mRNA_E-siliculosus-1a_M_contig9.17009.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.17009.1 vs. uniprot
Match: D7G1I1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G1I1_ECTSI) HSP 1 Score: 528 bits (1361), Expect = 3.170e-188 Identity = 259/268 (96.64%), Postives = 260/268 (97.01%), Query Frame = 1
Query: 235 MTSVCKPDLSSLPTFNVAGGRPDERFATRGSFTRGVRIMSGGHARDVPREAEVDHGKVLFVSAVHKPDLSAEVRTNAVRRTERLGTRGRFTPGGRRWVGGKPRDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNAIRPAERLGSRGRFTAGVRGWAGGKPRDVPLPRLRDPGTVLFESASERSRPSMSFSGETNVSGGREDERHGRLGSFEHGVVEARGGPLQVQAAFASEVELLWHEGGQKENKYRRCGPSHFVAGVSVLSGGMPVY 1038
MTSVCK DLS LPTFNVAGGRPDERF TRGSFTRGVRIMSGGH RDVPREAEVDHGKVLFVSAVHKPDLSAE RTNAVR TERLGTRGRFTPGGRRWVGGKPRDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNAIRP ERLGSRGRFTAGVRGW GGKPRDVPLPRLRDPGTVLFESASERSRPSMSFSGETNVSGGREDERHGRLGSFEHGVVEARGGPLQVQAAFASEVELLWHEGGQKENKYRRCGPSHFVAGVS+LSGGMPVY
Sbjct: 1 MTSVCKSDLSGLPTFNVAGGRPDERFGTRGSFTRGVRIMSGGHTRDVPREAEVDHGKVLFVSAVHKPDLSAEARTNAVRPTERLGTRGRFTPGGRRWVGGKPRDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNAIRPKERLGSRGRFTAGVRGWVGGKPRDVPLPRLRDPGTVLFESASERSRPSMSFSGETNVSGGREDERHGRLGSFEHGVVEARGGPLQVQAAFASEVELLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY 268
BLAST of mRNA_E-siliculosus-1a_M_contig9.17009.1 vs. uniprot
Match: D7FZE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE3_ECTSI) HSP 1 Score: 509 bits (1311), Expect = 3.520e-176 Identity = 255/286 (89.16%), Postives = 263/286 (91.96%), Query Frame = 1
Query: 193 SSQGFVP--TINNIN--AMTSVCKPDLSSLPTFNVAGGRPDERFATRGSFTRGVRIMSGGHARDVPREAEVDHGKVLFVSAVHKPDLSAEVRTNAVRRTERLGTRGRFTPGGRRWVGGKPRDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNAIRPAERLGSRGRFTAGVRGWAGGKPRDVPLPRLRDPGTVLFESASERSRPSMSFSGETNVSGGREDERHGRLGSFEHGVVEARGGPLQVQAAFASEVELLWHEGGQKENKYRRCGPSHFVAGVSVLSGGMPVY 1038
+++GFV TINN N AMTSV KPDLS LPTFNVAGGRPDERF TRGSFTRGVRIMSGGHARDVP EAEVDHGKVLFVSA+HKPDLS E RTNAVR ERLG RGRFTPGGRRW GGKPRDVPLEAEVDHGKVL VSAVHKPDLSAEAR NA RP ERLGSRGRFTAGVR W GG+PRDVPLPR+RDPGTVLFESASERSRPS+SFSGETNVSGGREDERHGRLGSFEHGVVEARGGPLQVQAAFASEVE LWHEGGQKENKYRRCGPSHFVAGVS+LSGGMPVY
Sbjct: 272 TTRGFVAITTINNDNSSAMTSVHKPDLSGLPTFNVAGGRPDERFGTRGSFTRGVRIMSGGHARDVPLEAEVDHGKVLFVSAIHKPDLSTEARTNAVRPMERLGARGRFTPGGRRWAGGKPRDVPLEAEVDHGKVLLVSAVHKPDLSAEARINATRPTERLGSRGRFTAGVRRWGGGEPRDVPLPRVRDPGTVLFESASERSRPSLSFSGETNVSGGREDERHGRLGSFEHGVVEARGGPLQVQAAFASEVEQLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY 557
BLAST of mRNA_E-siliculosus-1a_M_contig9.17009.1 vs. uniprot
Match: A0A6H5KBU2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU2_9PHAE) HSP 1 Score: 369 bits (946), Expect = 5.690e-126 Identity = 192/268 (71.64%), Postives = 199/268 (74.25%), Query Frame = 1
Query: 235 MTSVCKPDLSSLPTFNVAGGRPDERFATRGSFTRGVRIMSGGHARDVPREAEVDHGKVLFVSAVHKPDLSAEVRTNAVRRTERLGTRGRFTPGGRRWVGGKPRDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNAIRPAERLGSRGRFTAGVRGWAGGKPRDVPLPRLRDPGTVLFESASERSRPSMSFSGETNVSGGREDERHGRLGSFEHGVVEARGGPLQVQAAFASEVELLWHEGGQKENKYRRCGPSHFVAGVSVLSGGMPVY 1038
MTSV KPDLS LP FNVAGGRPDERF TRGSFTRGV IMSGGHARD VPLEAEVDHGKVLFVSAVHKPDLSAEARTNA+RP ERLGSRGRFTAGVR WAGG+PRDVPLPR+ DPGTVLFESASERSRPS+SFS ETNVSGGR+DERHGRLGSFEHGVVEARGGPLQVQAAFA +VE LWHEGGQKENKYRRCGPSHFVAGVS+LSGGMPVY
Sbjct: 1 MTSVHKPDLSGLPAFNVAGGRPDERFGTRGSFTRGVHIMSGGHARD----------------------------------------------------------VPLEAEVDHGKVLFVSAVHKPDLSAEARTNAVRPTERLGSRGRFTAGVRRWAGGEPRDVPLPRVCDPGTVLFESASERSRPSLSFSRETNVSGGRQDERHGRLGSFEHGVVEARGGPLQVQAAFARDVEQLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY 210
BLAST of mRNA_E-siliculosus-1a_M_contig9.17009.1 vs. uniprot
Match: A0A6H5KAW1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW1_9PHAE) HSP 1 Score: 352 bits (904), Expect = 1.280e-119 Identity = 179/203 (88.18%), Postives = 184/203 (90.64%), Query Frame = 1
Query: 202 GFVP--TINN--INAMTSVCKPDLSSLPTFNVAGGRPDERFATRGSFTRGVRIMSGGHARDVPREAEVDHGKVLFVSAVHKPDLSAEVRTNAVRRTERLGTRGRFTPGGRRWVGGKPRDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNAIRPAERLGSRGRFTAGVRGWAGGKPRDVPLPRLRDPGTVLFESASERSRPSMS 798
GFVP TINN I AMTSV KPDLS LP FNVAGGRPDERF TRGSFTRGV IMSGGHARDVP EAEVDHGKVLFVSA+HKPDLSAE RTNAVR ERLG RGRFTPGGRRW GGKPRDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNA+RP ERLGSRGRFTAGVR WAGG+PRDVPLPR+ DPGTVLFESASERSRPS+S
Sbjct: 4 GFVPITTINNDNIRAMTSVHKPDLSGLPAFNVAGGRPDERFGTRGSFTRGVHIMSGGHARDVPLEAEVDHGKVLFVSAIHKPDLSAEARTNAVRPMERLGARGRFTPGGRRWAGGKPRDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNAVRPTERLGSRGRFTAGVRRWAGGEPRDVPLPRVCDPGTVLFESASERSRPSLS 206
BLAST of mRNA_E-siliculosus-1a_M_contig9.17009.1 vs. uniprot
Match: A0A6H5KZP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP0_9PHAE) HSP 1 Score: 284 bits (726), Expect = 2.130e-92 Identity = 164/267 (61.42%), Postives = 177/267 (66.29%), Query Frame = 1
Query: 235 MTSVCKPDLSSLPTFNVAGGRPDERFATRGSFTRGVRIMSGGHARDVPREAEVDHGKVLFVSAVHKPDLSAEVRTNAVRRTERLGTRGRFTPGGRRWVGGKPRDV-PLEAEVDHGKVLFVSAVHKPDLSAEARTNAIRPAERLGSRGRFTAGVRGWAGGKPRDVPLPRLRDPGTVLFESASERSRPSMSFSGETNVSGGREDERHGRLGSFEHGVVEARGGPLQVQAAFASEVELLWHEGGQKENKYRRCGPSHFVAGVSVLSGGMP 1032
MTSV KPDLS LPTFNVAGGRPD RF TRGSFT GVRIMSGGHAR VPREAEVDHG V A +RR L R P G PR+ PL H + + P AIRP ERLGSRGRFT+G+RGWAGGKP DV LPR+RDPGTVLFESASERSRPS+SFSGETNVSGG+EDE ARGGPLQVQAAF SEVELLW EGGQ+E+KYRRCGPSH+V GVS+ G MP
Sbjct: 1 MTSVYKPDLSGLPTFNVAGGRPDGRFGTRGSFTLGVRIMSGGHARGVPREAEVDHGNVRRAQA------------GPLRRGPHL----RHPPHG------APRNPGPL-----HAGRTSLGRISPP------WPTAIRPTERLGSRGRFTSGIRGWAGGKPPDVTLPRVRDPGTVLFESASERSRPSLSFSGETNVSGGKEDE--------------ARGGPLQVQAAFTSEVELLWREGGQREHKYRRCGPSHYVTGVSIPFGDMP 220 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig9.17009.1 >prot_E-siliculosus-1a_M_contig9.17009.1 ID=prot_E-siliculosus-1a_M_contig9.17009.1|Name=mRNA_E-siliculosus-1a_M_contig9.17009.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=347bp MFLENVGGVQSSPDHAIPNKLPAPPPIAQLRLSPTLTPSQHRHHPHLYFHback to top mRNA from alignment at E-siliculosus-1a_M_contig9:991014..994306+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig9.17009.1 ID=mRNA_E-siliculosus-1a_M_contig9.17009.1|Name=mRNA_E-siliculosus-1a_M_contig9.17009.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3293bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:991014..994306+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:991014..994306+ >mRNA_E-siliculosus-1a_M_contig9.17009.1 ID=mRNA_E-siliculosus-1a_M_contig9.17009.1|Name=mRNA_E-siliculosus-1a_M_contig9.17009.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2082bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:991014..994306+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |