mRNA_E-siliculosus-1a_M_contig9.17027.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.17027.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.17027.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17027.1 vs. uniprot
Match: D7G1F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1F9_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 6.300e-45
Identity = 84/92 (91.30%), Postives = 86/92 (93.48%), Query Frame = 2 
Query:  425 LQPTSRRGGRTRRSGRLHAAREARLRVGPRYPGRNLHSAPNLPDVQALCGPQQACRAGVNEATSPTAGIQTQPAGLGQAHFGNAGAPWPARV 700
            L PTSRRGGRTRRSGRLHAAREARLRVGPRYPGRNLHSAPNLPDVQALCGPQQA RAGVNEATSP+AGIQT+ A LGQA FGNAGAPW ARV
Sbjct:   12 LLPTSRRGGRTRRSGRLHAAREARLRVGPRYPGRNLHSAPNLPDVQALCGPQQAYRAGVNEATSPSAGIQTESARLGQARFGNAGAPWRARV 103
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1F9_ECTSI6.300e-4591.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:1235336..1239684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size708
Model size1692
Exons4
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.17027.1prot_E-siliculosus-1a_M_contig9.17027.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 1236132..1238053 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936398.6810637-UTR-E-siliculosus-1a_M_contig9:1235335..12361311622936398.6810637-UTR-E-siliculosus-1a_M_contig9:1235335..1236131Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1235336..1236131 -
1696251060.2758985-UTR-E-siliculosus-1a_M_contig9:1235335..12361311696251060.2758985-UTR-E-siliculosus-1a_M_contig9:1235335..1236131Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1235336..1236131 -
1622936398.7418494-UTR-E-siliculosus-1a_M_contig9:1238053..12380681622936398.7418494-UTR-E-siliculosus-1a_M_contig9:1238053..1238068Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1238054..1238068 -
1696251060.327685-UTR-E-siliculosus-1a_M_contig9:1238053..12380681696251060.327685-UTR-E-siliculosus-1a_M_contig9:1238053..1238068Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1238054..1238068 -
1622936398.7591639-UTR-E-siliculosus-1a_M_contig9:1239511..12396841622936398.7591639-UTR-E-siliculosus-1a_M_contig9:1239511..1239684Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1239512..1239684 -
1696251060.3395042-UTR-E-siliculosus-1a_M_contig9:1239511..12396841696251060.3395042-UTR-E-siliculosus-1a_M_contig9:1239511..1239684Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1239512..1239684 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936398.700238-CDS-E-siliculosus-1a_M_contig9:1236131..12365421622936398.700238-CDS-E-siliculosus-1a_M_contig9:1236131..1236542Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1236132..1236542 -
1696251060.2854922-CDS-E-siliculosus-1a_M_contig9:1236131..12365421696251060.2854922-CDS-E-siliculosus-1a_M_contig9:1236131..1236542Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1236132..1236542 -
1622936398.7160506-CDS-E-siliculosus-1a_M_contig9:1236923..12371611622936398.7160506-CDS-E-siliculosus-1a_M_contig9:1236923..1237161Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1236924..1237161 -
1696251060.2959979-CDS-E-siliculosus-1a_M_contig9:1236923..12371611696251060.2959979-CDS-E-siliculosus-1a_M_contig9:1236923..1237161Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1236924..1237161 -
1622936398.7280169-CDS-E-siliculosus-1a_M_contig9:1237994..12380531622936398.7280169-CDS-E-siliculosus-1a_M_contig9:1237994..1238053Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1237995..1238053 -
1696251060.3097515-CDS-E-siliculosus-1a_M_contig9:1237994..12380531696251060.3097515-CDS-E-siliculosus-1a_M_contig9:1237994..1238053Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1237995..1238053 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.17027.1

>prot_E-siliculosus-1a_M_contig9.17027.1 ID=prot_E-siliculosus-1a_M_contig9.17027.1|Name=mRNA_E-siliculosus-1a_M_contig9.17027.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=236bp
MAAFNPTWTPGYDQSGRFCWYNKATGRMHHPSPLDSVDRCQEQQQQQRRR
QGQGLSMAPDEDAGLLCDVAHPNVPTGSYFSLPAAEVAEREEAGAFTQRE
KRGFAWDRGTQDETSTQPPTCRMYKPFADHNKPVALESTKPRRPQPAYKP
SQRAWAKPISETPVPRGRPGFDKSMPPPLPRPARGRPTLSQRGGRRMPAP
PAFPETHHRCRAGNARVKSPHRQAVGLWGEFHMSI*
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mRNA from alignment at E-siliculosus-1a_M_contig9:1235336..1239684-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.17027.1 ID=mRNA_E-siliculosus-1a_M_contig9.17027.1|Name=mRNA_E-siliculosus-1a_M_contig9.17027.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4349bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1235336..1239684- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ACCAACAGCAGTCAGCAGTTACAAATCTAAGACCACGTGCCGCGACAAGC
ACTGCTGGGGTATAACACATAACACTCCCAGGCTCTCTTCCGTGATCCCT
CTCAGCACACCCGCCATCCCTCTTCGATCAGTCTATCGGGGCACGAGGCA
AGCAGCAGCACCCGCACCATCAGGTAAGAGATGTGACACCAGCGCGCTGG
GGTGTGACGTAAAAGGGCAGCAACTACTACACTGCCTCGTCGCGAATTTG
CGTACTGTAGACTGTTCGCGTCCTCGTATGGTGCTGCTTCCGCATGCTAT
CTCCGAGGCACGTACGTTGTAGACTAGACTTAGGCAGTACTGCAGTAGTC
CACTACAGTCGAGCACAGCTTAACCAACCGTGGACAGCCAAGTGCAACGT
TCCCGGTGGTGGTGAAGGCCGTGACGCTGCGAGATTGAGCACCTTCGAGT
TACGCATGTCCGCAGACCATCACCGTCTGTTTAGAGGAAGATGGGAAGGT
GCATCCGTTTGTGTATTGTTCAAGCACGGGGACGAAAGAGGCATCGATGA
GAACATACACACCTGGCATTCGCCAGCACAGCAGTAAGACTGCACAGCAG
TATTGTACATGTAGAATCGATCCCTTTGAACCAATACCGCGAATCCAAGG
ATTTTTCGGTGTGGTTTGAACTTGCAATTTTCAAACAGCTACAACATAGT
CTACACACACGAGAGATATTAAGATCCCAGTGCGAGGACTCAGATGTGTG
CACCCCGTAAGAGTTTCAGTAAGAGTTGCAGGCACCAGCAAACATTGGAC
TCGTAGTCATGGCCCGGGTTACGTGATTGTGTCCGACCGCATTATTATTG
TTGCGGTCTCCTTTCGATCATTTAACTTTCTCTTCAGGCCTTCGCTGGTA
GACAATGGTAGGTGCGAATTCGCGGAGGGACTACACATCTGTACGGATTG
CTGCTGATGGATATTATTTGAGGCCACCACGCCAGTCAACAGAACGGTTT
ACGGCTCACGGCCATTTTTCAGTCCAGGCGCACCTCCGCCGACGAATGAA
TTAAACGTATATAGCTCTGGGCTGTGCATGCATGTCGCATCATCAGCAGC
AGCAGAGTGACTCGAAAGGAACATGCTTCGTCGGAACGCCCTGCTACCTT
GCACCAAGATGCAACATAGGGGTCTTTATGCCCAAAACAGCAGATGAGAC
CCTTGTTGCAAACAACAGTGTCCATGTGTCCATATATATACTGTAGTAGG
CGGATACCATGGTTGCTTCTTGTCTACATCCATAAATAAATCTATCTCGG
TAGGCCGCACGCGGAAGTCTCACGTGAAACTACGCTTTTAGGCGCAGCCT
TTGACTCAGGTCACTCACGCGGAGAACCCGAAGACAATTGCGCAAGAATG
ATCGTGCTCCCACCCTCAGCTGCAGGTCAACACCAGTTCGGATGCTGAGG
TGATCTCGTGAAAAGAAGCAGTCCTAACCACACATCACCCCCCTTCTCGC
GTCCCATTCTTGCACCTTACGCTACCCTTGCCCTGCTTATTTCCTCTTAC
GTATCCTTATTTCCTCTTATGCATCACGTGTGTGTGTGGCGTGCGCCGTT
TGTAATGTTATGGCAGAAAGTTACGGTGAGGATGGCGGCATTCAACCCAA
CATGGACTCCTGGGTACGACCAATCGGGTCGTTTTTGTTGGTGAGCGAAA
ACGTTGAGCCGGCCTGAGTCAGCGGGGTATCTGGCTTTCCCGGGGGGGTC
GGTCTGACTGTTGGTTCCTGTACGTGTTGAAAACTTGTTTCTTTGGGAAA
CAACGCCGTCCCTAGAAGAAAATTACAACCTCTCGGGTAGAAAATTGGGA
ACGTTATACTTGTTTTCTAGAACCGGCATTCCGCGCCGAACGACTATTTT
AGCGGGAACTCCTCCTCAAGAAGCCTTAGGTCGAGCAAGCCGTCGCCAAC
CGTCGCATTTTCGATGCAGAAGCGGGATGGACTTTCTTGCAGAGAGTCCA
AGACCCGCCGCTAGCGTGCCCTACGGCCTCGCTCTTCCTAAAACGTGCTA
CTGCGGGAGAAAATGTGCAGACCTACCCGATGTAGGTATAGATTGGTCAG
AATTATCACCCTGCGGCCCTCGCATCCATCAAAGGATGCCTTCTTTCGAT
CACGTGGCATCCACATGAGACCCAGCATCGGACGGAAGCATCCCGGCGAT
GTTTCAACGTTTTCTTGGGTCCACCGGCCGCCCATTCCCGTCTGTCGGTA
CTAGCCGCACGCCATTTATAGACACCGACAAGGCGGCCCCACCGAACCAA
CAACGCCCGCTTTCCAAAACGGAGGCCGATAGCCCCACAACACTTCAGGG
TGCCACAGCCGCGAAGGAGCAATCTTGTGGTGGTGTGTCGCCTTTCGAGC
ACGGCTGGGCGCTACGGATTAGGTTGCTTCGACGGCAGTGGCTTTATATA
TTCGAGTAGGTGATGCGTGGATTCAGCAAGAGCTTGTTATTTAGCCCTCC
TCTCGCCTACGCCGTCTTTGCAGGTACAACAAGGCCACCGGAAGAATGCA
CCACCCGTCTCCGCTCGATTCCGTCGATCGGTGTCAAGAGCAGCAGCAGC
AACAGCGGCGGCGGCAGGGGCAAGGGCTGTCGATGGCGCCCGATGAAGAC
GCCGGTCTTCTTTGCGACGTCGCACACCCGAACGTGCCGACGGGGTCGTA
CTTCAGCCTACCAGCCGCCGAGGTGGCCGAACGCGAAGAAGCGGGCGCCT
TCACGCAGCGAGTAAGTGTGGGGTGTGGTGCATCGTCCATGCAAGTCGAA
CCGCAGGTAGATGCAGCCACCCTGCTTTGCATACCATCAACGTAATCGGT
TGCGTTGTGGGTTGGGTGAGACTGCTCGTTGCTGAAGGTGGCCCACGATC
TGAAGAGATATTCATGAGGCAGAAGCATTTGTGGAAAACGACATGCGTGC
GTGGAGTGGCCTTTAGTACGTTCTCCGAGGTACCTTGTGGTCTTCTGTGG
ATGAGTTGCTATATGGGAGACCAGGCGGAAAGGTATTGCTTGTATCATTT
TTTTCTGAAGGCTCAACACGAAAATATCCCCCCAAATTCGTCTTCGCGCT
ACCGACGGCCTCTCGGTGCTTTTGCCACTGTTTCGATCGCAGGAGAAGCG
AGGCTTCGCGTGGGACCGAGGTACCCAGGACGAAACCTCCACTCAGCCCC
CAACCTGCCGGATGTACAAGCCCTTTGCGGACCACAACAAGCCTGTCGCG
CTGGAGTCAACGAAGCCACGTCGCCCACAGCCGGCATACAAACCCAGCCA
GCGGGCTTGGGCCAAGCCCATTTCGGAAACGCCGGTGCCCCGTGGCCGGC
CAGGGTTTGACAAGTCGATGCCCCCACCGCTGCCGAGGCCTGCTCGCGGC
AGGCCCACCTTGTCCCAGCGAGGGGGCAGGAGGATGCCGGCGCCACCGGC
GTTCCCGGAAACGCACCACCGTTGCCGGGCGGGGAACGCTCGGGTGAAAT
CGCCGCATCGACAGGCGGTCGGCCTTTGGGGAGAGTTTCACATGTCTATC
TAGCACGAGCACGTACGGGCAACGGCGTGTTGACATTTTTGGGACCTGCC
GCGGTGTGTTGTTAGCTGGGTAAGGTCGTTGAGTTTTTTCGGGTGGATTG
ATTGTCTGCAAAACCGACGAAATCAGTCGCCCGTGCGAGGGAACCGCTCG
CTGTACAGTTACCCGGGGGGCGTACCCGTCCCCTGGTATACGTTTATCGT
GATTACCACTATTGTTGTGTAGGGTGGCCGACAGCCCTCAGTTCGAATAT
ATTACAGTAGATACGGTGCAGAAGGGAGTTGGATGGCTCAGGGAGAGGTA
GGTACAACACTGGCTCCACCAGAGTTGCTCGAGGGGTGGAACCGGACGGG
GCGTAGAGAGTAAATGGCACAAGCAAAACAACGAGACGGAGATCTACATT
TATAATTGTGTAGTCTACAAGCAAACTCCCCGTTACGCGTGTGCCTGCTA
TGAATCGGATGTTGGACTCCACCGAATCCCCCCTCATTGTTTGCTGCTGC
TTTTAGCCTTTAGGCTCCTTCCAAGGGGGGGTTGTTTTTCTTCTCCACAG
TGACACCACTCGTCGCCGGGTGTCAACGCACGCGTGATGTGTTCGTTGAC
GTACTGTTGAGCTACTCGTTGTAAGCTGCCGTATGGATGCGCGTTTGCAA
ATGGTGTTGTAAGTATGGTTTGTTACGATGGAGAATAGATATGAAACTTG
CACTAGAAAATATGAAAGGCTGCTGGTGGGGTTTAGGTTCGAAGAACCAA
TAGGGTGTCGAGCTCAACTGCCGAATGAGCTTCATGAATCCACAACGCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:1235336..1239684-

>mRNA_E-siliculosus-1a_M_contig9.17027.1 ID=mRNA_E-siliculosus-1a_M_contig9.17027.1|Name=mRNA_E-siliculosus-1a_M_contig9.17027.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1416bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1235336..1239684- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCGGCATTCAACCCAACATGGACTCCTGGGTACGACCAATCGGGTCG
TTTTTGTTGATGGCGGCATTCAACCCAACATGGACTCCTGGGTACGACCA
ATCGGGTCGTTTTTGTTGGTACAACAAGGCCACCGGAAGAATGCACCACC
CGTCTCCGCTCGATTCCGTCGATCGGTGTCAAGAGCAGCAGCAGCAACAG
CGGCGGCGGCAGGGGCAAGGGCTGTCGATGGCGCCCGATGAAGACGCCGG
TCTTCTTTGCGACGTCGCACACCCGAACGTGCCGACGGGGTCGTACTTCA
GCCTACCAGCCGCCGAGGTGGCCGAACGCGAAGAAGCGGGCGCCTTCACG
CAGCGAGTACAACAAGGCCACCGGAAGAATGCACCACCCGTCTCCGCTCG
ATTCCGTCGATCGGTGTCAAGAGCAGCAGCAGCAACAGCGGCGGCGGCAG
GGGCAAGGGCTGTCGATGGCGCCCGATGAAGACGCCGGTCTTCTTTGCGA
CGTCGCACACCCGAACGTGCCGACGGGGTCGTACTTCAGCCTACCAGCCG
CCGAGGTGGCCGAACGCGAAGAAGCGGGCGCCTTCACGCAGCGAGAGAAG
CGAGGCTTCGCGTGGGACCGAGGTACCCAGGACGAAACCTCCACTCAGCC
CCCAACCTGCCGGATGTACAAGCCCTTTGCGGACCACAACAAGCCTGTCG
CGCTGGAGTCAACGAAGCCACGTCGCCCACAGCCGGCATACAAACCCAGC
CAGCGGGCTTGGGCCAAGCCCATTTCGGAAACGCCGGTGCCCCGTGGCCG
GCCAGGGTTTGACAAGTCGATGCCCCCACCGCTGCCGAGGCCTGCTCGCG
GCAGGCCCACCTTGTCCCAGCGAGGGGGCAGGAGGATGCCGGCGCCACCG
GCGTTCCCGGAAACGCACCACCGTTGCCGGGCGGGGAACGCTCGGGTGAA
ATCGCCGCATCGACAGGCGGTCGGCCTTTGGGGAGAGTTTCACATGTCTA
TCTAGGAGAAGCGAGGCTTCGCGTGGGACCGAGGTACCCAGGACGAAACC
TCCACTCAGCCCCCAACCTGCCGGATGTACAAGCCCTTTGCGGACCACAA
CAAGCCTGTCGCGCTGGAGTCAACGAAGCCACGTCGCCCACAGCCGGCAT
ACAAACCCAGCCAGCGGGCTTGGGCCAAGCCCATTTCGGAAACGCCGGTG
CCCCGTGGCCGGCCAGGGTTTGACAAGTCGATGCCCCCACCGCTGCCGAG
GCCTGCTCGCGGCAGGCCCACCTTGTCCCAGCGAGGGGGCAGGAGGATGC
CGGCGCCACCGGCGTTCCCGGAAACGCACCACCGTTGCCGGGCGGGGAAC
GCTCGGGTGAAATCGCCGCATCGACAGGCGGTCGGCCTTTGGGGAGAGTT
TCACATGTCTATCTAG
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