mRNA_E-siliculosus-1a_M_contig9.17018.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.17018.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.17018.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17018.1 vs. uniprot
Match: A0A835ZFS4_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFS4_9STRA)

HSP 1 Score: 230 bits (587), Expect = 1.130e-68
Identity = 123/225 (54.67%), Postives = 155/225 (68.89%), Query Frame = 2 
Query:   29 MSLPSLDHFNFREYDHFYEPAEDTYLLIDALQADADLLRCSVRPTVCLEIGPGSGLVTAALSELLREEKEKTPXXXXXXXXXRPLFLAAEINPRAAAACVLTAKANNVE-PFEVVCCDLDICMRDRLRGQVDVLLFNPPYVPTPPEEVGSKDIAAAWAGGERGREVIDRFLPAVKELLSPGGFFYMVAVEDNNPTEIVSVMRGYGVHAEVVLRRRAKNEALCVIK 700
            M+LPSL+HF++++YD FYEP++DTYLL+DAL AD   L  +V+P+VCLEIGPGSG +T AL+ LL EE+  +            L LA +IN  AA        AN+V  P EVV  DL   +   L G+VDVL+FNPPYVPTPPEEVG++DIAAAWAGG RGREVIDR LP    LLS  G FY+V V++N P EI+SVM+G G+  +    RRAKNE L ++K
Sbjct:    1 MALPSLEHFSYKDYDTFYEPSDDTYLLLDALDADRRFLADTVQPSVCLEIGPGSGAITTALATLLAEERGFS------------LMLAVDINASAATXXXXXXAANSVTLPVEVVQGDLANALERGLSGRVDVLVFNPPYVPTPPEEVGTQDIAAAWAGGRRGREVIDRVLPQAAALLSNKGVFYLVVVQENRPQEIMSVMKGLGLSGQTACTRRAKNELLSILK 213
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17018.1 vs. uniprot
Match: A0A7S2RT88_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RT88_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.030e-56
Identity = 114/233 (48.93%), Postives = 140/233 (60.09%), Query Frame = 2 
Query:   23 LAMSLPSLDHFNFREYDHFYEPAEDTYLLIDALQADADLLRCSVRPTVCLEIGPGSGLVTAALSELLREEKEKTPXXXXXXXXXRPLFLAAEINPRAAAACVLTAKANNVEPFEVVCCDLDICMRDRLRGQVDVLLFNPPYVPTPPEEVGSKDIAAAWAGGERGREVIDRFLPAVKELLSPGGFFYMVAVEDNNPTEIVSVMRGYGVHAEVVLRRRAKNEALCVIKMRHQE*T 721
            +A  LPSLDH  F +Y H YEPAEDTYL +DAL  D   L+  + P V LEIG G+G+V+  LS  L                 R    A ++N RAA     TA  N VE  EVV  DL   +  RL G+VDVLLFNPPYVPTPPEEVGS+ I A+WAGG  GREVIDRFLP V +LLS  G  Y+V V++N P ++ S++   G+    VL +RA+NE L V +   QE T
Sbjct:    3 MATPLPSLDHVLFTDYHHVYEPAEDTYLFVDALTQDTAFLK-ELEPLVSLEIGAGTGVVSTHLSRALGR---------------RMAHFATDVNTRAAEISKATATENGVESMEVVVGDLATGLHHRLSGKVDVLLFNPPYVPTPPEEVGSQGIEASWAGGIDGREVIDRFLPLVPDLLSDKGQLYLVLVQENRPDDVCSILGKAGLAGSCVLEKRARNELLSVWRFGRQEVT 219
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.17018.1 vs. uniprot
Match: C3ZRS9_BRAFL (MTS domain-containing protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZRS9_BRAFL)

HSP 1 Score: 194 bits (493), Expect = 7.480e-55
Identity = 104/221 (47.06%), Postives = 135/221 (61.09%), Query Frame = 2 
Query:   38 PSLDHFNFREYDHFYEPAEDTYLLIDALQADADLLRCSVRPTVCLEIGPGSGLVTAALSELLREEKEKTPXXXXXXXXXRPLFLAAEINPRAAAACVLTAKANNVEPFEVVCCDLDICMRDRLRGQVDVLLFNPPYVPTPPEEVGSKDIAAAWAGGERGREVIDRFLPAVKELLSPGGFFYMVAVEDNNPTEIVSVMRGYGVHAEVVLRRRAKNEALCVIK 700
            P L H    +YDH YEPAEDT+LL+DAL+ DADLLR S+ P++CLE+G GSG V   L  +L                 RP +L  ++NPRAA     T   NN+    V+  DL   +  RL  +VDV++FNPPYV TPPEEVGS  I A+WAGG +GREV+DRF P V  LLS  G FY+V +E N+P EI   MR +G   + V+ R+A  E L +++
Sbjct:    8 PDLSHLTAEDYDHVYEPAEDTFLLMDALEKDADLLR-SIAPSICLEVGCGSGAVITFLGSILGS---------------RPHYLCTDLNPRAAECAARTGTQNNISVHPVLT-DLVSALLPRLENKVDVMIFNPPYVVTPPEEVGSHGIEASWAGGVKGREVMDRFFPLVPRLLSDNGVFYLVTIEQNDPEEIGCKMREFGFTMDKVMSRKAGPEKLAILR 211
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.17018.1 vs. uniprot
Match: A0A167P268_PHYB8 (MTS domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167P268_PHYB8)

HSP 1 Score: 191 bits (485), Expect = 1.000e-53
Identity = 102/226 (45.13%), Postives = 141/226 (62.39%), Query Frame = 2 
Query:   38 PSLDHFNFREYDHFYEPAEDTYLLIDALQADADLLRCSVRPTVCLEIGPGSGLVTAALSELLREEKEKTPXXXXXXXXXRPLFLAAEINPRAAAACVLTAKANNVEPFEVVCCDLDICMRDRLRGQVDVLLFNPPYVPTPPEEVGSKDIAAAWAGGERGREVIDRFLPAVKELLSPGGFFYMVAVEDNNPTEIVSVMRGYGVHAEVVLRRRAKNEALCVIKMRHQE 715
            P L H   +++D  YEPAEDT+LL+DAL+ DA  L+ S    +CLEIG GSG VTA L++++ ++                ++L  +INP A  A   TAK N V   E +   L   +  RL   VDVLLFNPPY  TPPEEVGS  I AAWAGG  GR+VID  LP V++LLSP G FY++ + +N+P E+V +M+ Y + AE+V+ RRA  E   ++K++H++
Sbjct:    5 PDLSHLTTKDFDRLYEPAEDTFLLLDALEEDATWLQ-SNNSRLCLEIGSGSGCVTAMLAKIIGKQNA--------------VYLTTDINPYACKATQQTAKHNGVSLVETLQTSLVGSLLPRLTHSVDVLLFNPPYAVTPPEEVGSNGIEAAWAGGIDGRQVIDALLPFVEKLLSPNGVFYLLLINENHPLEVVDIMKSYHMRAEIVMERRAGRERQYILKIQHEQ 215
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17018.1 vs. uniprot
Match: A0A3B4BHK5_9GOBI (N-6 adenine-specific DNA methyltransferase 1 n=2 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4BHK5_9GOBI)

HSP 1 Score: 191 bits (484), Expect = 1.490e-53
Identity = 104/226 (46.02%), Postives = 142/226 (62.83%), Query Frame = 2 
Query:   38 PSLDHFNFREYDHFYEPAEDTYLLIDALQADADLLRCSVRPTVCLEIGPGSGLVTAALSELLREEKEKTPXXXXXXXXXRPLFLAAEINPRAAAACVLTAKANNVEPFEVVCCDLDICMRDRLRGQVDVLLFNPPYVPTPPEEVGSKDIAAAWAGGERGREVIDRFLPAVKELLSPGGFFYMVAVEDNNPTEIVSVMRGYGVHAEVVLRRRAKNEALCVIKMRHQE 715
            P   H    E+   YEPAED++LLIDAL+ DA++L+    P+VCLE+G GSG+V+A L+ +L                   L++  ++N  AA     T+  NN+   + V  DL   +  RL+G+VDVLLFNPPYV TP EEVGS  I AAWAGGERGREV+DRFLP V +LLS  G FY++ + +NNP EI+SV+   G+  ++ L+ RA NE L V++ R +E
Sbjct:    8 PFYSHTGRGEFSEVYEPAEDSFLLIDALEKDAEMLK-ERSPSVCLEVGSGSGVVSAFLASVL---------------GPAALYICTDVNTAAAKCTAKTSSCNNIS-LQPVITDLVDGLLPRLKGKVDVLLFNPPYVVTPSEEVGSSGIEAAWAGGERGREVVDRFLPVVSKLLSKNGLFYLITIVENNPDEIMSVLGECGLSGDICLKTRAGNERLSVLRFRWRE 216
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17018.1 vs. uniprot
Match: A0A667XGW5_9TELE (N-6 adenine-specific DNA methyltransferase 1 n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667XGW5_9TELE)

HSP 1 Score: 190 bits (483), Expect = 2.020e-53
Identity = 104/226 (46.02%), Postives = 138/226 (61.06%), Query Frame = 2 
Query:   38 PSLDHFNFREYDHFYEPAEDTYLLIDALQADADLLRCSVRPTVCLEIGPGSGLVTAALSELLREEKEKTPXXXXXXXXXRPLFLAAEINPRAAAACVLTAKANNVEPFEVVCCDLDICMRDRLRGQVDVLLFNPPYVPTPPEEVGSKDIAAAWAGGERGREVIDRFLPAVKELLSPGGFFYMVAVEDNNPTEIVSVMRGYGVHAEVVLRRRAKNEALCVIKMRHQE 715
            P   H    ++   YEPAED++LLIDAL+ DAD L+  +RP VC+E+G GSG+V+A L+ L+                     L  ++NP AA     TA  N+V   + V  DL  C+  RL G+VDVLLFNPPYV TP EEVGS+ I AAWAGG RGREV DRFLP V +LLS GG FY++ + +N+P EI+S++  +G+     L RRA NE L V++    +
Sbjct:    8 PIYSHAGRGDFQDVYEPAEDSFLLIDALEQDADRLQ-QLRPAVCVEVGSGSGVVSAFLASLIGRSA---------------FHLCTDVNPAAARCTAQTASCNSVS-LQPVITDLVECLLPRLCGKVDVLLFNPPYVVTPSEEVGSRGIEAAWAGGRRGREVTDRFLPVVSQLLSTGGLFYLITIAENDPEEIISLLADFGLKGVSCLSRRAGNERLSVLRFHRTQ 216
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17018.1 vs. uniprot
Match: A0A673BHD3_9TELE (N-6 adenine-specific DNA methyltransferase 1 n=2 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673BHD3_9TELE)

HSP 1 Score: 189 bits (480), Expect = 5.700e-53
Identity = 103/221 (46.61%), Postives = 137/221 (61.99%), Query Frame = 2 
Query:   38 PSLDHFNFREYDHFYEPAEDTYLLIDALQADADLLRCSVRPTVCLEIGPGSGLVTAALSELLREEKEKTPXXXXXXXXXRPLFLAAEINPRAAAACVLTAKANNVEPFEVVCCDLDICMRDRLRGQVDVLLFNPPYVPTPPEEVGSKDIAAAWAGGERGREVIDRFLPAVKELLSPGGFFYMVAVEDNNPTEIVSVMRGYGVHAEVVLRRRAKNEALCVIK 700
            P   H    E+   YEPAED++LLIDAL+ DA++L+    P VCLE+G GSG+V+A L+ ++                   L++  ++NP AA    +TA  N V   + V  DL  C+   L G+VDVLLFNPPYV TP EEVGSK I AAWAGG+RGREV DRFLP V +LLS  G FY+V + +NNP EI+ +++  G+  E  L  RA NE LC+++
Sbjct:    8 PLYSHAGRGEFSEVYEPAEDSFLLIDALEKDAEMLQLK-SPCVCLEVGSGSGVVSAFLASVVGPSA---------------LYICTDVNPAAAQCTAMTASCNGVS-LQPVLTDLVECLLPWLSGKVDVLLFNPPYVVTPSEEVGSKGIEAAWAGGKRGREVTDRFLPLVAQLLSKKGLFYLVTIAENNPEEIIRLLQECGLRGESCLSTRAGNERLCILR 211
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17018.1 vs. uniprot
Match: UPI000A1C2B6B (hemK methyltransferase family member 2 n=1 Tax=Boleophthalmus pectinirostris TaxID=150288 RepID=UPI000A1C2B6B)

HSP 1 Score: 189 bits (480), Expect = 5.700e-53
Identity = 105/233 (45.06%), Postives = 146/233 (62.66%), Query Frame = 2 
Query:   23 LAMSLPS--LDHFNFREYDHFYEPAEDTYLLIDALQADADLLRCSVRPTVCLEIGPGSGLVTAALSELLREEKEKTPXXXXXXXXXRPLFLAAEINPRAAAACVLTAKANNVEPFEVVCCDLDICMRDRLRGQVDVLLFNPPYVPTPPEEVGSKDIAAAWAGGERGREVIDRFLPAVKELLSPGGFFYMVAVEDNNPTEIVSVMRGYGVHAEVVLRRRAKNEALCVIKMRHQE 715
            +A+S P+    H    E+   YEPAED++LLIDAL+ DA++L+    P+VCLE+G GSG+V+A L+ +L                   L++  ++N  AA     T+  N+V   + V  +L  C+  RL G+VD+LLFNPPYV TP EEVGS  I AAWAGGERGR+V+DRFLP V +LLS  G FY++ + +NNP EI+S++   G+  EV L  RA NE L V++ R +E
Sbjct:    1 MAVSYPTPIYSHAGRGEFSEVYEPAEDSFLLIDALEKDAEMLK-ERSPSVCLEVGSGSGVVSAFLASVLGSAA---------------LYICTDVNAAAAKCTAKTSTCNSVS-LQPVITNLVDCLLPRLNGKVDILLFNPPYVVTPSEEVGSSGIEAAWAGGERGRDVVDRFLPVVSKLLSKKGLFYLITIIENNPDEIISILGKCGLSGEVCLSTRAGNERLSVLRFRWRE 216
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.17018.1 vs. uniprot
Match: UPI00145501E1 (methyltransferase N6AMT1-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145501E1)

HSP 1 Score: 189 bits (479), Expect = 8.480e-53
Identity = 104/226 (46.02%), Postives = 140/226 (61.95%), Query Frame = 2 
Query:   23 LAMSLPSLDHFNFREYDHFYEPAEDTYLLIDALQADADLLRCSVRPTVCLEIGPGSGLVTAALSELLREEKEKTPXXXXXXXXXRPLFLAAEINPRAAAACVLTAKANNVEPFEVVCCDLDICMRDRLRGQVDVLLFNPPYVPTPPEEVGSKDIAAAWAGGERGREVIDRFLPAVKELLSPGGFFYMVAVEDNNPTEIVSVMRGYGVHAEVVLRRRAKNEALCVIK 700
            + MS P   H + +++   YEPAEDT+LL+DAL+ D + L  S RP VC+EIGPGSG+V   L++LL+                   FL  + NP+AA +   TA  N V   E V  DL   ++ RL G +DVL+FNPPYV TP EEVGS  IA++WAGG+ GREV+DR LP V +LLSP G FY++ +++N P +I  +M    + ++VVL RRA  E L VIK
Sbjct:    3 IGMSTPDYSHLSSKDFHDVYEPAEDTFLLLDALEKDVEHLHSS-RPCVCVEIGPGSGIVITFLAQLLKS---------------MAFFLGVDTNPKAATSTRRTADQNGVH-VEAVTSDLLSALQPRLEGSIDVLIFNPPYVVTPSEEVGSSSIASSWAGGKDGREVLDRLLPQVSKLLSPKGSFYLLVIKENKPDDIRRLMAKQNLTSQVVLERRAGPENLSVIK 211
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.17018.1 vs. uniprot
Match: A0A8K0A4Y3_BRALA (N6AMT1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0A4Y3_BRALA)

HSP 1 Score: 189 bits (479), Expect = 8.740e-53
Identity = 102/221 (46.15%), Postives = 137/221 (61.99%), Query Frame = 2 
Query:   38 PSLDHFNFREYDHFYEPAEDTYLLIDALQADADLLRCSVRPTVCLEIGPGSGLVTAALSELLREEKEKTPXXXXXXXXXRPLFLAAEINPRAAAACVLTAKANNVEPFEVVCCDLDICMRDRLRGQVDVLLFNPPYVPTPPEEVGSKDIAAAWAGGERGREVIDRFLPAVKELLSPGGFFYMVAVEDNNPTEIVSVMRGYGVHAEVVLRRRAKNEALCVIK 700
            P L H    +Y+H YEPAEDT+LL+DAL+ DAD LR S+ P+ CLE+G GSG V   L  +L                 RP +L  ++NPRAA    +T K NNV   + V  DL   +  RL+ +VDV++FNPPYV TP EEVGS+ I A+WAGG +GREV+DRF P V +LLS  G FY+V +E N+  EI S MR +G   + ++ R+A  E L +++
Sbjct:   10 PDLSHLTAEDYEHVYEPAEDTFLLMDALEKDADFLR-SIAPSFCLEVGCGSGAVITFLGSILGS---------------RPHYLCTDLNPRAAQCAAMTGKQNNVY-VQPVLTDLASALLPRLQNKVDVMIFNPPYVVTPTEEVGSRGIEASWAGGVKGREVMDRFFPLVPKLLSEKGAFYLVTIEQNDVEEIGSKMRTFGFTMDKIMSRKAGPEKLTILR 213
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZFS4_9STRA1.130e-6854.67S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S2RT88_9STRA1.030e-5648.93Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
C3ZRS9_BRAFL7.480e-5547.06MTS domain-containing protein n=2 Tax=Branchiostom... [more]
A0A167P268_PHYB81.000e-5345.13MTS domain-containing protein n=1 Tax=Phycomyces b... [more]
A0A3B4BHK5_9GOBI1.490e-5346.02N-6 adenine-specific DNA methyltransferase 1 n=2 T... [more]
A0A667XGW5_9TELE2.020e-5346.02N-6 adenine-specific DNA methyltransferase 1 n=1 T... [more]
A0A673BHD3_9TELE5.700e-5346.61N-6 adenine-specific DNA methyltransferase 1 n=2 T... [more]
UPI000A1C2B6B5.700e-5345.06hemK methyltransferase family member 2 n=1 Tax=Bol... [more]
UPI00145501E18.480e-5346.02methyltransferase N6AMT1-like n=1 Tax=Asterias rub... [more]
A0A8K0A4Y3_BRALA8.740e-5346.15N6AMT1 protein n=1 Tax=Branchiostoma lanceolatum T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:1082156..1087029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size690
Model size1736
Exons6
Ec32 orthologEc-07_000990.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000,ko03012
Best eggNOG OGNA|NA|NA
Best tax levelChordata
COG Functional cat.J
EC2.1.1.297
EggNOG OGs39XP3@33154,3BIZ2@33208,3CZB8@33213,486TK@7711,COG2890@1,KOG3191@2759
EggNOG free text desc.Methyltransferase small domain
GOsGO:0001558,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0019538,GO:0030307,GO:0032259,GO:0032991,GO:0036211,GO:0040008,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045927,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0065007,GO:0071704,GO:0140096,GO:1901564
KEGG koko:K19589
Preferred nameN6AMT1
Seed eggNOG ortholog7739.XP_002588718.1
Seed ortholog evalue3.7e-48
Seed ortholog score198.4
Taxonomic scopeMetazoa
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.17018.1prot_E-siliculosus-1a_M_contig9.17018.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 1082184..1086011 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936395.0175636-UTR-E-siliculosus-1a_M_contig9:1082155..10821831622936395.0175636-UTR-E-siliculosus-1a_M_contig9:1082155..1082183Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1082156..1082183 +
1696251058.50148-UTR-E-siliculosus-1a_M_contig9:1082155..10821831696251058.50148-UTR-E-siliculosus-1a_M_contig9:1082155..1082183Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1082156..1082183 +
1622936395.1396658-UTR-E-siliculosus-1a_M_contig9:1086011..10870291622936395.1396658-UTR-E-siliculosus-1a_M_contig9:1086011..1087029Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1086012..1087029 +
1696251058.657975-UTR-E-siliculosus-1a_M_contig9:1086011..10870291696251058.657975-UTR-E-siliculosus-1a_M_contig9:1086011..1087029Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1086012..1087029 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936395.0376241-CDS-E-siliculosus-1a_M_contig9:1082183..10823351622936395.0376241-CDS-E-siliculosus-1a_M_contig9:1082183..1082335Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1082184..1082335 +
1696251058.5731769-CDS-E-siliculosus-1a_M_contig9:1082183..10823351696251058.5731769-CDS-E-siliculosus-1a_M_contig9:1082183..1082335Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1082184..1082335 +
1622936395.0545187-CDS-E-siliculosus-1a_M_contig9:1083143..10833121622936395.0545187-CDS-E-siliculosus-1a_M_contig9:1083143..1083312Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1083144..1083312 +
1696251058.590875-CDS-E-siliculosus-1a_M_contig9:1083143..10833121696251058.590875-CDS-E-siliculosus-1a_M_contig9:1083143..1083312Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1083144..1083312 +
1622936395.067966-CDS-E-siliculosus-1a_M_contig9:1083695..10838231622936395.067966-CDS-E-siliculosus-1a_M_contig9:1083695..1083823Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1083696..1083823 +
1696251058.6078033-CDS-E-siliculosus-1a_M_contig9:1083695..10838231696251058.6078033-CDS-E-siliculosus-1a_M_contig9:1083695..1083823Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1083696..1083823 +
1622936395.0835745-CDS-E-siliculosus-1a_M_contig9:1084741..10848141622936395.0835745-CDS-E-siliculosus-1a_M_contig9:1084741..1084814Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1084742..1084814 +
1696251058.6183772-CDS-E-siliculosus-1a_M_contig9:1084741..10848141696251058.6183772-CDS-E-siliculosus-1a_M_contig9:1084741..1084814Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1084742..1084814 +
1622936395.1010897-CDS-E-siliculosus-1a_M_contig9:1085265..10853671622936395.1010897-CDS-E-siliculosus-1a_M_contig9:1085265..1085367Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1085266..1085367 +
1696251058.6318314-CDS-E-siliculosus-1a_M_contig9:1085265..10853671696251058.6318314-CDS-E-siliculosus-1a_M_contig9:1085265..1085367Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1085266..1085367 +
1622936395.1203907-CDS-E-siliculosus-1a_M_contig9:1085945..10860111622936395.1203907-CDS-E-siliculosus-1a_M_contig9:1085945..1086011Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1085946..1086011 +
1696251058.644809-CDS-E-siliculosus-1a_M_contig9:1085945..10860111696251058.644809-CDS-E-siliculosus-1a_M_contig9:1085945..1086011Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1085946..1086011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.17018.1

>prot_E-siliculosus-1a_M_contig9.17018.1 ID=prot_E-siliculosus-1a_M_contig9.17018.1|Name=mRNA_E-siliculosus-1a_M_contig9.17018.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=230bp
MSLPSLDHFNFREYDHFYEPAEDTYLLIDALQADADLLRCSVRPTVCLEI
GPGSGLVTAALSELLREEKEKTPSQPPPPPPPRPLFLAAEINPRAAAACV
LTAKANNVEPFEVVCCDLDICMRDRLRGQVDVLLFNPPYVPTPPEEVGSK
DIAAAWAGGERGREVIDRFLPAVKELLSPGGFFYMVAVEDNNPTEIVSVM
RGYGVHAEVVLRRRAKNEALCVIKMRHQE*
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mRNA from alignment at E-siliculosus-1a_M_contig9:1082156..1087029+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.17018.1 ID=mRNA_E-siliculosus-1a_M_contig9.17018.1|Name=mRNA_E-siliculosus-1a_M_contig9.17018.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4874bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1082156..1087029+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTCTCTCCACCTCTCTCACTGGCTTGCTATGTCCCTGCCTAGCCTGGACC
ACTTCAACTTCCGAGAGTACGACCATTTCTACGAGCCAGCGGAGGACACC
TATCTCTTGATCGATGCCCTGCAGGCTGATGCGGACCTGTTGCGATGCAG
CGTCCGACCAACGGTGTGCTTGGAGATAGGGTAAGATTCACGGTGGTGGT
GCCCATGGTTCAGGTTACCCAGCGAGAAGATGAACGCCGCCTCTTTCCTC
TTGGTAGAAAAAACAAGCTCAAGTTCGGCAACAGGTAGTGCACATCTTCA
TCACTTGAGATGTAGGGGGAGGAGCTATCAAGGGGAGGGCGGATGATGCG
AAATGCAGGAATGCGGCGCAACTCCAGTTCAATGCGGCGCAACCTCCAAT
TCCAACCTCGGTGGCCGTGTCCGGCTGTCCGGCTGGGATGTCTCTCTTTG
ACACAAATAACTTGTTGCTGTAGCAGGTGCTGAGAGTGTAGTCCGTGGAT
TGCCAGTTATGTTTAAATTAAGAACACCAAAGAGCGCTGTCCAAGCTGCA
ACTCTCTCCGTCGGTATCTTACCAACCCCGCTACTCAGCGGCGGAGCACA
TTTCGCAGACCATGTTTGCAACATGCCGATTGCCATATCTTTGAAGACTC
TACACTATGGCTCAGTCAAGTTGTTGCCAATATTTTGAAACCACCATCAA
CTGCAGCGTTTTCTGCAGTTCAGTGAGCTCACAAATCACTACTGTGGCGT
GCCTCAGCCTCCAAACATCGGCTCGTGTGTTTGTAATTTCCTGTATTTTG
GCACACGTGACCGTAGGTTGCCTGAACCCCCTGCATCGTGTGCCATCGAT
CCCCCAATACCCATGAGAGATCACTGCGACTTCAATCCTGCTGCTGCCAG
AGGTTTCTGTGCATCCTTGTCGAATATGTCCGCACAACAACGATGCCACC
CATATCCCTCCCGGCCACCTTCTGAACCCCCAACGTAGGCCAGGCAGCGG
CCTAGTGACGGCGGCCCTCTCCGAGTTGCTGAGGGAAGAGAAGGAGAAGA
CACCCTCGCAGCCTCCGCCGCCGCCCCCGCCACGGCCGCTCTTCCTGGCC
GCGGAGATTAACCCGCGGGCTGCCGCGGCTTGCGTGCTCACGGCGAAGGC
CAACAACGTGCGGTGCAATAGAGAAATAGCCACTCAGATTTCATGCTAGG
GTTCCCATGATCGTATGCGTGTCTGCAGACTAGACCTGTGTGGGCATAAA
GCTTGGGGCACTTACTTCCCTACTCCAAAACTTAGAAATTGTGTTGGGGT
CCCTGCGATCGTATGCACGTCTGCAGACTAGACCTGAGAGTAGGGAGAAA
GGTCGGGGGAGTTTCCTCCTCCAAAACCTTGTCGATATCAACACTCAAGA
AGGCTTGGCGATCATCACCAGGCCAATAAATAGGCCTGTAACCTGCACAG
AGACGGAAGCGTGTTCAACTGCCCCTAAACTGGGACAGGCTAGCATCGCT
GCCCCCAACGCCATCCGTTCTTACACGCCGTTCTCGACAGGTGGAGCCGT
TCGAAGTTGTCTGCTGCGACCTCGACATCTGCATGCGGGATCGCTTGAGA
GGGCAGGTCGACGTCCTGCTGTTCAACCCTCCCTATGTTCCAACACCACC
GGAGGAGGTCGGTTCAAAGTGAGAGAATGCACCGTGCTGGGGGGGGCGTA
CTCATGTAAATGCATGCCGTAGTCGTTAGACCATTGGCCTCGTATCCCGG
GACAGAGCGATATGCCGGGCGTTCGACGGGCCAGGCTACGTTTCACAAAC
ATGAACCAGAAGCTGGTCATCATGCTTGCCTTTGCTGTGCCAAACCAGAT
ATGCCACAGCACAGGGGGGGGAAATGACCCGGTATTGCTGCAAACATTAA
CACTCTATGCGCTACCGTAGGTTGCCCAAGATACCACACCCCCTGGACCG
ATTTTCAAAACTCGATTACTTCACGACAAAGAGGATACCGAAGGCAAACG
ATACGTGTTCGGAAAGCTCTCGACGGAACGGTTTCCAACTCCGCCGTTTT
CGGCACCGTCCCTGCTTTCCCAGCCGAGAAACCAAGCTTTAAAAATCGGC
CCAGGGTGTGTGATATCTTATGCAACCTACGGTAGTTGGCTCCGCAGATG
GTGTTGCTTGGCTATTGGCGGTGGGCGGTGACGATGGCTGGGCTTACCAC
GATCTACCCTTTGTTCAGTAGCGGAAACTTACGTCGTGTGTTCCCCCTGG
TGTCTTGCATCCATTACTGACGGGTGGATGTCCCCCCGCTGAGCAGAAGT
GTCTTCTTGAGGGACGGGTTTCACGTGAAGAACACCGGGTAGGCAGGGAG
TGAAATACGGGAGGAGTTACTCTGTCGGTTGTTCTATCCAGCTGGTGGAA
CCCCTTCTTGACGGTGGAGTCTTGTGCCTCCAGTCTGTGTTTTTCTCATC
AACGCCTTTGTCCTGACTTGCGTGCACCTCTGCGGATATCTGTTCGACTC
TTGTCCGCCCTCTTGCCTTCTCGACGTGCTTTTTTTTTTTTGCGGCGATT
ATTGTCGGAACGCTGCGTCGCCGCGAGATTTTGCAGGGATATTGCAGCCG
CCTGGGCAGGAGGTGAACGGGGACGAGAAGTCATAGACAGGTTTCTACCG
GCAGTTAAGGTGCGGCGGGTTTCGGATCGGCGGGACTAGAAACACACAGA
GTGTGTCTCGCAGGCGAAAGGCGTCACGCGTAGCACAATTGCACGTGCGG
ACCAACTCCACTACTCCTACAGACGCTGAATGCGACGTCTCTAACGACGT
GTTGAGGAACGAGTTCCATCCATGGCGAATGGCACGCTCAGTCTTCAAGC
AGGCATAGCTTAAACTTTACTCTGGACATGCACAAGAGGAAGCGAGGCTT
ACGCAATGCTTGGGGTTTGCATTAGAGAGCCGGCTGGTACAACCTTCGAC
CCGATCTTCGCCACACGCACGGCCCGCCTGGTTCCGCAACGTCTTGGGGG
TTTGGAGCCTTGGCTTCGGGGATGAGAGCTGAGATGTGCAGCACAAGCGT
GTGGCCAATAGACATCGATGGCAGAATGTGATGCCGTCACCATCCTTGCC
CTTGTTCCAGGAGCTCCTAAGCCCGGGCGGCTTCTTCTACATGGTGGCTG
TGGAGGACAACAATCCGACAGAAATCGTTTCCGTCATGCGGGGCTACGGC
GTGCACGCTGAGGTGAGAGAACCAATAGGTGCACCCCTCACTATTTGGTG
CACCTCACTATTGTAGTTCGACCTTGACGAGAAGAACCGCAGTGCCCACG
TTTTCCTCCGCCCACGACCAAAGCAGATCCAGGGGGTTCGGGTGTTAACC
AAATATCTGCTGCAGAAAGGCGGTGTATCTTAGGGTAGGTATTCCACCCT
CAATTCTTCTTCTTATGTTGTACATCGTGAAGGTGGCCGGCCCCCTGGTG
AACAGCGCGAGCGACCTATCCCTCGTTGATTCGAATATCGTTGCAACTTC
GACGGACTCGTTTCCTCGGAGACCCCTTTCAAGCACACTTGGACTATGTG
GGCATCTTCGAGAGGTAGTCCCCGGGTCACAGGTTTTTCCCCTGGGTTTC
GAACGTCTGCATGTTTCATGAGTTAACTCGACAAGCCATATCCAGACCAC
GGCTCAGTCCTCAAGAGACCCCCTGCGGTTGTTGTGATGGCATTCCTTTG
GCCACGACCAGGCTTGCACAAACCCCCACGTTCCTAGCGAGTACTTGATC
GATACATACCGTACCCCCTACGTCCCGGGACTGCTGTTAGGTGGTTCTCC
GTCGGAGGGCGAAAAATGAAGCACTGTGCGTCATCAAGATGCGTCACCAG
GAGTGAACGAAAGGGTGCTCGGAGTTTATCGTGTGAGATGTTCACAAACG
ATTTACTTAACCCCTTTGGGTCTAGCTCTTTTTTTTTTGGGCAAAAAAAC
AAGGTAGGAGAGAGTGCGGGAGAGAGAGAGGAGCACAGCAGAAAGAGACG
AGTGTACTTCTGTAGGCGCAACAGCTATCTCCACACATGGGCCATGAGAG
CAGCCCGCGACAGGACGGTGGGCACAGACAGGGTCATAGAAGGGTTGATG
CGTGGTCGCGGTGCGGCCGGTAGGTCAGGTCAGACTTGAAGACCTCGAAA
AGATCAGTCGCCAAGACGCCTAAACTACTCTATTTTCAGTATATTCAAAT
GATCAGTGAAAATCAGTGATAGGGCTTGCAGACCCATAGCTGGTTATTGT
GCTTCGGTACTTCTCTGGCCCCTCCCCAATGTGAGCCCTGCCGGCTCACT
ACAGCTTCTGTGATTTCCCACAATTCCCACAAGCCCGCAGGCACACCAGC
ACACACCTACCTTTGCACCAGTGGCTCTCTAGGTTCGGGCGAGGGTATGT
GTTGGGCTATGATGACAGTGTATATTTTACTATCTGTTTGTTGGACTCGT
CTATACTGATGCTGCTGCTGAGTAGTATAGCTGCTGACACGATGACTGCT
GGATCTTGGGAGTGTACGATTTTCAAATTTGGAGAATAGTCTACGCAGCA
TTCCACGATATCCTGGCCTGGTTTGGCTTGAAATGCCCCTTTTAGTGTAA
TCCTGTCTTTAATGGCTTCCTAGATTCGGGCGAGGGCATGTAGGTGGAGC
TATTGATGTGTGTCTCTGTGAAAGGATGTGGGGAGAGATTCATGGTGGTT
TTTGCATTTAGCGCATCGTGCATTTTTCGACTTTGGCCGTTCCAGGGACC
TTGATTTTACCCGCTGCCACTATTCACGTATTTTCATTGGTCGCCGGGTA
GCGCGGTCGATTCGAATAATAAAGACACACCTACCTATGGACTTGCCAAC
ACCTGGCGTGGAGGGAGACAGGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:1082156..1087029+

>mRNA_E-siliculosus-1a_M_contig9.17018.1 ID=mRNA_E-siliculosus-1a_M_contig9.17018.1|Name=mRNA_E-siliculosus-1a_M_contig9.17018.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1380bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1082156..1087029+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCCCTGCCTAGCCTGGACCACTTCAACTTCCGAGAGTACGACCATTT
CTACGAGCCAGCGGAGGACACCTATCTCTTGATCGATGCCCTGCAGGCTG
ATGCGGACCTGTTGCGATGCAGCGTCCGACCAACGGTGTGCTTGGAGATA
GGATGTCCCTGCCTAGCCTGGACCACTTCAACTTCCGAGAGTACGACCAT
TTCTACGAGCCAGCGGAGGACACCTATCTCTTGATCGATGCCCTGCAGGC
TGATGCGGACCTGTTGCGATGCAGCGTCCGACCAACGGTGTGCTTGGAGA
TAGGGCCAGGCAGCGGCCTAGTGACGGCGGCCCTCTCCGAGTTGCTGAGG
GAAGAGAAGGAGAAGACACCCTCGCAGCCTCCGCCGCCGCCCCCGCCACG
GCCGCTCTTCCTGGCCGCGGAGATTAACCCGCGGGCTGCCGCGGCTTGCG
TGCTCACGGCGAAGGCCAACAACGCCAGGCAGCGGCCTAGTGACGGCGGC
CCTCTCCGAGTTGCTGAGGGAAGAGAAGGAGAAGACACCCTCGCAGCCTC
CGCCGCCGCCCCCGCCACGGCCGCTCTTCCTGGCCGCGGAGATTAACCCG
CGGGCTGCCGCGGCTTGCGTGCTCACGGCGAAGGCCAACAACGTGGAGCC
GTTCGAAGTTGTCTGCTGCGACCTCGACATCTGCATGCGGGATCGCTTGA
GAGGGCAGGTCGACGTCCTGCTGTTCAACCCTCCCTATGTTCCAACACCA
CCGGAGGAGGTCGGTTCAAAGTGGAGCCGTTCGAAGTTGTCTGCTGCGAC
CTCGACATCTGCATGCGGGATCGCTTGAGAGGGCAGGTCGACGTCCTGCT
GTTCAACCCTCCCTATGTTCCAACACCACCGGAGGAGGTCGGTTCAAAGG
ATATTGCAGCCGCCTGGGCAGGAGGTGAACGGGGACGAGAAGTCATAGAC
AGGTTTCTACCGGCAGTTAAGGGATATTGCAGCCGCCTGGGCAGGAGGTG
AACGGGGACGAGAAGTCATAGACAGGTTTCTACCGGCAGTTAAGGAGCTC
CTAAGCCCGGGCGGCTTCTTCTACATGGTGGCTGTGGAGGACAACAATCC
GACAGAAATCGTTTCCGTCATGCGGGGCTACGGCGTGCACGCTGAGGAGC
TCCTAAGCCCGGGCGGCTTCTTCTACATGGTGGCTGTGGAGGACAACAAT
CCGACAGAAATCGTTTCCGTCATGCGGGGCTACGGCGTGCACGCTGAGGT
GGTTCTCCGTCGGAGGGCGAAAAATGAAGCACTGTGCGTCATCAAGATGC
GTCACCAGGAGTGAGTGGTTCTCCGTCGGAGGGCGAAAAATGAAGCACTG
TGCGTCATCAAGATGCGTCACCAGGAGTGA
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