Query:   25 RVWAKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            +VW KGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   42 KVWEKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 136
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17064.1 vs. uniprot
Match: A0A8C4RDF2_ERPCA (Histone H4 n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=A0A8C4RDF2_ERPCA)

HSP 1 Score: 181 bits (458), Expect = 2.610e-57
Identity = 92/103 (89.32%), Postives = 96/103 (93.20%), Query Frame = 1 
Query:    1 CLDAERAVRVWAKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            CLD  +  +   KGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 CLDEVKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17064.1 vs. uniprot
Match: B4IQE1_DROSE (Histone H4 (Fragment) n=2 Tax=melanogaster group TaxID=32346 RepID=B4IQE1_DROSE)

HSP 1 Score: 180 bits (457), Expect = 3.080e-57
Identity = 90/95 (94.74%), Postives = 93/95 (97.89%), Query Frame = 1 
Query:   25 RVWAKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            + W KGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    3 KAWEKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 97
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17064.1 vs. uniprot
Match: A0A6J1P1Y2_BICAN (Histone H4 n=1 Tax=Bicyclus anynana TaxID=110368 RepID=A0A6J1P1Y2_BICAN)

HSP 1 Score: 180 bits (457), Expect = 3.710e-57
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 1 
Query:   25 RVWAKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            R W KGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    9 RDWEKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17064.1 vs. uniprot
Match: A0A498IMS8_MALDO (Histone H4 n=3 Tax=Maleae TaxID=721813 RepID=A0A498IMS8_MALDO)

HSP 1 Score: 179 bits (453), Expect = 1.510e-56
Identity = 89/95 (93.68%), Postives = 94/95 (98.95%), Query Frame = 1 
Query:   25 RVWAKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            +V+ KGGAKRHRK+LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    9 KVFGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17064.1 vs. uniprot
Match: UPI001BFB965C (Uncharacterized protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001BFB965C)

HSP 1 Score: 178 bits (452), Expect = 2.360e-56
Identity = 91/103 (88.35%), Postives = 94/103 (91.26%), Query Frame = 1 
Query:    1 CLDAERAVRVWAKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            C    R  R WAK  AKRHRKVL+DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    4 CRVVVRVARDWAKEEAKRHRKVLQDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 106
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17064.1 vs. uniprot
Match: A0A024G0M5_9STRA (Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA)

HSP 1 Score: 178 bits (451), Expect = 3.050e-56
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:   37 KGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            KGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   13 KGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.17064.1 vs. uniprot
Match: F0W2L9_9STRA (Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID=F0W2L9_9STRA)

HSP 1 Score: 178 bits (451), Expect = 3.050e-56
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:   37 KGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            KGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   13 KGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.17064.1 vs. uniprot
Match: F6VFV9_HORSE (Histone H4 n=1 Tax=Equus caballus TaxID=9796 RepID=F6VFV9_HORSE)

HSP 1 Score: 178 bits (451), Expect = 3.350e-56
Identity = 92/99 (92.93%), Postives = 94/99 (94.95%), Query Frame = 1 
Query:   13 ERAVRVWAKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            ER  R   KGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    8 ERVGRGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 106
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A7RE75_STRAF7.760e-5890.29Histone H4 n=1 Tax=Striga asiatica TaxID=4170 RepI... [more]
UPI001BCA0B6E2.610e-5795.79histone H4-like n=1 Tax=Drosophila kikkawai TaxID=... [more]
A0A8C4RDF2_ERPCA2.610e-5789.32Histone H4 n=1 Tax=Erpetoichthys calabaricus TaxID... [more]
B4IQE1_DROSE3.080e-5794.74Histone H4 (Fragment) n=2 Tax=melanogaster group T... [more]
A0A6J1P1Y2_BICAN3.710e-5795.79Histone H4 n=1 Tax=Bicyclus anynana TaxID=110368 R... [more]
A0A498IMS8_MALDO1.510e-5693.68Histone H4 n=3 Tax=Maleae TaxID=721813 RepID=A0A49... [more]
UPI001BFB965C2.360e-5688.35Uncharacterized protein n=1 Tax=Carya illinoinensi... [more]
A0A024G0M5_9STRA3.050e-56100.00Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepI... [more]
F0W2L9_9STRA3.050e-56100.00Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID... [more]
F6VFV9_HORSE3.350e-5692.93Histone H4 n=1 Tax=Equus caballus TaxID=9796 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:1650705..1651016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size312
Model size313
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelfabids
COG Functional cat.B
EggNOG OGs37UE8@33090,3GIMJ@35493,4JPPN@91835,COG2036@1,KOG3467@2759
EggNOG free text desc.protein heterodimerization activity
Seed eggNOG ortholog3847.GLYMA02G38921.1
Seed ortholog evalue3.3e-44
Seed ortholog score184.1
Taxonomic scopeViridiplantae
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936407.0885768-CDS-E-siliculosus-1a_M_contig9:1650704..16510161622936407.0885768-CDS-E-siliculosus-1a_M_contig9:1650704..1651016Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1650705..1651016 +
1696251063.9769495-CDS-E-siliculosus-1a_M_contig9:1650704..16510161696251063.9769495-CDS-E-siliculosus-1a_M_contig9:1650704..1651016Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1650705..1651016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.17064.1prot_E-siliculosus-1a_M_contig9.17064.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 1650705..1651016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.17064.1

>prot_E-siliculosus-1a_M_contig9.17064.1 ID=prot_E-siliculosus-1a_M_contig9.17064.1|Name=mRNA_E-siliculosus-1a_M_contig9.17064.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=104bp
CLDAERAVRVWAKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG*
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mRNA from alignment at E-siliculosus-1a_M_contig9:1650705..1651016+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.17064.1 ID=mRNA_E-siliculosus-1a_M_contig9.17064.1|Name=mRNA_E-siliculosus-1a_M_contig9.17064.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=312bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1650705..1651016+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TGTCTGGACGCGGAAAGGGCGGTAAGGGTCTGGGCAAAGGGCGGCGCCAA
GCGCCACCGCAAGGTACTTCGTGACAACATCCAGGGCATCACCAAGCCCG
CCATCCGCCGCCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCGGGACTC
ATCTACGAGGAGACCCGCGGCGTACTCAAGGTGTTCCTCGAGAACGTCAT
CCGCGACTCTGTCACCTACACGGAGCACGCTCGCAGGAAGACCGTGACGG
CCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGT
TTCGGCGGCTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:1650705..1651016+

>mRNA_E-siliculosus-1a_M_contig9.17064.1 ID=mRNA_E-siliculosus-1a_M_contig9.17064.1|Name=mRNA_E-siliculosus-1a_M_contig9.17064.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=624bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1650705..1651016+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TGTCTGGACGCGGAAAGGGCGGTAAGGGTCTGGGCAAAGGGCGGCGCCAA
GCGCCACCGCAAGGTACTTCGTGACAACATCCAGGGCATCACCAAGCCCG
CCATCCGCCGCCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCGGGACTC
ATCTACGAGGAGACCCGCGGCGTACTCAAGGTGTTCCTCGAGAACGTCAT
CCGCGACTCTGTCACCTACACGGAGCACGCTCGCAGGAAGACCGTGACGG
CCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGT
TTCGGCGGCTAATGTCTGGACGCGGAAAGGGCGGTAAGGGTCTGGGCAAA
GGGCGGCGCCAAGCGCCACCGCAAGGTACTTCGTGACAACATCCAGGGCA
TCACCAAGCCCGCCATCCGCCGCCTGGCTCGCCGTGGCGGTGTGAAGCGT
ATCTCGGGACTCATCTACGAGGAGACCCGCGGCGTACTCAAGGTGTTCCT
CGAGAACGTCATCCGCGACTCTGTCACCTACACGGAGCACGCTCGCAGGA
AGACCGTGACGGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGC
ACCCTCTACGGTTTCGGCGGCTAA
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