mRNA_E-siliculosus-1a_M_contig9.17004.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.17004.1 vs. uniprot
Match: A0A6H5K3X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X8_9PHAE) HSP 1 Score: 813 bits (2100), Expect = 1.860e-286 Identity = 560/683 (81.99%), Postives = 576/683 (84.33%), Query Frame = 1
Query: 1 RQDDDRNRKDDDVAVVVGQLVPAPTLTAYAVSATSRTTPDNTLWAATARGPSSSSSYAAPVMHNSTGSFSVAGTSTSXXXXXXXXXXXXXXXXXXXXXXXXXXVEGDSAAXXXXGGGEGTYIPVMTHTGTQNVPGCGTASSTGGRRFGEGAPATTXXXXXXXXXXXXXXXXXXXGSLPMEDGDYVADGGPVLVACGQGKSMYNVKGCMSSWVLVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSSQSWALRSEDNPAGDGGVMCSACVPSIASGQASGTLITGGKDSVLREWEIAEGRPRLVANISGHTDWISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKSAAAAAEAXXXXXXSDALAKESAQGKRKSSLRAAFASGSRSSSGRDLGSGXXXXXXXXXXXXXXXXXWSLASSVTTAHGSSEFVTCCAXXXXXXXXXXGWVATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVATLRGEVAAAADPSSLSEASSLSEAFSSGVSVVEREGSLQGGLAGARSRGESGRWEGETTGATMLNAVNCLAAGGAGSGGDWLFAAGETVVRSWRRRDGVWHGGAGLPGKGLGGIASLSVIE 2049
R DDDR+R+DDDVAVV+GQLVPAP L AYAVSATSR TPD T WAAT+RGPSSS SYAAPVMHNSTGSFSVAGTSTS XXXXXX XXXXXXXVE DSA+ GG EGTY+PVMTHTG NVPGCG ASSTGGRRFGEGAPATT GSLPM+DGDYVADGGPVLVACGQGKSMY VKGC+SSWVLVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPS+QSWALRSEDNPAGDGGVMCSACVPSIASGQ+SGTLITGGKDSVLREWEIAEGRPRLVA+ISGHTDWISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKSAA XXXXXX XXXXXXXXXXXXXXXXXWSLASSV TAHGSSEFVT XXXXXXXX GWVATGGTDWSVRLWDVVKSRELGRLSFMGHSH VRSLACSSDGNLLVSGGDDHKVIVWSPQSRR +ATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVATLRGEVAAA S+ + SSLS AFSSGVSVVEREGSLQGGLAGARSRGESGRWEGET GATMLNAVNCLAAGGAGS GDWLFAAGETVVRSWRRRDG+WHGGAGLPG+GLGGIASLSVIE
Sbjct: 25 RPDDDRSRRDDDVAVVIGQLVPAPALPAYAVSATSRATPDRTPWAATSRGPSSSPSYAAPVMHNSTGSFSVAGTSTSGGXXXXXXRRGSSGGPVAGXXXXXXXVEEDSASAAAAGG-EGTYMPVMTHTGMHNVPGCGIASSTGGRRFGEGAPATTAAARGAPFALEGGG-----GSLPMKDGDYVADGGPVLVACGQGKSMYKVKGCISSWVLVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSNQSWALRSEDNPAGDGGVMCSACVPSIASGQSSGTLITGGKDSVLREWEIAEGRPRLVAHISGHTDWISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKSAAXXXXXXXXXXXXXXX---------------------------XXXXXXXXXXXXXXXXXXXXXXWSLASSVATAHGSSEFVTXXXXXXXXXXXAAGWVATGGTDWSVRLWDVVKSRELGRLSFMGHSHQVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRVVATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVATLRGEVAAA---SAAAAPSSLSGAFSSGVSVVEREGSLQGGLAGARSRGESGRWEGETAGATMLNAVNCLAAGGAGSCGDWLFAAGETVVRSWRRRDGIWHGGAGLPGEGLGGIASLSVIE 671
BLAST of mRNA_E-siliculosus-1a_M_contig9.17004.1 vs. uniprot
Match: D7G1I6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I6_ECTSI) HSP 1 Score: 669 bits (1727), Expect = 2.500e-232 Identity = 428/575 (74.43%), Postives = 436/575 (75.83%), Query Frame = 1
Query: 364 IPVMTHTGTQNVPGCGTASSTGGRRFGEGAPATTXXXXXXXXXXXXXXXXXXXGSLPMEDGDYVADGGPVLVACGQGKSMYNVKGCMSSWVLVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSSQSWALRSEDNPAGDGGVMCSACVPSIASG-------------QASGTLITGGKDSVLREWEIAEGRPRLVANISGHTDWISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKSAAAAAEAXXXXXXSDALAKESAQGKRKSSLRAAFASGSRSSSGRDLGSGXXXXXXXXXXXXXXXXXWSLASSVTTAHGSSEFVTCCAXXXXXXXXXXGWVATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVATLRGEVAAAADPSSLSEASSLSEAFSSGVSVVEREGSLQGGLAGARSRGESGRWEGETTGATMLNAVNCLAAGGAGSGGDWLFAAGETVVRSWRRRDGVWHGGAGLPGKGLGGIASLSVIE 2049
+PVMTHTGT+NVPGCGTASSTGGRRFGEGAPATTXXXXXXXXXXXXXXXXXXXGSLPM+DGDYVADGGPVLVACGQGKSMYNVKGCMSSWVLVG G GG A +A+ QASGTLITGGKDSVLREWEIAEGRPRLVA+ISGHTDWIS HKS AAAAEA SDALAKESAQGKRKSSLRAAFASGSRSSSGRDLGSGXXXXXXXXXXXXXXXXX XXXXXXXXX GWVATGGTDWSVRLWDVVK RELGRLSFMGHSHPVRSLACSSDG LLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVA LRGEV AA DPSS LSEAFSSG+SV EREG LQGGLAGARSRGESGRWEGETTGATMLNAVNCLAAGGAGSGGDWLFAAGETVVRSWRRRDGVWHGGAGLPG+GLGGIASLSVIE
Sbjct: 1 MPVMTHTGTKNVPGCGTASSTGGRRFGEGAPATTXXXXXXXXXXXXXXXXXXXGSLPMKDGDYVADGGPVLVACGQGKSMYNVKGCMSSWVLVG---------------------------------------------GGGGEQPDAVKEKMATXXXXXXXXXXXXXXQASGTLITGGKDSVLREWEIAEGRPRLVAHISGHTDWISCCALVPSATAGVAPSVAVSGGRDASVRFWHKSDAAAAEAAAARAASDALAKESAQGKRKSSLRAAFASGSRSSSGRDLGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXGGWVATGGTDWSVRLWDVVKFRELGRLSFMGHSHPVRSLACSSDGKLLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVAILRGEVTAA-DPSS------LSEAFSSGMSVAEREGGLQGGLAGARSRGESGRWEGETTGATMLNAVNCLAAGGAGSGGDWLFAAGETVVRSWRRRDGVWHGGAGLPGEGLGGIASLSVIE 520
BLAST of mRNA_E-siliculosus-1a_M_contig9.17004.1 vs. uniprot
Match: A0A1Y2EVM9_9BASI (Uncharacterized protein n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2EVM9_9BASI) HSP 1 Score: 74.3 bits (181), Expect = 8.360e-10 Identity = 38/106 (35.85%), Postives = 54/106 (50.94%), Query Frame = 1
Query: 1339 WVATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVW 1656
WVA+GG D +RLWDV + R L V SLA + G+LL +G + V VW P+SRR +A L H V GV + G+ +W+ S + + +W
Sbjct: 304 WVASGGFDRKIRLWDVGEGRASSVLELPSPPASVYSLATTPSGSLLAAGTPERVVRVWDPRSRRQVARLSGHTDNVRGVLI------GEEGKWLLSASSDSTVKLW 403
BLAST of mRNA_E-siliculosus-1a_M_contig9.17004.1 vs. uniprot
Match: A0A524L7R5_THOAR (WD40 repeat domain-containing protein n=1 Tax=Thorarchaeota archaeon (strain OWC) TaxID=2053491 RepID=A0A524L7R5_THOAR) HSP 1 Score: 68.6 bits (166), Expect = 1.850e-8 Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = 1
Query: 1342 VATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGD-DHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWD 1659
+ +GG D ++RLWD +EL + F+GH PV ++ DG LVS D D V +W Q +++L +++ V VAV P R++ +GG +GF +WD
Sbjct: 36 IISGGQDATIRLWDFASGKELHK--FVGHEGPVYNMVMMQDGKHLVSIADKDLAVKIWDIQKHELVSSLAPNSAHVTAVAVSPDQ------RYLVTGGEDGFARIWD 134
BLAST of mRNA_E-siliculosus-1a_M_contig9.17004.1 vs. uniprot
Match: UPI00053FFA0A (DENN domain and WD repeat-containing protein SCD1 isoform X1 n=3 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FFA0A) HSP 1 Score: 68.2 bits (165), Expect = 6.420e-8 Identity = 41/113 (36.28%), Postives = 59/113 (52.21%), Query Frame = 1
Query: 1336 GWVATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFG 1674
G+ +G TD SVR+WD + R + GH+ VR++ SSD +VSG DDH ++VW Q PL LK H + V + SGD+ + S +G + +WD R G
Sbjct: 917 GFFISGSTDCSVRIWDPSRRGSELRATLRGHTGAVRAI--SSDRWKVVSGSDDHSILVWDKQQFIPLEELKGHEGQISCVRM----LSGDS---VLSSSHDGTVKMWDARTGG 1020
BLAST of mRNA_E-siliculosus-1a_M_contig9.17004.1 vs. uniprot
Match: UPI000A3C1F0E (hypothetical protein n=1 Tax=Lentzea kentuckyensis TaxID=360086 RepID=UPI000A3C1F0E) HSP 1 Score: 66.2 bits (160), Expect = 2.580e-7 Identity = 46/129 (35.66%), Postives = 67/129 (51.94%), Query Frame = 1
Query: 1342 VATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDHKVI-VWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVW--DPRNFGSPVATLRGEVAAAAD 1719
+A+GG+D +VRLWDV +++G GH+ VR +A DG L S D V+ +W SR PLA ++ S G+AV PGT IA+ G + +W DP + S V ++ G + AD
Sbjct: 1244 LASGGSDRTVRLWDVATRKQIGA-QLTGHNGVVRGVAFLPDGRTLASVSDYDLVLRLWDVPSRTPLAAVRGSGS-FDGIAVQPGT------GLIATAGLNNVVGIWNPDPASVKSQVCSILGGQQSVAD 1364
BLAST of mRNA_E-siliculosus-1a_M_contig9.17004.1 vs. uniprot
Match: A0A497Q7I7_THOAR (Uncharacterized protein n=2 Tax=Thorarchaeota archaeon (strain OWC) TaxID=2053491 RepID=A0A497Q7I7_THOAR) HSP 1 Score: 65.1 bits (157), Expect = 2.680e-7 Identity = 39/107 (36.45%), Postives = 57/107 (53.27%), Query Frame = 1
Query: 1342 VATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGD-DHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWD 1659
+ +GG D ++RLWDV REL +L+ GH PV LA +D LVS D D V +WS +++L +++ V VAV P H +I +G +G + WD
Sbjct: 63 IISGGQDATIRLWDVGTGRELQKLT--GHEGPVYGLAVMADNQRLVSIADKDLAVKIWSLDDYALISSLAPNSAHVKTVAVSPDQH------YIVTGSADGIVRFWD 161
BLAST of mRNA_E-siliculosus-1a_M_contig9.17004.1 vs. uniprot
Match: A0A5R9FQU6_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces montanus TaxID=2580423 RepID=A0A5R9FQU6_9ACTN) HSP 1 Score: 65.5 bits (158), Expect = 3.650e-7 Identity = 41/126 (32.54%), Postives = 63/126 (50.00%), Query Frame = 1
Query: 1342 VATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDG---NLLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVATLRGEVAA 1710
+A G D++VRLWD+ + R L + H + VR++A +SDG + SG D V +W+ P L ++ VA++ GT P ++ASGG + + +WD R LRG AA
Sbjct: 579 LAISGDDFTVRLWDLDRERPLQQWR---HPYTVRTVAAASDGVSADWFASGSADGTVRLWAATDHAPKKVLYCRQGIINAVAINTGTSP--LPPFLASGGDDRTVRIWDLRTLEPIGEPLRGHTAA 699
BLAST of mRNA_E-siliculosus-1a_M_contig9.17004.1 vs. uniprot
Match: A0A199VEU0_ANACO (DENN domain and WD repeat-containing protein SCD1 n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A199VEU0_ANACO) HSP 1 Score: 65.5 bits (158), Expect = 4.270e-7 Identity = 39/111 (35.14%), Postives = 61/111 (54.95%), Query Frame = 1
Query: 1336 GWVATGGTDWSVRLWDV-VKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPR 1665
G+ +G TD V++WD ++ EL R + GH+ P+R++ +SD + +VSG DDH VIVW Q+ R L LK H + V V + G + + +G + +WD R
Sbjct: 884 GFFISGSTDCLVKVWDPSMRGSEL-RATLRGHTRPIRAI--NSDRSKIVSGSDDHSVIVWDKQTFRLLEELKGHDAPVSCVRMLSGER-------VLTASHDGTVKMWDVR 984
BLAST of mRNA_E-siliculosus-1a_M_contig9.17004.1 vs. uniprot
Match: A0A804ITL0_MUSAM (UDENN domain-containing protein n=4 Tax=Musa TaxID=4640 RepID=A0A804ITL0_MUSAM) HSP 1 Score: 64.7 bits (156), Expect = 7.410e-7 Identity = 37/111 (33.33%), Postives = 61/111 (54.95%), Query Frame = 1
Query: 1336 GWVATGGTDWSVRLWDV-VKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPR 1665
G+ +G TD V++WD ++ EL R + GH+ P+R++ +SD + +VSG DDH +IVW Q+ + L LK H + V V + G + + +G + +WD R
Sbjct: 885 GFFISGSTDCLVKIWDPSLRGSEL-RATLKGHTRPIRAI--NSDRSKVVSGSDDHSIIVWDKQTSQLLEELKGHEAPVSCVRMLSGER-------VLTAAHDGTVKMWDVR 985 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig9.17004.1 >prot_E-siliculosus-1a_M_contig9.17004.1 ID=prot_E-siliculosus-1a_M_contig9.17004.1|Name=mRNA_E-siliculosus-1a_M_contig9.17004.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=623bp MHNSTGSFSVAGTSTSGGARSGGLRRRGSGGSVAGGKARGGGVEGDSAAAback to top mRNA from alignment at E-siliculosus-1a_M_contig9:929512..934181- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig9.17004.1 ID=mRNA_E-siliculosus-1a_M_contig9.17004.1|Name=mRNA_E-siliculosus-1a_M_contig9.17004.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4670bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:929512..934181- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:929512..934181- >mRNA_E-siliculosus-1a_M_contig9.17004.1 ID=mRNA_E-siliculosus-1a_M_contig9.17004.1|Name=mRNA_E-siliculosus-1a_M_contig9.17004.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3738bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:929512..934181- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |