mRNA_E-siliculosus-1a_M_contig9.17053.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.17053.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.17053.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17053.1 vs. uniprot
Match: A0A6H5L9C8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9C8_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.460e-10
Identity = 32/54 (59.26%), Postives = 44/54 (81.48%), Query Frame = -1 
Query:   16 SKAIKRAAPKVLVSSRKTTRPLQLVSMDLAGSHGPSTGGAQYLIRILDENATYG 177
            SKAI+R+ PKV+  SR+TTRPL+ V+MDLAG  G S+GGA+Y+++ILD +  YG
Sbjct:  243 SKAIQRSVPKVISPSRRTTRPLERVAMDLAGPFGQSSGGAKYVMQILDHHTNYG 296
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17053.1 vs. uniprot
Match: A0A6H5KYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB5_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 8.960e-10
Identity = 32/54 (59.26%), Postives = 44/54 (81.48%), Query Frame = -1 
Query:   16 SKAIKRAAPKVLVSSRKTTRPLQLVSMDLAGSHGPSTGGAQYLIRILDENATYG 177
            SKAI+R+ PKV+  SR+TTRPL+ V+MDLAG  G S+GGA+Y+++ILD +  YG
Sbjct:  894 SKAIQRSVPKVISPSRRTTRPLERVAMDLAGPFGQSSGGAEYVMQILDHHTNYG 947
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17053.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 9.480e-10
Identity = 32/54 (59.26%), Postives = 45/54 (83.33%), Query Frame = -1 
Query:   16 SKAIKRAAPKVLVSSRKTTRPLQLVSMDLAGSHGPSTGGAQYLIRILDENATYG 177
            SKAI+R+ PKV+  SR+TTRPL+ V+MDLAG  G S+GGA+Y+++ILD + +YG
Sbjct:  725 SKAIQRSVPKVISPSRRTTRPLERVAMDLAGPFGQSSGGAKYVMQILDHHTSYG 778
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.17053.1 vs. uniprot
Match: A0A6H5KNS9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNS9_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.180e-9
Identity = 32/54 (59.26%), Postives = 44/54 (81.48%), Query Frame = -1 
Query:   16 SKAIKRAAPKVLVSSRKTTRPLQLVSMDLAGSHGPSTGGAQYLIRILDENATYG 177
            SKAI+R+ PKV+  SR+TTRPL+ V+MDLAG  G S+GGA+Y+++ILD +  YG
Sbjct:   55 SKAIQRSVPKVISPSRRTTRPLERVAMDLAGPFGQSSGGAKYVMQILDYHTDYG 108
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17053.1 vs. uniprot
Match: A0A6H5JE07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE07_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.210e-9
Identity = 32/54 (59.26%), Postives = 44/54 (81.48%), Query Frame = -1 
Query:   16 SKAIKRAAPKVLVSSRKTTRPLQLVSMDLAGSHGPSTGGAQYLIRILDENATYG 177
            SKAI+R+ PKV+  SR+TTRPL+ V+MDLAG  G S+GGA+Y+++ILD +  YG
Sbjct:  395 SKAIQRSVPKVISPSRRTTRPLERVAMDLAGPFGQSSGGAKYVMQILDHHTNYG 448
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.17053.1 vs. uniprot
Match: A0A6H5JN41_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN41_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.210e-9
Identity = 32/54 (59.26%), Postives = 44/54 (81.48%), Query Frame = -1 
Query:   16 SKAIKRAAPKVLVSSRKTTRPLQLVSMDLAGSHGPSTGGAQYLIRILDENATYG 177
            SKAI+R+ PKV+  SR+TTRPL+ V+MDLAG  G S+GGA+Y+++ILD +  YG
Sbjct:  855 SKAIQRSVPKVISPSRRTTRPLERVAMDLAGPFGQSSGGAKYVMQILDHHTNYG 908
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.17053.1 vs. uniprot
Match: A0A6H5JN93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN93_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.210e-9
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = -1 
Query:   16 GSKAIKRAAPKVLVSSRKTTRPLQLVSMDLAGSHGPSTGGAQYLIRILDENATYG 180
            GSK I+R+ PKV+  SR+TTRPL+ V+MDLAG  G S+GG +Y+I+ILD    YG
Sbjct:  468 GSKVIQRSVPKVISPSRRTTRPLERVAMDLAGPFGQSSGGTKYVIQILDHETNYG 522
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17053.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.260e-9
Identity = 32/54 (59.26%), Postives = 44/54 (81.48%), Query Frame = -1 
Query:   16 SKAIKRAAPKVLVSSRKTTRPLQLVSMDLAGSHGPSTGGAQYLIRILDENATYG 177
            SKAI+R+ PKV+  SR+TTRPL+ V+MDLAG  G S+GGA+Y+++ILD +  YG
Sbjct:  855 SKAIQRSVPKVISPSRRTTRPLERVAMDLAGPFGQSSGGAKYVMQILDHHTNYG 908
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.17053.1 vs. uniprot
Match: A0A6H5LEE5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE5_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.440e-9
Identity = 32/54 (59.26%), Postives = 44/54 (81.48%), Query Frame = -1 
Query:   16 SKAIKRAAPKVLVSSRKTTRPLQLVSMDLAGSHGPSTGGAQYLIRILDENATYG 177
            SKAI+R+ PKV+  SR+TTRPL+ V+MDLAG  G S+GGA+Y+++ILD +  YG
Sbjct:  154 SKAIQRSVPKVVSPSRRTTRPLERVAMDLAGPFGQSSGGAKYVMQILDHHTNYG 207
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.17053.1 vs. uniprot
Match: A0A6H5J7K8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7K8_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.560e-9
Identity = 31/54 (57.41%), Postives = 44/54 (81.48%), Query Frame = -1 
Query:   16 SKAIKRAAPKVLVSSRKTTRPLQLVSMDLAGSHGPSTGGAQYLIRILDENATYG 177
            SKAI+R+ PK++  SR+TTRPL+ V+MDLAG  G S+GGA+Y+++ILD +  YG
Sbjct:  475 SKAIQRSVPKIISPSRRTTRPLERVAMDLAGPFGQSSGGAKYVMQILDHHTNYG 528
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5L9C8_9PHAE5.460e-1059.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KYB5_9PHAE8.960e-1059.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAC2_9PHAE9.480e-1059.26Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KNS9_9PHAE1.180e-959.26Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JE07_9PHAE1.210e-959.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN41_9PHAE1.210e-959.26Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN93_9PHAE1.210e-958.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVD9_9PHAE1.260e-959.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LEE5_9PHAE1.440e-959.26Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J7K8_9PHAE1.560e-957.41Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:1561102..1562334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size564
Model size708
Exons2
Ec32 orthologEc-07_000600.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.17053.1prot_E-siliculosus-1a_M_contig9.17053.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 1561180..1562268 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936405.0664434-UTR-E-siliculosus-1a_M_contig9:1561101..15611791622936405.0664434-UTR-E-siliculosus-1a_M_contig9:1561101..1561179Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1561102..1561179 +
1696251063.187275-UTR-E-siliculosus-1a_M_contig9:1561101..15611791696251063.187275-UTR-E-siliculosus-1a_M_contig9:1561101..1561179Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1561102..1561179 +
1622936405.1636043-UTR-E-siliculosus-1a_M_contig9:1562268..15623341622936405.1636043-UTR-E-siliculosus-1a_M_contig9:1562268..1562334Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1562269..1562334 +
1696251063.2332828-UTR-E-siliculosus-1a_M_contig9:1562268..15623341696251063.2332828-UTR-E-siliculosus-1a_M_contig9:1562268..1562334Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1562269..1562334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936405.1332834-CDS-E-siliculosus-1a_M_contig9:1561179..15613011622936405.1332834-CDS-E-siliculosus-1a_M_contig9:1561179..1561301Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1561180..1561301 +
1696251063.2042005-CDS-E-siliculosus-1a_M_contig9:1561179..15613011696251063.2042005-CDS-E-siliculosus-1a_M_contig9:1561179..1561301Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1561180..1561301 +
1622936405.1511836-CDS-E-siliculosus-1a_M_contig9:1561826..15622681622936405.1511836-CDS-E-siliculosus-1a_M_contig9:1561826..1562268Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1561827..1562268 +
1696251063.2181237-CDS-E-siliculosus-1a_M_contig9:1561826..15622681696251063.2181237-CDS-E-siliculosus-1a_M_contig9:1561826..1562268Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1561827..1562268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.17053.1

>prot_E-siliculosus-1a_M_contig9.17053.1 ID=prot_E-siliculosus-1a_M_contig9.17053.1|Name=mRNA_E-siliculosus-1a_M_contig9.17053.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=188bp
MRPRQIHGDKLKRPRRLSGRDEDLGGGAFDRLRSAHPAQYLLRVTSHHRG
GRSGTPGHVEDGLREAAGRGHACKRPPQGAGVLCERWPHDGRGTGGRDAC
GEFEACTCHPESKAHGQEPRNHSSRLAVLCKPTLRGGLDGDLRFLTPVDE
TTGGRPFFLASAAVPWTGILFLCLKSPLCFPERSVLR*
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mRNA from alignment at E-siliculosus-1a_M_contig9:1561102..1562334+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.17053.1 ID=mRNA_E-siliculosus-1a_M_contig9.17053.1|Name=mRNA_E-siliculosus-1a_M_contig9.17053.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1233bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1561102..1562334+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TGAGACCGTAGCTCACCCATACGTGGCGTTTTCATCCAGGATCCGTATCA
GGTACTGAGCACCGCCGGTGGATGGCCCATGCGACCCCGCCAGATCCATG
GAGACAAGCTGAAGAGGCCGCGTCGTCTTTCGGGAAGAGACGAGGACCTT
GGGGGCGGCGCGTTTGATCGCCTTCGATCCGCACATCCGGCGCAATACTT
GTAAGTGCCAGTCAACTTGATGCCCACCTGCTTGGCTGTCTCGTAGAGGG
TGTTGACACGGCATGGTCGATGGAGCAATGGAACTCGGTAATGTTCATGC
TGCACTGCAAGTCGGACCGCATCATCTCCACGACTATCGCAGGGGTTGGG
GCTGCTCTGGATCGCCGTGGCATTCCTCGATGCAGTTGCCTGATCGATTT
TCGTGAATTTGACCCTTAACCCACCATCATCTTGGCCCGCTACTTGTTCA
ACAGCCTGTCGTTCTTTTCCTAAACAATAGGATCTCGAACGCCAAACCCC
GGGACAGCAGCAACATCCGTGAGGGGCACGCGGAAATTGTCAGCGTCATG
TATACCACCTCCAGGTCGCCGATGTATGCCGCCAGAATGCACTTGCCGTC
GCGCCAAGTATGAGCTGACGGGGCCCGCCCAATCCGCCTCGAGATCGCCG
ATTGTACTTTGTCAACTTCCGGTTGCAGGCCCTTTCAACGCCTTCTTCGG
CATGTTCTCCTTTTTTTGTGTGCAGGCTGCGGGTGACCTCCCATCATCGA
GGCGGAAGAAGCGGAACACCAGGTCATGTCGAGGATGGACTAAGGGAAGC
AGCAGGAAGGGGGCATGCTTGCAAAAGACCTCCGCAAGGGGCGGGAGTGT
TGTGCGAAAGATGGCCGCATGATGGCCGGGGGACGGGGGGTAGAGACGCG
TGTGGTGAATTCGAGGCCTGCACTTGCCACCCAGAGAGCAAGGCGCATGG
TCAAGAACCACGTAATCATTCGTCTCGCCTGGCTGTCTTGTGTAAGCCGA
CATTGCGGGGAGGTTTAGATGGTGATTTGCGATTCCTGACACCTGTTGAT
GAAACAACAGGCGGTCGCCCTTTTTTCCTTGCAAGCGCCGCTGTTCCTTG
GACGGGGATACTGTTTTTGTGCCTCAAATCCCCGCTCTGTTTCCCAGAGA
GAAGCGTCTTGCGTTGACTTGAAACATCGGCTAGCTGTGTTCGTTGACTC
TTTCACAGTACATGGAGCCAATACCTCGAAAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:1561102..1562334+

>mRNA_E-siliculosus-1a_M_contig9.17053.1 ID=mRNA_E-siliculosus-1a_M_contig9.17053.1|Name=mRNA_E-siliculosus-1a_M_contig9.17053.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1128bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1561102..1562334+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCGACCCCGCCAGATCCATGGAGACAAGCTGAAGAGGCCGCGTCGTCT
TTCGGGAAGAGACGAGGACCTTGGGGGCGGCGCGTTTGATCGCCTTCGAT
CCGCACATCCGGCGCAATACTTATGCGACCCCGCCAGATCCATGGAGACA
AGCTGAAGAGGCCGCGTCGTCTTTCGGGAAGAGACGAGGACCTTGGGGGC
GGCGCGTTTGATCGCCTTCGATCCGCACATCCGGCGCAATACTTGCTGCG
GGTGACCTCCCATCATCGAGGCGGAAGAAGCGGAACACCAGGTCATGTCG
AGGATGGACTAAGGGAAGCAGCAGGAAGGGGGCATGCTTGCAAAAGACCT
CCGCAAGGGGCGGGAGTGTTGTGCGAAAGATGGCCGCATGATGGCCGGGG
GACGGGGGGTAGAGACGCGTGTGGTGAATTCGAGGCCTGCACTTGCCACC
CAGAGAGCAAGGCGCATGGTCAAGAACCACGTAATCATTCGTCTCGCCTG
GCTGTCTTGTGTAAGCCGACATTGCGGGGAGGTTTAGATGGTGATTTGCG
ATTCCTGACACCTGTTGATGAAACAACAGGCGGTCGCCCTTTTTTCCTTG
CAAGCGCCGCTGTTCCTTGGACGGGGATACTGTTTTTGTGCCTCAAATCC
CCGCTCTGTTTCCCAGAGAGAAGCGTCTTGCGTTGAGCTGCGGGTGACCT
CCCATCATCGAGGCGGAAGAAGCGGAACACCAGGTCATGTCGAGGATGGA
CTAAGGGAAGCAGCAGGAAGGGGGCATGCTTGCAAAAGACCTCCGCAAGG
GGCGGGAGTGTTGTGCGAAAGATGGCCGCATGATGGCCGGGGGACGGGGG
GTAGAGACGCGTGTGGTGAATTCGAGGCCTGCACTTGCCACCCAGAGAGC
AAGGCGCATGGTCAAGAACCACGTAATCATTCGTCTCGCCTGGCTGTCTT
GTGTAAGCCGACATTGCGGGGAGGTTTAGATGGTGATTTGCGATTCCTGA
CACCTGTTGATGAAACAACAGGCGGTCGCCCTTTTTTCCTTGCAAGCGCC
GCTGTTCCTTGGACGGGGATACTGTTTTTGTGCCTCAAATCCCCGCTCTG
TTTCCCAGAGAGAAGCGTCTTGCGTTGA
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