mRNA_E-siliculosus-1a_M_contig9.17059.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.17059.1 vs. uniprot
Match: D7G4I1_ECTSI (Predicted mitochondrial protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I1_ECTSI) HSP 1 Score: 770 bits (1988), Expect = 2.090e-266 Identity = 401/436 (91.97%), Postives = 405/436 (92.89%), Query Frame = 1
Query: 1 MRWLWAGALASTMGNVMASTSLDRSAAEILAFGSCGXXXXXXXXXXXXXXXXXXXXXPQHVSRISAEPATMSLTTRAPADSGDSSAMRPGREATAAGTRAAGLPSFWAAFSPSRAGPGRALVSPLSAKADSDENGVMDKKAEFYGNSAPGAVAPEGAEKQDEAAVEYAVGGDWEKSVQLIKAMRDSDFVPSVNAYVATIEACRKVGEYDHASTLLSDMNKVCLPEDLIKAYAAPHPNAPGVTQTQKVFCLAMMMRQDKIEPFEETYRAIMGLASKEKLWQVSLLLVEHLKRNGLVPGKFVYDEICSVLFKTGHPEMATMIFEDALGDKIEELNSFAPPELDLHNHTVSTALAAVRVVLLDMARKPSTRPFHDPTQELLIITGMGNNSKDGEAVIKPRVMELLSDMGLEPSMMRNNEGCIVLQPADLEAYMARTAGD 1308
MRWLWAGALASTMGNVMASTSLDRSAAE LAFGSCG PQHVSRISAEPATMSLTTRAPADSGDSS+MRPG ATAAGTRAAGLPSFWAA SPSRAG G ALVSPLSAKADSDE+GVMDKKAEFYGN APGAVAPEGAEKQDEAAVEYAVGGDWEKSVQLIKAMRDSDFVPSVNAYVATIEACRK GEYDHASTLLSDMNKVCLPEDLIKAYAAPHPNAPGVTQTQKVFCLAMMMRQDKIEPFEETYRAIMGLASKEKLWQVSLLLVEHLKRNGLVPGKFVYDEICSVLFKTGHPEMATMIFEDALGDKIEELNSFAPPELDLHNHTVSTALAAVRVVLLDMARKP+TR FHDP QELLIITGMGNNSKDGEAVIKPRVMELLSDMGLEPSMMRNNEGCIVLQPADL+AYMARTAGD
Sbjct: 1 MRWLWAGALASTMGNVMASTSLDRSAAETLAFGSCGSIGSGACSSSIRSGRAG----PQHVSRISAEPATMSLTTRAPADSGDSSSMRPGGGATAAGTRAAGLPSFWAALSPSRAGRGGALVSPLSAKADSDESGVMDKKAEFYGNLAPGAVAPEGAEKQDEAAVEYAVGGDWEKSVQLIKAMRDSDFVPSVNAYVATIEACRKAGEYDHASTLLSDMNKVCLPEDLIKAYAAPHPNAPGVTQTQKVFCLAMMMRQDKIEPFEETYRAIMGLASKEKLWQVSLLLVEHLKRNGLVPGKFVYDEICSVLFKTGHPEMATMIFEDALGDKIEELNSFAPPELDLHNHTVSTALAAVRVVLLDMARKPATRTFHDPAQELLIITGMGNNSKDGEAVIKPRVMELLSDMGLEPSMMRNNEGCIVLQPADLQAYMARTAGD 432
BLAST of mRNA_E-siliculosus-1a_M_contig9.17059.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 235 bits (600), Expect = 1.050e-67 Identity = 124/134 (92.54%), Postives = 126/134 (94.03%), Query Frame = -1
Query: 3522 PHSLSLFYHQTTIMSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 3923
P S+ + TT MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VK
Sbjct: 33 PLSVYFITNSTTTMSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
BLAST of mRNA_E-siliculosus-1a_M_contig9.17059.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 230 bits (587), Expect = 9.930e-67 Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = -1
Query: 3519 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 3884
MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VKK
Sbjct: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_E-siliculosus-1a_M_contig9.17059.1 vs. uniprot
Match: A0A835YUL6_9STRA (Smr domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUL6_9STRA) HSP 1 Score: 232 bits (592), Expect = 8.490e-64 Identity = 127/313 (40.58%), Postives = 188/313 (60.06%), Query Frame = 1
Query: 445 PGAVAPEGAEKQDEAAVEYAVGGDWEKSVQLIKAMRDSDFVPSVNAYVATIEACRKVGEYDHASTLLSDMNKVCLPEDLIKAYAAPHPNAPGVTQTQKVFCLA---------------MMMRQDKIEPFEETYRAIMGLASKEKLWQVSLLLVEHLKRNGLVPGKFVYDEICSVLFKTGHPEMATMIFEDALGDKIEELNSFAPPELDLHNHTVSTALAAVRVVLLDMARKPSTRPFHDPTQELLIITGMGNNSKDGEAVIKPRVMELLSDMGLEPS-----------------MMRNNEGCIVLQPADLEAY 1287
PGA A K ++A +YA GG+W K+V LI MR+ + PS+ AY TI A R+ E+D A LL+DM C+P DL YAA P+ TQTQ VF L + MR D++EP +TYRA+MG+ +K++LW +SLLL+EH++ G+ PGKF+Y+EIC+VL G ++A +++E +LG+ + E ++DLH+ T++TA AAVR L DM R+PS RPFHDP + IITG+G S++G AVIKP ++++L+ P+ + ++N GC+ +QP L+A+
Sbjct: 14 PGAEAAPETAKYNDAIKKYASGGEWAKAVVLIDKMREINLSPSIEAYGDTITALRRGLEFDRADALLADMYDACMPADLFAKYAAADPSDASSTQTQCVFALENXXXXXXXXXXXXLLLCMRTDQLEPDVDTYRAVMGMCTKDRLWHLSLLLLEHMRLRGVQPGKFIYNEICTVLDMEGKHDLAEIVYERSLGEGVFEPWIEDDNKVDLHSFTLNTARAAVRSALTDMLRQPSGRPFHDPAAPMHIITGVGRRSEEGVAVIKPAILDMLNVELQIPAEXXXXXXXXXXXXXXXXVQKHNPGCVEIQPQHLQAW 326
BLAST of mRNA_E-siliculosus-1a_M_contig9.17059.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 215 bits (547), Expect = 3.880e-61 Identity = 110/118 (93.22%), Postives = 117/118 (99.15%), Query Frame = -1
Query: 3531 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 3884
MSGKGKGGRGKKST++S+KAGLQFPV R+GR+LK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_E-siliculosus-1a_M_contig9.17059.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 216 bits (551), Expect = 5.880e-61 Identity = 115/141 (81.56%), Postives = 125/141 (88.65%), Query Frame = -1
Query: 3531 HTPHSLSLFYHQTTI--------MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 3929
H HSL++ T+ MSGKGKGGRGKKST++S+KAGLQFPV R+GR+LK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 29 HLVHSLAIPTSNTSSSHSSYPPNMSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169
BLAST of mRNA_E-siliculosus-1a_M_contig9.17059.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 211 bits (536), Expect = 6.980e-60 Identity = 106/118 (89.83%), Postives = 115/118 (97.46%), Query Frame = -1
Query: 3531 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 3884
MSGKGKGGRGKK T+RSAKAGLQFPVGR+GRF+K+GKY+SRVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_E-siliculosus-1a_M_contig9.17059.1 vs. uniprot
Match: K0T493_THAOC (Histone H2A n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T493_THAOC) HSP 1 Score: 209 bits (533), Expect = 2.020e-57 Identity = 109/124 (87.90%), Postives = 117/124 (94.35%), Query Frame = -1
Query: 3531 HQTTIMSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 3899
H TT MSGKGKGGRG KKSTT SAKAGLQFPVGR+GR+L++GKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKKARIIPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK
Sbjct: 47 HSTTTMSGKGKGGRGEKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKARIIPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKK 170
BLAST of mRNA_E-siliculosus-1a_M_contig9.17059.1 vs. uniprot
Match: A0A7S0DT92_9EUKA (Histone H2A n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DT92_9EUKA) HSP 1 Score: 204 bits (519), Expect = 4.470e-57 Identity = 107/133 (80.45%), Postives = 119/133 (89.47%), Query Frame = -1
Query: 3498 MSGKGKGGRGK----KSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK*APPWTS 3884
MSGKGKGGRGK KSTTRSA+AGLQFPVGR+ RFL+KG++A+RVG GAPVYLAAVLEYLTAE+LELAGNAARDNK++RIIPRH+QLA+RNDEELNKLLG VTIASGGVLPNIHAVLLPKK AP +S
Sbjct: 1 MSGKGKGGRGKGKAVKSTTRSARAGLQFPVGRISRFLRKGRFAARVGGGAPVYLAAVLEYLTAEILELAGNAARDNKRSRIIPRHVQLAIRNDEELNKLLGGVTIASGGVLPNIHAVLLPKKKATSSAPKKSS 133
BLAST of mRNA_E-siliculosus-1a_M_contig9.17059.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 202 bits (514), Expect = 7.120e-57 Identity = 105/122 (86.07%), Postives = 115/122 (94.26%), Query Frame = -1
Query: 3522 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 3884
MSGKGKGGRG KKSTT SAKAGLQFPVGR+GR+L++GKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK K
Sbjct: 1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig9.17059.1 >prot_E-siliculosus-1a_M_contig9.17059.1 ID=prot_E-siliculosus-1a_M_contig9.17059.1|Name=mRNA_E-siliculosus-1a_M_contig9.17059.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=437bp MRWLWAGALASTMGNVMASTSLDRSAAEILAFGSCGSIGSGACSSSSSSSback to top mRNA from alignment at E-siliculosus-1a_M_contig9:1625276..1635080+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig9.17059.1 ID=mRNA_E-siliculosus-1a_M_contig9.17059.1|Name=mRNA_E-siliculosus-1a_M_contig9.17059.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=9805bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1625276..1635080+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:1625276..1635080+ >mRNA_E-siliculosus-1a_M_contig9.17059.1 ID=mRNA_E-siliculosus-1a_M_contig9.17059.1|Name=mRNA_E-siliculosus-1a_M_contig9.17059.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2622bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1625276..1635080+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |