mRNA_E-siliculosus-1a_M_contig9.17022.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.17022.1 vs. uniprot
Match: D7G1G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G4_ECTSI) HSP 1 Score: 1634 bits (4231), Expect = 0.000e+0 Identity = 1105/1603 (68.93%), Postives = 1147/1603 (71.55%), Query Frame = 1
Query: 37 MPRATRIPVQVEGVGLARRQQQGKPASAALDDAAAQQRLRRLRRKRLAEKVVAHWKDFAREGIAEARARAHASAAPRRRGLTRWRAGATALRSARHRRTADAGRRRFLAESRGFAAWLAATRAARDRXXXXXXXXXXXXXXXX---ERVLTKMARSSLHRWAAWAAGRRARRDAGNEAYVHESSLLPGKLRRAIRRWRQHCANRQQFRRILTDVATVPRPQPAIPRRGALPPLPARTPXXXXXXXXXXXXXXSEAFATAGRAQAVLFLRRWRRAATHRRRTRASAGLARRFRDHVLLLRHHEHWKAFVAGKRATAELEAAAARLGRRARARRALLGLSRAAEASAEERDRVRPVLQEAFSAWDKVYTDGLRKRESREEEARERDRQATRRRVLRAWLWRTRNFVDAKGQVVEGERHRREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVAAGRLRRSFARWQEFHGSSLVATVTRLRAEGHARRIVLGKFWAAWVAVRDLQKRRTAFRAKILARRQVS----LQREAFFALVSVAEAGRREREKVSAALLLWKLHTQGKAFAALAAHRLRRRWKQDRARRAVGWRRERLIKDGALRWAATADALSASRISSAAFREGNRAARRWEAAGRCARHWRRVAAARGMERRARDKLPRTSVAPMPGFPGDVLGDVARGCVGVRDGEVIAESGGIRFPSGGVGSRARRPGVATGIGKTSGSGSRAGGSGKENVDEDGSSRGTAAVAPDPARGAFPFSTNQRNGSIIASNQPGPAYRSGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXASASALARRHAGRASSLGMAEGVGVDEENVRLSSGGPVEEGXXXXXXXXXXXXXXXXXXXXKRRSSPLSVRRSSGKXXXXXXXXEHRTSSPPMTVGNLTQAACPLPSAASEPPWGRTQPVSGVGAGVDGGSPGXXXXXXXXXXXXXXXPAPRRPLELLLDESSRFAATASENRGQRGGGVAPPLSTWVVDEMNRLFGAGGSVNNGLAVAGGGSSAVIGDDRGRRERAAMFRSAGYLDCGQPGQVACLPGRDGGGRSKDSDGQLFVPRKSMFWGAGRGETAAASGPGSAPFRRAASPSVGQWERRAGTRGNQQQEGLLQHPTEVSSLPATARPPQPAPSQEDTTCTPGGGARGVHGAPTAASCTCQCSSPAPPSCVRPTTPQFDSEIMPLPVDVESPLGAASAQPAGEAGAGGAFEGDYSSFSEEAARTAGXXXXXXXGGSGVRNGREVENTRIIVDDSNAVAAAAAAVSAPQAIDASPSSESITDSAVASSSVAQLQSPTSVLGFDGAATAYETEEVDLEARVAKAERRLRALQERARQRRRDKRELAALHQALAEQEARTTHSGVGSRGVDGGEMGGGVDCPLDG--KPTNALLSLASDSRGNNSAVGRGDLPLTRLDNSNHSAVEPGNEEGPTPASIGAPCSLDVTTPAHTALLSLDGNSSEHDTATDASSRRALLVRMGMVRARLDSGGKVRGEGGWLRPVAEGLRREVEELAKSGAAERSRSGSGGP 4818
MPRATR PVQVEGVGLARRQQQG+ A RLRRLRRKRLAEKVVAHWKDFAREGIAEARARAHASAAPRRRGLTRWRAGATALRS RHRRTADAGR RFLAESRGFA WLAATRA RDRXXXXXXXXXXXXXXXX ERVLTK+ARSSL RWAAWAAGRRARRDAGNEA VH SSLLPGKLRRAIRRWRQHCANRQQFRRILTDVATVPRP PA PRRGA P P R PXX XXXXXXXXX +EAFATAGRA+A FLRRWRRAA TRASAGLARRFRDHVLLLRHHEHWKAFVAGKRA AELEAAAARLGRRAR RRALLGLSRAAEASAEERDRVRPVL+EAFS WDK DGLRKRE REE VLRAWL RTRN VDA+GQVVEGE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+ AAG R A+ + +R + R V F R + R + AR S L + V+VAEAGRREREKVSAALLLWKLHTQGKAFAALAAHRLRRRWKQDRARRAVGWRRERLIKDGALRWAATADALSASRISS AFREGNRAARRWEAAGRCARHWRRVAAARGM+RRARD+ PRTSVAPMPGFPGDV GDVARGCV VRDGE+IAESGG+RFP GG GSRARRP VAT G+TS SL MA GVGVDEENVRLSSGGPVEEG K R SPLSVR SG+ XXXXX HRTS PPMTVGNLTQAACPLP+AASEPPWGRTQP SGV AGVDGGSPGXXXXXXXXXXXX PAPRRPLELLLDE+SRFAATASENRGQRGGGVAPPLSTWVVDEMNRLFGAGGSVNNGLAVAGGGSSAV+ DRGRRERAAMFRSAG++DCGQ GQVACLPGRDGGGRSKDSDGQLF P KS FWG+GRGE A+ASGPGSAPFRRAASPSVGQWERRAGTRGNQQQ GLLQHPTEVSSLPATARPPQ G RGV+GAPTAASCTCQC+SPAPPSC RPTTPQFD E+MPLPVDV SPL AA A ESI DS VASSS AQ Q PTSVL FDGAATAYETEE DLEARVAKAERRLRALQERARQR RDKRELAALHQALAEQEARTTH GVGSRG DGGEMGGG+DCP+DG KP+ ALLS A+D+RGNN+AVG+GD P T + NS+HSAVEPGNEEGPTPASIGAP SLDVTTPA TALLSLDGNSSEH+TATD SSRRALLVRMGM+RARLDSGGKVR EGGWLRPVAE LRREVEELAKSGAA RSRSGSGGP
Sbjct: 1 MPRATRKPVQVEGVGLARRQQQGESAXXXXXXXXXXXRLRRLRRKRLAEKVVAHWKDFAREGIAEARARAHASAAPRRRGLTRWRAGATALRSTRHRRTADAGRWRFLAESRGFATWLAATRATRDRXXXXXXXXXXXXXXXXXXAERVLTKIARSSLQRWAAWAAGRRARRDAGNEACVHASSLLPGKLRRAIRRWRQHCANRQQFRRILTDVATVPRPPPAFPRRGAPPTFPCRAPXXTPXXXXXXXXX-AEAFATAGRARAASFLRRWRRAAXXXXXTRASAGLARRFRDHVLLLRHHEHWKAFVAGKRAAAELEAAAARLGRRARTRRALLGLSRAAEASAEERDRVRPVLREAFSKWDKACADGLRKRECREEXXXXXXXXXXXX-VLRAWLCRTRNSVDARGQVVEGE-------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAGMASRRSAK-------RVAMDKDHIRYDNRRRGKVAALFRPLARVSRVVPGRHGYPSPRGRARPPESSGKVLGGLGGGSRVAVAEAGRREREKVSAALLLWKLHTQGKAFAALAAHRLRRRWKQDRARRAVGWRRERLIKDGALRWAATADALSASRISSTAFREGNRAARRWEAAGRCARHWRRVAAARGMQRRARDQFPRTSVAPMPGFPGDVPGDVARGCVAVRDGEIIAESGGVRFPRGGGGSRARRPDVATATGRTS-------------------------------------------------------------------------------------------------------SLRMAAGVGVDEENVRLSSGGPVEEGGAAAPGEEFTPVSGGPAREEKGRLSPLSVRGLSGQGEEXXXXXXHRTSPPPMTVGNLTQAACPLPAAASEPPWGRTQPGSGVDAGVDGGSPGXXXXXXXXXXXXRRRPAPRRPLELLLDETSRFAATASENRGQRGGGVAPPLSTWVVDEMNRLFGAGGSVNNGLAVAGGGSSAVVDGDRGRRERAAMFRSAGHVDCGQSGQVACLPGRDGGGRSKDSDGQLFAPIKSTFWGSGRGEMASASGPGSAPFRRAASPSVGQWERRAGTRGNQQQGGLLQHPTEVSSLPATARPPQXXXXXXXXXXXXXXGVRGVYGAPTAASCTCQCNSPAPPSCARPTTPQFDGEMMPLPVDVGSPLAAAPALXXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------ESIADSTVASSSAAQQQWPTSVLSFDGAATAYETEEADLEARVAKAERRLRALQERARQRHRDKRELAALHQALAEQEARTTHDGVGSRGNDGGEMGGGIDCPVDGNRKPSKALLSSAADNRGNNNAVGQGDFPST-ISNSSHSAVEPGNEEGPTPASIGAPHSLDVTTPAQTALLSLDGNSSEHETATDTSSRRALLVRMGMIRARLDSGGKVRAEGGWLRPVAESLRREVEELAKSGAAGRSRSGSGGP 1379
BLAST of mRNA_E-siliculosus-1a_M_contig9.17022.1 vs. uniprot
Match: A0A6H5L2X6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2X6_9PHAE) HSP 1 Score: 971 bits (2511), Expect = 0.000e+0 Identity = 664/1072 (61.94%), Postives = 688/1072 (64.18%), Query Frame = 1
Query: 283 RWRAGATALRSARHRRTADAGRRRFLAESRGFAAWLAATRAARDRXXXXXXXXXXXXXXXX------ERVLTKMARSSLHRWAAWAAGRRARRDAGNE-------------------------------------------------------------------------------------------------------------------AYVHESSLLPGKLRRAIRRWRQHCANRQQFRRILTDVATVPRPQPAIPRRGALPPLPARTPXXXXXXXXXXXXXXSEAFATAGRAQAVLFLRRWRRAATHRRRT----------------RASAGLARRFRDHVLLLRHHEHWKAFVAGKRATAELEAAAARLGRRARARRALLGLSRAAEASAEERDRVRPVLQEAFSAWDKVYTDGLRKRESREEEARERDRQATRRRVLRAWLWRTRNFVDAKGQVVEGERHRREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVAAGRLRRSFARWQEFHGSSLVATVTRLRAEGHARRIVLGKFWAAWVAVRDLQKRRTAFRAKILARRQVSLQREAFFALVSVAEAGRREREKVSAALLLWKLHTQGKAFAALAAHRLRRRWKQDRARRAVGWRRERLIKDGALRWAATADALSASRISSAAFREGNRAARRWEAAGRCARHWRRVAAARGMERRARDKLPRTSVAPMPGFPGDVLGDVARGCVGVRDGEVIAESGGIRFPSGGVGSRARRPGVATGIGKTSGSGSRAGGSGKENVDEDGSSRGTAAVAPDPARGAFPFSTNQRNGS----------IIASNQPGPAYRSGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXASASALARRHAGRASSLGMAEGVGVDEENVRLSSGGPVEEGXXXXXXXXXXXXXXXXXXXX---------KRRSSPLSVRRSSGKXXXXXXXXEHRTSSPPMTVGNLTQAACPLPSAASEPPWGRTQPVSGVGAGVDGGSPG 3030
RWRA ATALRSAR R TADAGRRRFLAESRGFAAWLAATRAARDRXXXXXXXXXXXXXXXX ERVLTKM+RSSL RWA WA+ RR RRDAGNE AYVH SSLLPGKLRRAIR WRQ+CANRQQ RRILTDVA VPRP AIPRRGA PPLPARTPXXXXXXXXXX EAFATAGRAQA FLRRWRRAAT RR RASAGLARRFRDHVLLLRHHEHWKAFVAGKRA AELEAAAARLGRRARARRALLGL AAEASAEERDRVRPVL+EAFSAWDK DGL KRESR++EAR+RDRQA ++ W +R D+ VVEGERHRRE IVAAGRLRRSFARWQEFHGSS VATVTRLRAEGHARR VLGKFWAAWVAV +LQKRRTAFRAK++ARRQ+SLQREAFF+LVSVAEAGRR+REKVSAALLLWKLHTQGKAFAALA HRLRR ARRAVGWRRERLIKDGALRWAATADALSASRISSAAFREGNRAARRWEAAGRCARHWRRVAAARGMERRARD+LPRTSVAPMPGFPGDV GDVARGCVGVRDGE IA SGG+RFP GG GSRARRPGVAT GKTSGSGSRAGGSGKENVDE GSSRGTAA APDPARGAFPFSTNQRNG+ I A NQPGPAYRSGN ASASA ARRH+GR SSL +A GVGVDEENVR S P EEG XXXXXXXXXXX K RSSPLSVRRS G EHR SSPPMTVGN+TQAAC LP+AASEPPWGRTQP SGV A VDGGSPG
Sbjct: 2 RWRARATALRSARRRGTADAGRRRFLAESRGFAAWLAATRAARDRXXXXXXXXXXXXXXXXXXXXXXERVLTKMSRSSLQRWAGWASARRVRRDAGNEVVASXXXXXXXXXXXXXXXGIETAALRAWASGRLYSGLAGLRRNALKHRLEVFLLDRGSAARRRLLGLRGLGALEAAVLRAAWRRDVAAEALAGRARAALGRWGWRASVLRARRAAYVHASSLLPGKLRRAIRHWRQYCANRQQLRRILTDVARVPRPLSAIPRRGAPPPLPARTPXXXXXXXXXXAPTMVEAFATAGRAQAASFLRRWRRAATRRRXXXXXXXXXXXXXXXXXXRASAGLARRFRDHVLLLRHHEHWKAFVAGKRAAAELEAAAARLGRRARARRALLGLWIAAEASAEERDRVRPVLREAFSAWDKACADGLSKRESRDDEARDRDRQACSTVLVEVWEG-SRGLSDSSS-VVEGERHRRERCLRRAVRGWARAGLESRRRRGQATASRKHVDRRLLASGVRVWRVAAAAMASRRYAKRVAMDKAARKAVFRARITSATT--------------------IVAAGRLRRSFARWQEFHGSSQVATVTRLRAEGHARRKVLGKFWAAWVAVGELQKRRTAFRAKVMARRQLSLQREAFFSLVSVAEAGRRQREKVSAALLLWKLHTQGKAFAALATHRLRR------ARRAVGWRRERLIKDGALRWAATADALSASRISSAAFREGNRAARRWEAAGRCARHWRRVAAARGMERRARDQLPRTSVAPMPGFPGDVRGDVARGCVGVRDGEGIAGSGGLRFPRGGGGSRARRPGVATATGKTSGSGSRAGGSGKENVDEHGSSRGTAAAAPDPARGAFPFSTNQRNGAVAQAAGTVNTITAENQPGPAYRSGNGGSPATQTFSAGAASWLPARAGPSYGRWASASAPARRHSGRTSSLRIAAGVGVDEENVRFCSREPGEEGRVAAXXXXXXXXXXXKGFTAESGGPAPEEKGRSSPLSVRRSFGNGEEAEEGNEHRPSSPPMTVGNVTQAACLLPAAASEPPWGRTQPGSGVDADVDGGSPG 1045
BLAST of mRNA_E-siliculosus-1a_M_contig9.17022.1 vs. uniprot
Match: A0A6H5L1R8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R8_9PHAE) HSP 1 Score: 738 bits (1906), Expect = 9.960e-249 Identity = 435/549 (79.23%), Postives = 456/549 (83.06%), Query Frame = 1
Query: 3205 MNRLFGAGGSVNNGLAVAGGGSSAVIGDDRGRRERAAMFRSAGYLDCGQPGQVACLPGRDGGGRSKDSDGQLFVPRKSMFWGAGRGETAAASGPGSAPFRRAASPSVGQ-WERRAGTRGNQQQEGLLQHPTEVSSLPATARPPQPAPSQEDTTCTPGGGARGVHGAPTAASCTCQCSSPAPPSCVRPTTPQFDSEIMPLPVDVESPLGAASAQPAGEAGAGGAFEGDYS-SFSEEAARTAGXXXXXXXGGSGVRNGREVENTRIIVDDSNAVAAAAAA--------VSAPQAIDASPSS-ESITDSAVASSSVAQLQSPTSVLGFDGAATAYETEEVDLEARVAKAERRLRALQERARQRRRDKRELAALHQALAEQEARTTHSGVGSRGVDGGEMGGGVDCPLDGKPTNALLSLASDSRGNNSAVGRGDLPLTRLDNSNHSAVEPGNEEGPTPASIGAPCSLDVTTPAHTALLSLDGNSSEHDTATDASSRRALLVRMGMVRARLDSGGKVRGEGGWLRPVAEGLRREVEELAKSGAAERSRSGSGGP 4818
MNRLFGAGGSVNNGLAVAGGGSSAVIG DRGRRERAAMFRSAG++DCGQP QVACLPGRDG GRS DS G LF PRKS F GA RGE AAASG GSAP AASPSVGQ WER AGTRGNQQQEGLLQHPTEV LPATARP QPAPSQE TT TPGGGARGVHGAPTAASCTCQ SS +PPSCVRPTTP+FDSEIMPLPV V SPL AASA PAGEAGAGGAFEGD SFSEEAARTA G GV+NGREV+NTRI+VD +NA A +SAPQA +SPSS ESI DSAV S SVAQ QSPT+ GFD AAT YETEE DLEARVAKAERRLRALQERARQRRRDKRELAALHQALA+QEARTTHSG+G G DGGEMG GVD P+DGKP+ ALLS A+D+RGN +AVG+G P T DNS+ SAV+PGNEEGPTP SIGAP SLDVTTPA TALLSL G SEHDTATD SSRRALLVRMGMVRARLDSGGKVR EGGWLRPVAE LRREVEELAKSGAA RSR GSGGP
Sbjct: 1 MNRLFGAGGSVNNGLAVAGGGSSAVIGGDRGRRERAAMFRSAGHVDCGQPRQVACLPGRDGNGRSTDSGGHLFAPRKSTFSGASRGEMAAASGQGSAPVISAASPSVGQQWERSAGTRGNQQQEGLLQHPTEVPPLPATARPTQPAPSQEHTTSTPGGGARGVHGAPTAASCTCQSSSSSPPSCVRPTTPRFDSEIMPLPVYVGSPLPAASALPAGEAGAGGAFEGDSCPSFSEEAARTAVAAAAARTGRPGVQNGREVDNTRIVVD-ANAAAXXXXXXXXXXXXXISAPQATHSSPSSPESIADSAVGSGSVAQQQSPTAASGFDRAATPYETEEADLEARVAKAERRLRALQERARQRRRDKRELAALHQALAKQEARTTHSGIGGSGNDGGEMGAGVDRPVDGKPSKALLSSAADNRGNKNAVGQGGFPSTISDNSSISAVDPGNEEGPTPTSIGAPRSLDVTTPAQTALLSL-GGCSEHDTATDTSSRRALLVRMGMVRARLDSGGKVRAEGGWLRPVAESLRREVEELAKSGAAGRSRGGSGGP 547 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig9.17022.1 >prot_E-siliculosus-1a_M_contig9.17022.1 ID=prot_E-siliculosus-1a_M_contig9.17022.1|Name=mRNA_E-siliculosus-1a_M_contig9.17022.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1595bp MPRATRIPVQVEGVGLARRQQQGKPASAALDDAAAQQRLRRLRRKRLAEKback to top mRNA from alignment at E-siliculosus-1a_M_contig9:1168251..1181716- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig9.17022.1 ID=mRNA_E-siliculosus-1a_M_contig9.17022.1|Name=mRNA_E-siliculosus-1a_M_contig9.17022.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=13466bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1168251..1181716- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:1168251..1181716- >mRNA_E-siliculosus-1a_M_contig9.17022.1 ID=mRNA_E-siliculosus-1a_M_contig9.17022.1|Name=mRNA_E-siliculosus-1a_M_contig9.17022.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=9570bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1168251..1181716- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |