mRNA_E-siliculosus-1a_M_contig9.17047.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.17047.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.17047.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17047.1 vs. uniprot
Match: D7G4H0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H0_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 4.370e-50
Identity = 102/139 (73.38%), Postives = 103/139 (74.10%), Query Frame = 1 
Query:  166 MHLKTRPKKMAILASRDAQVERANRYLLRQMTRIFTTPSALLPVHDSADGGSRGEGLGRCLSINVLSRKRELERIAMENRTWVKHMEKISPSYNAAAWERDWLERKRIIERLRTVRYAREKATPEEFSRRGVTHLRKQA 582
            MHLKTRPKKMAILASRDAQVERANR LLRQMTRIFTTPSALLPVHDSADGGSRGEGLGRCLSINVL RKRELERIAMEN+TW                                VRY R KATPEEFSRRGVTHLRKQA
Sbjct:    1 MHLKTRPKKMAILASRDAQVERANRDLLRQMTRIFTTPSALLPVHDSADGGSRGEGLGRCLSINVLCRKRELERIAMENKTW--------------------------------VRYERAKATPEEFSRRGVTHLRKQA 107
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17047.1 vs. uniprot
Match: A0A6H5JHR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR3_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 3.490e-36
Identity = 90/166 (54.22%), Postives = 94/166 (56.63%), Query Frame = 1 
Query:  166 MHLKTRPKKMAILASRDAQVERANR------------------YLLR---------QMTRIFTTPSALLPVHDSADGGSRGEGLGRCLSINVLSRKRELERIAMENRTWVKHMEKISPSYNAAAWERDWLERKRIIERLRTVRYAREKATPEEFSRRGVTHLRKQA 582
            MHLKTRPKKMA+LASRDAQVERANR                  YL +         QMTRIFTTPS LLPVHDSA+GGSRG GLGRCLSINVL RKRELERI MEN+TW                                       ATPEEF RRGVTHLRKQA
Sbjct:    1 MHLKTRPKKMAMLASRDAQVERANRTSANQLGTFRIAAEVEYFYLSKSFAGLSSPLQMTRIFTTPSTLLPVHDSANGGSRGGGLGRCLSINVLCRKRELERIVMENKTW---------------------------------------ATPEEFGRRGVTHLRKQA 127
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4H0_ECTSI4.370e-5073.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHR3_9PHAE3.490e-3654.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:1441393..1445217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size597
Model size597
Exons5
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG1011@1,KOG1011@2759
EggNOG free text desc.diacylglycerol binding
KEGG Pathwayko04721,map04721
KEGG koko:K15293
Seed eggNOG ortholog529818.AMSG_10782T0
Seed ortholog evalue1.9e-08
Seed ortholog score66.2
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.17047.1prot_E-siliculosus-1a_M_contig9.17047.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 1441393..1445217 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936403.409952-CDS-E-siliculosus-1a_M_contig9:1441392..14414821622936403.409952-CDS-E-siliculosus-1a_M_contig9:1441392..1441482Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1441393..1441482 -
1696251062.4979572-CDS-E-siliculosus-1a_M_contig9:1441392..14414821696251062.4979572-CDS-E-siliculosus-1a_M_contig9:1441392..1441482Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1441393..1441482 -
1622936403.4236493-CDS-E-siliculosus-1a_M_contig9:1441982..14420781622936403.4236493-CDS-E-siliculosus-1a_M_contig9:1441982..1442078Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1441983..1442078 -
1696251062.5088382-CDS-E-siliculosus-1a_M_contig9:1441982..14420781696251062.5088382-CDS-E-siliculosus-1a_M_contig9:1441982..1442078Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1441983..1442078 -
1622936403.491644-CDS-E-siliculosus-1a_M_contig9:1442834..14430061622936403.491644-CDS-E-siliculosus-1a_M_contig9:1442834..1443006Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1442835..1443006 -
1696251062.5179048-CDS-E-siliculosus-1a_M_contig9:1442834..14430061696251062.5179048-CDS-E-siliculosus-1a_M_contig9:1442834..1443006Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1442835..1443006 -
1622936403.5111203-CDS-E-siliculosus-1a_M_contig9:1443779..14439551622936403.5111203-CDS-E-siliculosus-1a_M_contig9:1443779..1443955Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1443780..1443955 -
1696251062.5393627-CDS-E-siliculosus-1a_M_contig9:1443779..14439551696251062.5393627-CDS-E-siliculosus-1a_M_contig9:1443779..1443955Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1443780..1443955 -
1622936403.5293715-CDS-E-siliculosus-1a_M_contig9:1445154..14452171622936403.5293715-CDS-E-siliculosus-1a_M_contig9:1445154..1445217Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1445155..1445217 -
1696251062.5540364-CDS-E-siliculosus-1a_M_contig9:1445154..14452171696251062.5540364-CDS-E-siliculosus-1a_M_contig9:1445154..1445217Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1445155..1445217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.17047.1

>prot_E-siliculosus-1a_M_contig9.17047.1 ID=prot_E-siliculosus-1a_M_contig9.17047.1|Name=mRNA_E-siliculosus-1a_M_contig9.17047.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=199bp
MHRSRVGMDAQKPGLARELHKAKFRAHHEKRLEEISRRPPGTGTLDNMPP
YTTHLMHLKTRPKKMAILASRDAQVERANRYLLRQMTRIFTTPSALLPVH
DSADGGSRGEGLGRCLSINVLSRKRELERIAMENRTWVKHMEKISPSYNA
AAWERDWLERKRIIERLRTVRYAREKATPEEFSRRGVTHLRKQARIAA*
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mRNA from alignment at E-siliculosus-1a_M_contig9:1441393..1445217-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.17047.1 ID=mRNA_E-siliculosus-1a_M_contig9.17047.1|Name=mRNA_E-siliculosus-1a_M_contig9.17047.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3825bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1441393..1445217- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCACCGCTCTCGGGTAGGGATGGACGCTCAGAAACCAGGGCTCGCCAG
GGAACTGCACAAGGTCAGAGGAAGCATCGCCCCCATGCCCTACTGCATGT
ACTTTGCGTGCCGTCTTCTATGTTTGTGCCTCCCGCCTGCGCCCCATCTA
GACCTCTAGCCGGGTGTACAAGCAGATACATGTAGAATGGTCCTCTGTTG
ACATTGCCGGGGTCCGCACATACATTCATTCGGAGGAGAAGATTGTACAA
CTCTCATTGGGTTCTGTGTACAAGCAGAGCAACAATACATGTACTGCCCC
AAATTTCTGTTTTTCGCATGACTCGCACAAAAAATGTCATCCTAGATTCC
TTGTTTGTACGCACAATGGAATGTATGTATATACAGTTAGTCACCTGTGC
TACATTTCAACAGTACAGCAGCACAGCCGTGTACAGTCTATGGAACTCTC
CTGTACTTGTATCGCGCCTAGACTACATAGATTAGTCGTCTCCATCCAAT
ACTTATAGGTCTAGTCTACATCTTCACCTTTTGGCATGGCTTGCAACGGG
CAATACGAATTATTCGGGTCATGATATGGTTCCGGCCGATGAAGTCTGGG
TAATCGCTTGGGTTTATTGGTACAGATAGGGCCCGGAGATAAGAAACGTC
AAAAGCGGGTCGAGCCTCAATTTCATATTCTGGGCAGAAGGACCAGCCGA
AGTCGGCCAAATTTCCTTTGGAAGAATTTCTTTTTTCCTTTGGGCTGTCG
CATCCTGCTGGTTCTTTTTTCTTCGTATTTCTTTCTAGCGAAGAAAACAA
CAACACACCAAGCCTTCATATAGCATTGAACCGACAGCTCGGTGTGGCGA
ACCTTGGAGTTGTGGCAGTCCAGCAGCAGTGGGTGACACAGCCCGCGGCC
GCTTTGGGGCTCGAGGGGGGCCGCAAAAATAACCCTCTCCCCCCCTTCCA
AAAATTTCATGACATGAGCTATGTATATGTAGGGGTGGGAGCCCGGCAGC
AGCATTAGCAGCGCGAGACGATTCTTAATAGACACGCTCCCACAGCTTGT
AATACCCCTTGTTTCTTTTGTCTTGGGGTATCGCACGATCATGCTTCTTA
TTGGGACGTTTCTTATGTTGTGGTCGAGATTGAGCTGCGTTTCTTAGCCC
TTTCTTCTTATTTTCCGTACGCATTTAAGTCGTTTTCTCAACAGAATTTG
TCTTAGTTGCGGGCCCTATCTGTAATCCGACATCACTGGCTCCGCCTTCC
TGCCTTTGCCAGGCAAAGTTTCGAGCTCATCATGAGAAGCGCCTGGAGGA
GATCAGCAGGAGGCCCCCCGGGACGGGTACCTTGGACAATATGCCCCCGT
ATACCACACATCTCATGCACCTCAAGACGCGGCCCAAGAAAATGGCTATC
CTGGCCTCCAGAGATGCTCAAGTTGAGAGGGCCAACAGGTACGCTCATAA
TTTTTCGTTCCGTTCTTCGTAGCAAGTTTTTGGCCGGTAGCCTGCTGTGC
ACGCTGGCTGTGAAATAAAACAGGACTTCCGCGAATCAGCTTGGGACATT
CCGCATTGTGGCGGAAGTCGAGTATTTCTTTCTGTCAAAGAGCTTGGCGC
GACTCTCGCCATCTCTGCAGGTTAATCACCCTTTGTTCAACTGTCGCCCC
ACAACCTGGGAGACTTTCTCATACATGAGGCGGTTGATGCAGTTCGTTGT
ACAGTTCCACTTTTACCATCTGTTCTCCCACATCAACAATCCTAGGACAG
CCCTCACCCTGACATTCGGAGGGGAAAGGGTCACCCCCTCCATCATGTTC
GGATCGGAGAGAGGAAGACTTCCACTACCCACAGTCGCATCCATCAGACC
CTTTCCAATCGCGGAACGCCTCACTACACTGCCTTGGGGAACTCCACCGT
TTCACACAGAGATCTACATGATCGGCAAGAGTATCGAGGATACGTATCCT
AGCAGACGATCGATACATGTCCGGAGCCTACCTACCTCGCACGCACACAT
ACCCTCGTCTTTGCAACACAAATTGTTCCTCGTAGAACTAAACATCTCAT
CAGTGTTTCCAAACCGGGCCTGAGGGCCCCTGCGCAGCTACGTGCACCAG
ACGGTGTTCCCAACACGTGCTGTTCGAAAATCTTCCCGGTTTACCACCCG
CTAATTCAACCGCCCCGCGCCCGCCGACTACGAACGCACTACAAACGGCA
TCCCTCAAAAGATATCTGTTGAGGCAGATGACGAGGATCTTCACCACCCC
GTCGGCCCTACTGCCGGTCCACGATTCCGCCGACGGGGGCAGTCGAGGGG
AGGGTCTCGGGCGGTGCCTCAGCATCAACGTTCTCTCCAGAAAACGAGAA
CTCGAGCGAATCGCGATGGAAAACAGGACTTGGGTGAGTCGACCCTACTG
ACCTCTGGGATCTCAGCAGCGGCGAGTATGGGCTTCCCTCAGTTGAGGTC
CCGATATAGTGCTGTTATGTGCCCTGCAAGGTTTGGCCGGTACTATACCA
GACACCGGTTCTACTTAAAGCACGTAATTACTTGGTGGTTTAGTGTGTGC
CCGCCGCACTACACCGGGTGCCGGCACTACTCGAGCGGCCCTATATATCG
GGACCCATGCTGGCGTAGCTCTCTGATGTGGAGCACGCAAAGAGGGCTCA
GCTCAACGACGGTTCTATGGGCAATGCTTGAGGCAAAGGTTAAGATTTTC
CCATGTAAGAATATTGAAGAGATTGGCGTTGGGAGTCCTGCACCGTCGGC
AAGACGCTCCCAGGTTTTGGCCTTTGCTGCCTTCGTGCTTATATCCCCTC
CTCTTCTGGATGTTCTCTTGCACGTGTTTAGTCCCCCCCACTCCGCCCCG
TGCCAAGATGGCAAGCACAGCACATTGATCAACGTTTGAAAAACACAGTA
GGTGAACATGTGTCTGCTCCAGGAATATGTGTCTGCTCCAGGAATAGCAT
ATTGACGTGCTTCTCAAGACGGACGGGTTGTAGTCGGTGGCATATTTCCG
AAGGCGTAGGGATAAAAAAACTGCTCATGTCCCTCCCTCCGCTCTACCCA
AATGGGCACACCTCGGCGGTTCGCCCATGATATATCGGCGGTTCGCGCGT
GGTACCGGATAATCTCCACGGGACGCTTCCTTTCCGAAGGTGAAGCACAT
GGAAAAGATATCTCCGAGCTACAACGCGGCCGCATGGGAGAGGGATTGGC
TAGAAAGAAAGAGGATTATTGAGCGCCTGAGAACGGTGAGGTGGCGGCCT
GGGTACTGAGTGTGATCGACTTTCTCTGGAAAATATCCAAAACTATGTAC
CACCACACATTTTCTCCTTAGTACAAGTACCAAGGTTGTTGCATTTTTCT
TGCCTTGTTCGTGTTGTCCTTTTCGTTTGAGTTTGCCGTGTACAGTGTTG
TGTTGACTTCTTCTGTTTCTCACGGTGATGACTCGTTGTTGGTGGATGCG
TCTACGGTGGTGATGACTCAGTGCGTTGTTCTTGGACCATGTGATGGCCT
CCTTTCAATCTTTGAGCGTGAGGGCCACCTCGATCACAACAGAGAGCTTC
ATACCCTGCATTGTGCAACGTTCGGCCGGTACGTGAGGCGTTGCGTCTAC
TCCGAAAGAACGCTAAAAACAATCGATATTGCCGTGTTGCTGGCGCCACG
GTAGAAGTTTTGCCTATTGGCAGCGTCCATGGTTTGCCCAGCATGCTCGC
ACACTTTCGACTTTCACACTCTTTTCTTGTACAAGGTCCGGTACGCGAGG
GAAAAGGCTACGCCGGAGGAGTTCAGCCGAAGAGGCGTGACACACCTTAG
AAAGCAGGCAAGAATAGCTGCGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:1441393..1445217-

>mRNA_E-siliculosus-1a_M_contig9.17047.1 ID=mRNA_E-siliculosus-1a_M_contig9.17047.1|Name=mRNA_E-siliculosus-1a_M_contig9.17047.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1194bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1441393..1445217- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCACCGCTCTCGGGTAGGGATGGACGCTCAGAAACCAGGGCTCGCCAG
GGAACTGCACAAGATGCACCGCTCTCGGGTAGGGATGGACGCTCAGAAAC
CAGGGCTCGCCAGGGAACTGCACAAGGCAAAGTTTCGAGCTCATCATGAG
AAGCGCCTGGAGGAGATCAGCAGGAGGCCCCCCGGGACGGGTACCTTGGA
CAATATGCCCCCGTATACCACACATCTCATGCACCTCAAGACGCGGCCCA
AGAAAATGGCTATCCTGGCCTCCAGAGATGCTCAAGTTGAGAGGGCCAAC
AGGCAAAGTTTCGAGCTCATCATGAGAAGCGCCTGGAGGAGATCAGCAGG
AGGCCCCCCGGGACGGGTACCTTGGACAATATGCCCCCGTATACCACACA
TCTCATGCACCTCAAGACGCGGCCCAAGAAAATGGCTATCCTGGCCTCCA
GAGATGCTCAAGTTGAGAGGGCCAACAGATATCTGTTGAGGCAGATGACG
AGGATCTTCACCACCCCGTCGGCCCTACTGCCGGTCCACGATTCCGCCGA
CGGGGGCAGTCGAGGGGAGGGTCTCGGGCGGTGCCTCAGCATCAACGTTC
TCTCCAGAAAACGAGAACTCGAGCGAATCGCGATGGAAAACAGGACTTGG
ATATCTGTTGAGGCAGATGACGAGGATCTTCACCACCCCGTCGGCCCTAC
TGCCGGTCCACGATTCCGCCGACGGGGGCAGTCGAGGGGAGGGTCTCGGG
CGGTGCCTCAGCATCAACGTTCTCTCCAGAAAACGAGAACTCGAGCGAAT
CGCGATGGAAAACAGGACTTGGGTGAAGCACATGGAAAAGATATCTCCGA
GCTACAACGCGGCCGCATGGGAGAGGGATTGGCTAGAAAGAAAGAGGATT
ATTGAGCGCCTGAGAACGGTGAAGCACATGGAAAAGATATCTCCGAGCTA
CAACGCGGCCGCATGGGAGAGGGATTGGCTAGAAAGAAAGAGGATTATTG
AGCGCCTGAGAACGGTCCGGTACGCGAGGGAAAAGGCTACGCCGGAGGAG
TTCAGCCGAAGAGGCGTGACACACCTTAGAAAGCAGGCAAGAATAGCTGC
GTAAGTCCGGTACGCGAGGGAAAAGGCTACGCCGGAGGAGTTCAGCCGAA
GAGGCGTGACACACCTTAGAAAGCAGGCAAGAATAGCTGCGTAA
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