mRNA_E-siliculosus-1a_M_contig9.17028.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.17028.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.17028.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17028.1 vs. uniprot
Match: D7G1F8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1F8_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 2.880e-92
Identity = 181/192 (94.27%), Postives = 184/192 (95.83%), Query Frame = 2 
Query:   41 MASFNPQEWTPGYDENGVNCWFNKTTRGRVYGRFPPQMQVGLSPIVGGPGVNVPTSTQFNPASALDQEKQWKQALAGAWREYQTDGDEKKPYWYNEISGARTWDKPDTSDAQKPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEQWQQLRTAKGRRYWYNEETGASQYDTPNCLRKYR 616
            MASFNPQEWTPGYDE+GVNCWFNKTTRGRVYGRFPPQMQVGLSPIVGGPGVNVP STQFNPAS L+ EKQWKQALAG W EYQTDGDEKKPYWYNEISG RTWDKPDT+ AQKPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEQWQQLRT KGRRYWYNEETGASQYDTPNCLRKYR
Sbjct:    1 MASFNPQEWTPGYDEHGVNCWFNKTTRGRVYGRFPPQMQVGLSPIVGGPGVNVPASTQFNPASPLEAEKQWKQALAGGWTEYQTDGDEKKPYWYNEISGDRTWDKPDTNGAQKPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEQWQQLRTEKGRRYWYNEETGASQYDTPNCLRKYR 192
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17028.1 vs. uniprot
Match: A0A6H5JG93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG93_9PHAE)

HSP 1 Score: 274 bits (700), Expect = 8.550e-86
Identity = 164/191 (85.86%), Postives = 169/191 (88.48%), Query Frame = 2 
Query:   41 MASFNPQEWTPGYDENGVNCWFNKTTRGRVYGRFPPQMQVGLSPIVGGPGVNVPTSTQFNPASALDQEKQWKQALAGAWREYQTDGDEKKPYWYNEISGARTWDKPDTSDAQKPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEQWQQLRTAKGRRYWYNEETGASQYDTPNCLRKY 613
            MASFNP EWTPGYDENGVNCWFNKTTR RVYG FPPQMQVGLSPIVGGPGV+VP STQFNPASALDQEKQWKQALAGAWRE+QT+GDE+KPYWYNEISGARTWDKPDTSDA+KP       XXXXXXXXXXXXXXXXXXXXXXXXXXXXX      SEQWQQLRT KGRRYWYNE TG SQY TP CLRKY
Sbjct:    1 MASFNPHEWTPGYDENGVNCWFNKTTRLRVYGCFPPQMQVGLSPIVGGPGVSVPASTQFNPASALDQEKQWKQALAGAWREFQTEGDERKPYWYNEISGARTWDKPDTSDARKP-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTKKESEQWQQLRTTKGRRYWYNEVTGVSQYATPKCLRKY 184
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1F8_ECTSI2.880e-9294.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG93_9PHAE8.550e-8685.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:1240797..1243463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size579
Model size1785
Exons3
Ec32 orthologEc-07_000860.1
Ec32 ortholog descriptionWW domain
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.17028.1prot_E-siliculosus-1a_M_contig9.17028.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 1240837..1242297 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936398.7935576-UTR-E-siliculosus-1a_M_contig9:1240796..12408361622936398.7935576-UTR-E-siliculosus-1a_M_contig9:1240796..1240836Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1240797..1240836 +
1696251060.3586144-UTR-E-siliculosus-1a_M_contig9:1240796..12408361696251060.3586144-UTR-E-siliculosus-1a_M_contig9:1240796..1240836Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1240797..1240836 +
1622936398.8771236-UTR-E-siliculosus-1a_M_contig9:1242297..12434631622936398.8771236-UTR-E-siliculosus-1a_M_contig9:1242297..1243463Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1242298..1243463 +
1696251060.4050407-UTR-E-siliculosus-1a_M_contig9:1242297..12434631696251060.4050407-UTR-E-siliculosus-1a_M_contig9:1242297..1243463Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1242298..1243463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936398.8167741-CDS-E-siliculosus-1a_M_contig9:1240836..12408981622936398.8167741-CDS-E-siliculosus-1a_M_contig9:1240836..1240898Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1240837..1240898 +
1696251060.3682983-CDS-E-siliculosus-1a_M_contig9:1240836..12408981696251060.3682983-CDS-E-siliculosus-1a_M_contig9:1240836..1240898Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1240837..1240898 +
1622936398.8357785-CDS-E-siliculosus-1a_M_contig9:1241242..12413991622936398.8357785-CDS-E-siliculosus-1a_M_contig9:1241242..1241399Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1241243..1241399 +
1696251060.3779428-CDS-E-siliculosus-1a_M_contig9:1241242..12413991696251060.3779428-CDS-E-siliculosus-1a_M_contig9:1241242..1241399Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1241243..1241399 +
1622936398.85937-CDS-E-siliculosus-1a_M_contig9:1241937..12422971622936398.85937-CDS-E-siliculosus-1a_M_contig9:1241937..1242297Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1241938..1242297 +
1696251060.3882582-CDS-E-siliculosus-1a_M_contig9:1241937..12422971696251060.3882582-CDS-E-siliculosus-1a_M_contig9:1241937..1242297Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1241938..1242297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.17028.1

>prot_E-siliculosus-1a_M_contig9.17028.1 ID=prot_E-siliculosus-1a_M_contig9.17028.1|Name=mRNA_E-siliculosus-1a_M_contig9.17028.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=193bp
MASFNPQEWTPGYDENGVNCWFNKTTRGRVYGRFPPQMQVGLSPIVGGPG
VNVPTSTQFNPASALDQEKQWKQALAGAWREYQTDGDEKKPYWYNEISGA
RTWDKPDTSDAQKPPPPPPPASSSQSPAPSSQPQEPSPHRDNGGKAGGAG
EKKKKESEQWQQLRTAKGRRYWYNEETGASQYDTPNCLRKYR*
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mRNA from alignment at E-siliculosus-1a_M_contig9:1240797..1243463+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.17028.1 ID=mRNA_E-siliculosus-1a_M_contig9.17028.1|Name=mRNA_E-siliculosus-1a_M_contig9.17028.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2667bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1240797..1243463+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTGACCCGGTACCGATACCGACAAACTGCGTAACAAGAATATGGCGAGCT
TCAATCCTCAGGAGTGGACACCCGGCTACGATGAAAACGGTGTCAACTGC
TGGTGAGCAACAACCGGACCGCGTTTGCTTGGTAGGAACTTCGAGAACGT
AATTGTATGAAGCAACCGCCCAATATATATCGAACGGATAGTCTAGCCCC
ACTACAGTACGGTGATTGCAGGCAAAAAACTACATACTGTAGTAGCGATC
ATCTGCCCCGCCCAGCGATGAACGGCTGTCTGCTTCCGGAAACCCGAAAT
ACCTACAGCACTTCTTTTTGAGATGTGAACGGTTCAGGGCAATGTACGTT
TGATACCATCGGTGCCTCTGCCACCACCCTTACCTCTTCCCTGGATTACG
CGTCTTTTCTGCGCAATAACCTCTTCCTCCTGTGTGCTCTCAACAGGTTC
AACAAGACAACTAGAGGAAGGGTGTACGGGCGCTTTCCACCGCAGATGCA
GGTGGGGCTGTCGCCCATTGTTGGCGGCCCCGGCGTTAACGTTCCCACCA
GCACCCAGTTCAACCCAGCTTCGGCCCTAGACCAGGAAAAGCAGTGGAAA
CAGGTGCGTGTGTGTTTGGGTGAGTTTCGAGGGTGAGGGTAAGGAAGAGG
GAGAGGGAAACGGACAGGAGAGAGGAGCAACATGCAGCAGTGGGTAGCGG
AATGCGAAGGTCCCATTGTTTCGGACAAGAGTGTTGTCTACAGCATGCAA
TGCCAAACCTGACTGGGCAGGCTACACTTCTAGCACAACGATGGTCTTGA
TCGCGCCGACGAAATCGACATAGAACGTCAAACAACGAACATAGACGAAC
TCCACCGGTCGTTGTTGACTTTGGAAGTTATCCGCTGAACGTTGCGCTGT
CGACTTGAACCGTCTACAGACCAACAGATCCTGTCGTCGGCCAAAGTATC
TGTAATCGACACTTATTCTTGAGGAAAAATATTGGAAAGCATGCGGTTCA
ATACACCAAGCATGGAAACAAGTAACAGTCCGTAGAAATCACTCGGAGCA
GATGGAGGTTTCAATCTGCTCTGAACTGACTCAGCTGTACTTAAGTTTCG
CACGGGATTAAAATTTCCTCCATGAACACTTTGAATAACAGGCTCTGGCC
GGAGCGTGGAGGGAGTACCAAACGGACGGAGACGAGAAGAAGCCCTACTG
GTACAACGAAATATCCGGGGCCAGAACTTGGGACAAGCCCGACACGAGCG
ACGCGCAGAAGCCCCCGCCGCCGCCACCCCCGGCGTCTTCCTCCCAGTCC
CCGGCGCCTTCCTCCCAGCCGCAGGAGCCTTCTCCCCATAGGGACAACGG
AGGCAAGGCCGGCGGCGCCGGCGAGAAAAAGAAGAAGGAATCTGAGCAGT
GGCAACAGCTTCGCACCGCGAAGGGCCGCAGATACTGGTACAATGAAGAA
ACGGGGGCGTCGCAGTACGACACTCCGAACTGCCTCAGGAAATACCGCTG
AAAGAACGGCACTACTACGACCACCACTGATGAGCGGGCCGGGGGACGTA
AGTAGATTCTGTTGGCAGCAAAGAAAGGCGCGAACTGATGATGGTTCCGG
GTGTCTATCAGAGTACTATGCTCATGAGTGTCTGCTGGCAGCCGCATGTA
CGTACGAGAATAGTTGGGGGGGAAAACGAGCGTTGAACCCGTGAGGTAAT
ACAGGTGCACCCGCTCTGCGGGAAGGGCCTGCGTACAGCTAGGCAAAGCC
TGTGGCTCATCTGTGTTTGGGCGTTTGCGTTGTAGAGTCCCCTTGACGTA
TTTTCGACTTAAGAACCTCCGACCCAATGAACGTAAACCTAACGAGTAGA
TATTTCCTTGCATACCGTGAGCCGTGTTGTGTCCAGTTCCTTCCGTGTTG
AGGTGTAGTTTCGTAATGCTGGACACGATCACACTCTTAGAAGTAGGGAG
ACCCGCTTAGAAAGCGTGCCGCCATAGTGTGTATGTACGCAGAAAACTGT
TGGATTTTGGGTACTGTAGAAGTTGTTTCTTCGAGAGATTTTCCCTATTC
GGAATCCTTCACTCTCCGGTCTTCTTGTGTTGTTGGTCGCCATAGCATGG
TCCCCTACCCCTTTCGTTATTGGGCCTGTGTTTTGGTTTGAAGTTTTGAG
CAAGAATTTCGGACAAAAAGTGTACATAGCAAACCCGCGTTGATCTGGCC
CATGGCCTCAAGTAGGTGCGCGCTGTTTGTTGGGGGGCGTCGGCGATATC
GACCCTCGTCGTTGTATTTGAGAAATAATCGAATGTCGTACAGCAGTGTC
AAGGGCGTTTTCGTAGGGTTGTGTCGTAGCCAGTAGAAGTAGTCAAGTTC
AGCCTTTTAGTCTTTTGTCGGCGGAGTTTCACAGAAGAACTATATGCACG
GTGTCGATTGTTTGGGCCCCTGGATGGCGTGTTGTCGGATGTCTCATAGT
TCGTTCGTACCTCTCTGTATAGTTTGCCTTCGTGTCCAAGACGGGTGCGT
CCGGCATATTTACCGTAGGCACACAGAGATCACTCGTGTAGTTTTCCCAG
ACGTAACGCTAAAAGAAGAAATTCTTATGCATAAACATTTCTCGAACCAA
AGTGCAAACCATATCTCGACACCTTTCACATTCGAAAAAGGGAAGGGGAC
GACGATTGAATCTTTCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:1240797..1243463+

>mRNA_E-siliculosus-1a_M_contig9.17028.1 ID=mRNA_E-siliculosus-1a_M_contig9.17028.1|Name=mRNA_E-siliculosus-1a_M_contig9.17028.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1158bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1240797..1243463+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCGAGCTTCAATCCTCAGGAGTGGACACCCGGCTACGATGAAAACGG
TGTCAACTGCTGATGGCGAGCTTCAATCCTCAGGAGTGGACACCCGGCTA
CGATGAAAACGGTGTCAACTGCTGGTTCAACAAGACAACTAGAGGAAGGG
TGTACGGGCGCTTTCCACCGCAGATGCAGGTGGGGCTGTCGCCCATTGTT
GGCGGCCCCGGCGTTAACGTTCCCACCAGCACCCAGTTCAACCCAGCTTC
GGCCCTAGACCAGGAAAAGCAGTGGAAACAGGTTCAACAAGACAACTAGA
GGAAGGGTGTACGGGCGCTTTCCACCGCAGATGCAGGTGGGGCTGTCGCC
CATTGTTGGCGGCCCCGGCGTTAACGTTCCCACCAGCACCCAGTTCAACC
CAGCTTCGGCCCTAGACCAGGAAAAGCAGTGGAAACAGGCTCTGGCCGGA
GCGTGGAGGGAGTACCAAACGGACGGAGACGAGAAGAAGCCCTACTGGTA
CAACGAAATATCCGGGGCCAGAACTTGGGACAAGCCCGACACGAGCGACG
CGCAGAAGCCCCCGCCGCCGCCACCCCCGGCGTCTTCCTCCCAGTCCCCG
GCGCCTTCCTCCCAGCCGCAGGAGCCTTCTCCCCATAGGGACAACGGAGG
CAAGGCCGGCGGCGCCGGCGAGAAAAAGAAGAAGGAATCTGAGCAGTGGC
AACAGCTTCGCACCGCGAAGGGCCGCAGATACTGGTACAATGAAGAAACG
GGGGCGTCGCAGTACGACACTCCGAACTGCCTCAGGAAATACCGCTGAGC
TCTGGCCGGAGCGTGGAGGGAGTACCAAACGGACGGAGACGAGAAGAAGC
CCTACTGGTACAACGAAATATCCGGGGCCAGAACTTGGGACAAGCCCGAC
ACGAGCGACGCGCAGAAGCCCCCGCCGCCGCCACCCCCGGCGTCTTCCTC
CCAGTCCCCGGCGCCTTCCTCCCAGCCGCAGGAGCCTTCTCCCCATAGGG
ACAACGGAGGCAAGGCCGGCGGCGCCGGCGAGAAAAAGAAGAAGGAATCT
GAGCAGTGGCAACAGCTTCGCACCGCGAAGGGCCGCAGATACTGGTACAA
TGAAGAAACGGGGGCGTCGCAGTACGACACTCCGAACTGCCTCAGGAAAT
ACCGCTGA
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