mRNA_E-siliculosus-1a_M_contig9.17004.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.17004.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.17004.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.17004.1 vs. uniprot
Match: A0A6H5K3X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X8_9PHAE)

HSP 1 Score: 813 bits (2100), Expect = 1.860e-286
Identity = 560/683 (81.99%), Postives = 576/683 (84.33%), Query Frame = 1
Query:    1 RQDDDRNRKDDDVAVVVGQLVPAPTLTAYAVSATSRTTPDNTLWAATARGPSSSSSYAAPVMHNSTGSFSVAGTSTSXXXXXXXXXXXXXXXXXXXXXXXXXXVEGDSAAXXXXGGGEGTYIPVMTHTGTQNVPGCGTASSTGGRRFGEGAPATTXXXXXXXXXXXXXXXXXXXGSLPMEDGDYVADGGPVLVACGQGKSMYNVKGCMSSWVLVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSSQSWALRSEDNPAGDGGVMCSACVPSIASGQASGTLITGGKDSVLREWEIAEGRPRLVANISGHTDWISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKSAAAAAEAXXXXXXSDALAKESAQGKRKSSLRAAFASGSRSSSGRDLGSGXXXXXXXXXXXXXXXXXWSLASSVTTAHGSSEFVTCCAXXXXXXXXXXGWVATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVATLRGEVAAAADPSSLSEASSLSEAFSSGVSVVEREGSLQGGLAGARSRGESGRWEGETTGATMLNAVNCLAAGGAGSGGDWLFAAGETVVRSWRRRDGVWHGGAGLPGKGLGGIASLSVIE 2049
            R DDDR+R+DDDVAVV+GQLVPAP L AYAVSATSR TPD T WAAT+RGPSSS SYAAPVMHNSTGSFSVAGTSTS  XXXXXX           XXXXXXXVE DSA+    GG EGTY+PVMTHTG  NVPGCG ASSTGGRRFGEGAPATT                   GSLPM+DGDYVADGGPVLVACGQGKSMY VKGC+SSWVLVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPS+QSWALRSEDNPAGDGGVMCSACVPSIASGQ+SGTLITGGKDSVLREWEIAEGRPRLVA+ISGHTDWISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKSAA     XXXXXX                                    XXXXXXXXXXXXXXXXXWSLASSV TAHGSSEFVT   XXXXXXXX  GWVATGGTDWSVRLWDVVKSRELGRLSFMGHSH VRSLACSSDGNLLVSGGDDHKVIVWSPQSRR +ATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVATLRGEVAAA   S+ +  SSLS AFSSGVSVVEREGSLQGGLAGARSRGESGRWEGET GATMLNAVNCLAAGGAGS GDWLFAAGETVVRSWRRRDG+WHGGAGLPG+GLGGIASLSVIE
Sbjct:   25 RPDDDRSRRDDDVAVVIGQLVPAPALPAYAVSATSRATPDRTPWAATSRGPSSSPSYAAPVMHNSTGSFSVAGTSTSGGXXXXXXRRGSSGGPVAGXXXXXXXVEEDSASAAAAGG-EGTYMPVMTHTGMHNVPGCGIASSTGGRRFGEGAPATTAAARGAPFALEGGG-----GSLPMKDGDYVADGGPVLVACGQGKSMYKVKGCISSWVLVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSNQSWALRSEDNPAGDGGVMCSACVPSIASGQSSGTLITGGKDSVLREWEIAEGRPRLVAHISGHTDWISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKSAAXXXXXXXXXXXXXXX---------------------------XXXXXXXXXXXXXXXXXXXXXXWSLASSVATAHGSSEFVTXXXXXXXXXXXAAGWVATGGTDWSVRLWDVVKSRELGRLSFMGHSHQVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRVVATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVATLRGEVAAA---SAAAAPSSLSGAFSSGVSVVEREGSLQGGLAGARSRGESGRWEGETAGATMLNAVNCLAAGGAGSCGDWLFAAGETVVRSWRRRDGIWHGGAGLPGEGLGGIASLSVIE 671          
BLAST of mRNA_E-siliculosus-1a_M_contig9.17004.1 vs. uniprot
Match: D7G1I6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I6_ECTSI)

HSP 1 Score: 669 bits (1727), Expect = 2.500e-232
Identity = 428/575 (74.43%), Postives = 436/575 (75.83%), Query Frame = 1
Query:  364 IPVMTHTGTQNVPGCGTASSTGGRRFGEGAPATTXXXXXXXXXXXXXXXXXXXGSLPMEDGDYVADGGPVLVACGQGKSMYNVKGCMSSWVLVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSSQSWALRSEDNPAGDGGVMCSACVPSIASG-------------QASGTLITGGKDSVLREWEIAEGRPRLVANISGHTDWISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKSAAAAAEAXXXXXXSDALAKESAQGKRKSSLRAAFASGSRSSSGRDLGSGXXXXXXXXXXXXXXXXXWSLASSVTTAHGSSEFVTCCAXXXXXXXXXXGWVATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVATLRGEVAAAADPSSLSEASSLSEAFSSGVSVVEREGSLQGGLAGARSRGESGRWEGETTGATMLNAVNCLAAGGAGSGGDWLFAAGETVVRSWRRRDGVWHGGAGLPGKGLGGIASLSVIE 2049
            +PVMTHTGT+NVPGCGTASSTGGRRFGEGAPATTXXXXXXXXXXXXXXXXXXXGSLPM+DGDYVADGGPVLVACGQGKSMYNVKGCMSSWVLVG                                             G GG    A    +A+              QASGTLITGGKDSVLREWEIAEGRPRLVA+ISGHTDWIS                             HKS AAAAEA      SDALAKESAQGKRKSSLRAAFASGSRSSSGRDLGSGXXXXXXXXXXXXXXXXX                     XXXXXXXXX GWVATGGTDWSVRLWDVVK RELGRLSFMGHSHPVRSLACSSDG LLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVA LRGEV AA DPSS      LSEAFSSG+SV EREG LQGGLAGARSRGESGRWEGETTGATMLNAVNCLAAGGAGSGGDWLFAAGETVVRSWRRRDGVWHGGAGLPG+GLGGIASLSVIE
Sbjct:    1 MPVMTHTGTKNVPGCGTASSTGGRRFGEGAPATTXXXXXXXXXXXXXXXXXXXGSLPMKDGDYVADGGPVLVACGQGKSMYNVKGCMSSWVLVG---------------------------------------------GGGGEQPDAVKEKMATXXXXXXXXXXXXXXQASGTLITGGKDSVLREWEIAEGRPRLVAHISGHTDWISCCALVPSATAGVAPSVAVSGGRDASVRFWHKSDAAAAEAAAARAASDALAKESAQGKRKSSLRAAFASGSRSSSGRDLGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXGGWVATGGTDWSVRLWDVVKFRELGRLSFMGHSHPVRSLACSSDGKLLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVAILRGEVTAA-DPSS------LSEAFSSGMSVAEREGGLQGGLAGARSRGESGRWEGETTGATMLNAVNCLAAGGAGSGGDWLFAAGETVVRSWRRRDGVWHGGAGLPGEGLGGIASLSVIE 520          
BLAST of mRNA_E-siliculosus-1a_M_contig9.17004.1 vs. uniprot
Match: A0A1Y2EVM9_9BASI (Uncharacterized protein n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2EVM9_9BASI)

HSP 1 Score: 74.3 bits (181), Expect = 8.360e-10
Identity = 38/106 (35.85%), Postives = 54/106 (50.94%), Query Frame = 1
Query: 1339 WVATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVW 1656
            WVA+GG D  +RLWDV + R    L        V SLA +  G+LL +G  +  V VW P+SRR +A L  H   V GV +      G+  +W+ S   +  + +W
Sbjct:  304 WVASGGFDRKIRLWDVGEGRASSVLELPSPPASVYSLATTPSGSLLAAGTPERVVRVWDPRSRRQVARLSGHTDNVRGVLI------GEEGKWLLSASSDSTVKLW 403          
BLAST of mRNA_E-siliculosus-1a_M_contig9.17004.1 vs. uniprot
Match: A0A524L7R5_THOAR (WD40 repeat domain-containing protein n=1 Tax=Thorarchaeota archaeon (strain OWC) TaxID=2053491 RepID=A0A524L7R5_THOAR)

HSP 1 Score: 68.6 bits (166), Expect = 1.850e-8
Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = 1
Query: 1342 VATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGD-DHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWD 1659
            + +GG D ++RLWD    +EL +  F+GH  PV ++    DG  LVS  D D  V +W  Q    +++L  +++ V  VAV P        R++ +GG +GF  +WD
Sbjct:   36 IISGGQDATIRLWDFASGKELHK--FVGHEGPVYNMVMMQDGKHLVSIADKDLAVKIWDIQKHELVSSLAPNSAHVTAVAVSPDQ------RYLVTGGEDGFARIWD 134          
BLAST of mRNA_E-siliculosus-1a_M_contig9.17004.1 vs. uniprot
Match: UPI00053FFA0A (DENN domain and WD repeat-containing protein SCD1 isoform X1 n=3 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FFA0A)

HSP 1 Score: 68.2 bits (165), Expect = 6.420e-8
Identity = 41/113 (36.28%), Postives = 59/113 (52.21%), Query Frame = 1
Query: 1336 GWVATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFG 1674
            G+  +G TD SVR+WD  +     R +  GH+  VR++  SSD   +VSG DDH ++VW  Q   PL  LK H   +  V +     SGD+   + S   +G + +WD R  G
Sbjct:  917 GFFISGSTDCSVRIWDPSRRGSELRATLRGHTGAVRAI--SSDRWKVVSGSDDHSILVWDKQQFIPLEELKGHEGQISCVRM----LSGDS---VLSSSHDGTVKMWDARTGG 1020          
BLAST of mRNA_E-siliculosus-1a_M_contig9.17004.1 vs. uniprot
Match: UPI000A3C1F0E (hypothetical protein n=1 Tax=Lentzea kentuckyensis TaxID=360086 RepID=UPI000A3C1F0E)

HSP 1 Score: 66.2 bits (160), Expect = 2.580e-7
Identity = 46/129 (35.66%), Postives = 67/129 (51.94%), Query Frame = 1
Query: 1342 VATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDHKVI-VWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVW--DPRNFGSPVATLRGEVAAAAD 1719
            +A+GG+D +VRLWDV   +++G     GH+  VR +A   DG  L S  D   V+ +W   SR PLA ++   S   G+AV PGT        IA+ G    + +W  DP +  S V ++ G   + AD
Sbjct: 1244 LASGGSDRTVRLWDVATRKQIGA-QLTGHNGVVRGVAFLPDGRTLASVSDYDLVLRLWDVPSRTPLAAVRGSGS-FDGIAVQPGT------GLIATAGLNNVVGIWNPDPASVKSQVCSILGGQQSVAD 1364          
BLAST of mRNA_E-siliculosus-1a_M_contig9.17004.1 vs. uniprot
Match: A0A497Q7I7_THOAR (Uncharacterized protein n=2 Tax=Thorarchaeota archaeon (strain OWC) TaxID=2053491 RepID=A0A497Q7I7_THOAR)

HSP 1 Score: 65.1 bits (157), Expect = 2.680e-7
Identity = 39/107 (36.45%), Postives = 57/107 (53.27%), Query Frame = 1
Query: 1342 VATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGD-DHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWD 1659
            + +GG D ++RLWDV   REL +L+  GH  PV  LA  +D   LVS  D D  V +WS      +++L  +++ V  VAV P  H      +I +G  +G +  WD
Sbjct:   63 IISGGQDATIRLWDVGTGRELQKLT--GHEGPVYGLAVMADNQRLVSIADKDLAVKIWSLDDYALISSLAPNSAHVKTVAVSPDQH------YIVTGSADGIVRFWD 161          
BLAST of mRNA_E-siliculosus-1a_M_contig9.17004.1 vs. uniprot
Match: A0A5R9FQU6_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces montanus TaxID=2580423 RepID=A0A5R9FQU6_9ACTN)

HSP 1 Score: 65.5 bits (158), Expect = 3.650e-7
Identity = 41/126 (32.54%), Postives = 63/126 (50.00%), Query Frame = 1
Query: 1342 VATGGTDWSVRLWDVVKSRELGRLSFMGHSHPVRSLACSSDG---NLLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVATLRGEVAA 1710
            +A  G D++VRLWD+ + R L +     H + VR++A +SDG   +   SG  D  V +W+     P   L      ++ VA++ GT     P ++ASGG +  + +WD R        LRG  AA
Sbjct:  579 LAISGDDFTVRLWDLDRERPLQQWR---HPYTVRTVAAASDGVSADWFASGSADGTVRLWAATDHAPKKVLYCRQGIINAVAINTGTSP--LPPFLASGGDDRTVRIWDLRTLEPIGEPLRGHTAA 699          
BLAST of mRNA_E-siliculosus-1a_M_contig9.17004.1 vs. uniprot
Match: A0A199VEU0_ANACO (DENN domain and WD repeat-containing protein SCD1 n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A199VEU0_ANACO)

HSP 1 Score: 65.5 bits (158), Expect = 4.270e-7
Identity = 39/111 (35.14%), Postives = 61/111 (54.95%), Query Frame = 1
Query: 1336 GWVATGGTDWSVRLWDV-VKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPR 1665
            G+  +G TD  V++WD  ++  EL R +  GH+ P+R++  +SD + +VSG DDH VIVW  Q+ R L  LK H + V  V +  G         + +   +G + +WD R
Sbjct:  884 GFFISGSTDCLVKVWDPSMRGSEL-RATLRGHTRPIRAI--NSDRSKIVSGSDDHSVIVWDKQTFRLLEELKGHDAPVSCVRMLSGER-------VLTASHDGTVKMWDVR 984          
BLAST of mRNA_E-siliculosus-1a_M_contig9.17004.1 vs. uniprot
Match: A0A804ITL0_MUSAM (UDENN domain-containing protein n=4 Tax=Musa TaxID=4640 RepID=A0A804ITL0_MUSAM)

HSP 1 Score: 64.7 bits (156), Expect = 7.410e-7
Identity = 37/111 (33.33%), Postives = 61/111 (54.95%), Query Frame = 1
Query: 1336 GWVATGGTDWSVRLWDV-VKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPR 1665
            G+  +G TD  V++WD  ++  EL R +  GH+ P+R++  +SD + +VSG DDH +IVW  Q+ + L  LK H + V  V +  G         + +   +G + +WD R
Sbjct:  885 GFFISGSTDCLVKIWDPSLRGSEL-RATLKGHTRPIRAI--NSDRSKVVSGSDDHSIIVWDKQTSQLLEELKGHEAPVSCVRMLSGER-------VLTAAHDGTVKMWDVR 985          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3X8_9PHAE1.860e-28681.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1I6_ECTSI2.500e-23274.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Y2EVM9_9BASI8.360e-1035.85Uncharacterized protein n=1 Tax=Leucosporidium cre... [more]
A0A524L7R5_THOAR1.850e-834.58WD40 repeat domain-containing protein n=1 Tax=Thor... [more]
UPI00053FFA0A6.420e-836.28DENN domain and WD repeat-containing protein SCD1 ... [more]
UPI000A3C1F0E2.580e-735.66hypothetical protein n=1 Tax=Lentzea kentuckyensis... [more]
A0A497Q7I7_THOAR2.680e-736.45Uncharacterized protein n=2 Tax=Thorarchaeota arch... [more]
A0A5R9FQU6_9ACTN3.650e-732.54Uncharacterized protein n=1 Tax=Streptomyces monta... [more]
A0A199VEU0_ANACO4.270e-735.14DENN domain and WD repeat-containing protein SCD1 ... [more]
A0A804ITL0_MUSAM7.410e-733.33UDENN domain-containing protein n=4 Tax=Musa TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:929512..934181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1869
Model size2461
Exons6
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.B
EggNOG OGsKOG0266@1,KOG0266@2759
EggNOG free text desc.WD repeat-containing protein
Seed eggNOG ortholog2880.D7G1I6
Seed ortholog evalue4.1e-190
Seed ortholog score671.4
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.17004.1prot_E-siliculosus-1a_M_contig9.17004.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 929921..933998 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936390.7152476-UTR-E-siliculosus-1a_M_contig9:929511..9299201622936390.7152476-UTR-E-siliculosus-1a_M_contig9:929511..929920Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 929512..929920 -
1696251056.470366-UTR-E-siliculosus-1a_M_contig9:929511..9299201696251056.470366-UTR-E-siliculosus-1a_M_contig9:929511..929920Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 929512..929920 -
1622936390.8181117-UTR-E-siliculosus-1a_M_contig9:933998..9341811622936390.8181117-UTR-E-siliculosus-1a_M_contig9:933998..934181Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 933999..934181 -
1696251056.5608587-UTR-E-siliculosus-1a_M_contig9:933998..9341811696251056.5608587-UTR-E-siliculosus-1a_M_contig9:933998..934181Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 933999..934181 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936390.7288585-CDS-E-siliculosus-1a_M_contig9:929920..9304721622936390.7288585-CDS-E-siliculosus-1a_M_contig9:929920..930472Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 929921..930472 -
1696251056.485872-CDS-E-siliculosus-1a_M_contig9:929920..9304721696251056.485872-CDS-E-siliculosus-1a_M_contig9:929920..930472Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 929921..930472 -
1622936390.742582-CDS-E-siliculosus-1a_M_contig9:930905..9310371622936390.742582-CDS-E-siliculosus-1a_M_contig9:930905..931037Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 930906..931037 -
1696251056.5012994-CDS-E-siliculosus-1a_M_contig9:930905..9310371696251056.5012994-CDS-E-siliculosus-1a_M_contig9:930905..931037Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 930906..931037 -
1622936390.7577183-CDS-E-siliculosus-1a_M_contig9:931369..9318081622936390.7577183-CDS-E-siliculosus-1a_M_contig9:931369..931808Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 931370..931808 -
1696251056.512469-CDS-E-siliculosus-1a_M_contig9:931369..9318081696251056.512469-CDS-E-siliculosus-1a_M_contig9:931369..931808Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 931370..931808 -
1622936390.7706294-CDS-E-siliculosus-1a_M_contig9:932244..9324401622936390.7706294-CDS-E-siliculosus-1a_M_contig9:932244..932440Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 932245..932440 -
1696251056.523898-CDS-E-siliculosus-1a_M_contig9:932244..9324401696251056.523898-CDS-E-siliculosus-1a_M_contig9:932244..932440Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 932245..932440 -
1622936390.783914-CDS-E-siliculosus-1a_M_contig9:932966..9331881622936390.783914-CDS-E-siliculosus-1a_M_contig9:932966..933188Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 932967..933188 -
1696251056.535521-CDS-E-siliculosus-1a_M_contig9:932966..9331881696251056.535521-CDS-E-siliculosus-1a_M_contig9:932966..933188Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 932967..933188 -
1622936390.8024344-CDS-E-siliculosus-1a_M_contig9:933670..9339981622936390.8024344-CDS-E-siliculosus-1a_M_contig9:933670..933998Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 933671..933998 -
1696251056.547249-CDS-E-siliculosus-1a_M_contig9:933670..9339981696251056.547249-CDS-E-siliculosus-1a_M_contig9:933670..933998Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 933671..933998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.17004.1

>prot_E-siliculosus-1a_M_contig9.17004.1 ID=prot_E-siliculosus-1a_M_contig9.17004.1|Name=mRNA_E-siliculosus-1a_M_contig9.17004.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=623bp
MHNSTGSFSVAGTSTSGGARSGGLRRRGSGGSVAGGKARGGGVEGDSAAA
AAAGGGEGTYIPVMTHTGTQNVPGCGTASSTGGRRFGEGAPATTAAGGAR
QSRGAPFAPARGGGSLPMEDGDYVADGGPVLVACGQGKSMYNVKGCMSSW
VLVGGGGGEQPDAVKEKMAAAAGGGAGGGGAGGAPSSQSWALRSEDNPAG
DGGVMCSACVPSIASGQASGTLITGGKDSVLREWEIAEGRPRLVANISGH
TDWISCCALVPSATAGVAPSVAVSGGRDASVRFWHKSAAAAAEAAAARAA
SDALAKESAQGKRKSSLRAAFASGSRSSSGRDLGSGGGGGGGGGGLVPPG
DGGWSLASSVTTAHGSSEFVTCCASPGGSSGAAGGWVATGGTDWSVRLWD
VVKSRELGRLSFMGHSHPVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRP
LATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPV
ATLRGEVAAAADPSSLSEASSLSEAFSSGVSVVEREGSLQGGLAGARSRG
ESGRWEGETTGATMLNAVNCLAAGGAGSGGDWLFAAGETVVRSWRRRDGV
WHGGAGLPGKGLGGIASLSVIE*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig9:929512..934181-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.17004.1 ID=mRNA_E-siliculosus-1a_M_contig9.17004.1|Name=mRNA_E-siliculosus-1a_M_contig9.17004.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4670bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:929512..934181- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CGACAGGACGATGACCGAAACAGGAAAGACGACGACGTCGCCGTCGTAGT CGGACAGCTCGTTCCTGCCCCGACGCTAACCGCCTACGCGGTATCAGCAA CGTCAAGGACAACCCCCGACAACACTCTCTGGGCGGCCACCGCGCGGGGA CCTTCATCTTCTTCCTCGTACGCAGCACCGGTCATGCACAACAGCACGGG CTCTTTCAGCGTCGCTGGGACCAGCACTTCGGGGGGAGCCCGCAGCGGCG GCCTTAGACGTCGTGGCAGCGGTGGCTCGGTCGCGGGAGGGAAAGCACGC GGAGGTGGCGTTGAGGGAGACTCTGCTGCTGCTGCTGCTGCTGGTGGCGG GGAAGGGACGTACATACCGGTGATGACACACACAGGGACGCAGAACGTCC CCGGCTGCGGTACCGCCAGCAGCACGGGGGGGAGGCGTTTCGGGGAGGGG GCGCCGGCGACGACGGCCGCCGGCGGTGCCAGGCAATCTCGCGGCGCTCC GTTTGCGCCGGGTGAGCAGGAAGGAGGCTGCTATTAGTGCCGAGGGTGCA TAGAGAAAAACATAGAGAGAAAAACATTTGTGATGGGCGTTGTAGCACAA TTTTGCTTTTTATTTGTCTGTTGTTTACAATGGTGTGGGTGCTCAGCCTC AGAAGTAGTTAGGCGACTTTTCCCAATGAACGAGTCTTAGGGCGACCAAG AAATAGCTTCATCGAGGTGGTTCTCGAACAGTTTTGCCCTCCTTCGAAGG GGCCGCCGCCGGTCTCTCGCGCACTCCTCCTGCGCGGGTGCGTCGACATG CTCTAGATCGATCGCCCTCTGTGGAGGGTCTCCCTTCCGTGCACGAAACC CATCCCGGAGTCACTCATAACGCAAAGGAATGCAACGCAGATATCAGAGC GGGTTGTCTGAGCCTAAACGTGCCACCTCAGCAAGCATATCCTTCTTTTT TTTTTCTCTCGTGGACGCACGTCTCTACTTCCGAACACGGCAGCAAGAGG CGGGGGATCCTTGCCGATGGAGGACGGAGACTACGTGGCCGACGGGGGGC CCGTGCTCGTCGCGTGCGGACAGGGGAAGTCGATGTACAACGTCAAGGGG TGCATGTCCTCGTGGGTACTCGTTGGCGGTGGCGGCGGCGAGCAACCAGA CGCCGTAAAAGAAAAAATGGCAGCAGCAGCCGGAGGTGGCGCCGGGGGGG GGGGCGCAGGAGGAGGTAAGGGGAGATGTTCAAGCTTTTGGCGATGTTCA CCCGTGGTGGGTCAGGCGTTTTCCTCCTATATGGTCGATGCCAGTCCTTT TTTCCAAAATCTAATAGCAAATTTACAGGCTGACCAGCCTACGGTGACCG GGAAACCATGGTGTTTACTATCCCGCATTCAAAGACTTGGACAAGTGTGT GATCCGTTTTTCGCTGTGTAGTCTGGGTTGACACACCTTTGTTCCACGCC TCCTACCGATGCCTATTGTCGATGGCTGCACGCCCGACTGCATCTAGAAG GAACCGGTATTGCTGCCATTATTTTTTGTGGTGGTGGTGGTGTTGATTGC TATTTATCTCGGGCCTGTTCGTGTAAGTAAGAAGGCTCCTCTGAGCAATG CTTTTGTTTTTAACGCCTGTTGCGGTAGCCCTTACTGCATTCGACGACAT CACCCTTCTCGATGACGCAACAATATATAACACGCAGCCAATCGTCTTGG GGAGATAATCTAACATGCATAAGCACGTTTCCGACGCCCAGCCCCCAGCA GCCAATCCTGGGCACTTCGGTCCGAGGACAACCCGGCCGGAGACGGCGGC GTGATGTGCTCGGCGTGCGTCCCGTCGATCGCATCAGGGCAAGCGTCGGG CACGCTCATCACGGGGGGGAAGGACAGCGTTCTGAGGGAGTGGGAGATCG CGGAGGGACGCCCGCGCCTGGTGGCCAACATCTCGGGGTAAGCGTAGGCA GCTTCGCCTCCTTCCCAGCGCTATGCTCCTCCCCGTGGTAGTGCCAAGGG CAGGCGTTTAATTGACCGCCGCGTAGCAATAGTGAGCCGGGAGCTCTGGA GCATCTACAGCGCGCTTCTGTTGGCCAGCCCTCGTCGTAAAGGCATGCGA TGTTGATATTCTCATCCTCGCTCTGAGTAACCCTTGCCGGACGGCGCCAG CCACCGTGCCCCCCACGCCCCCTCACCATCTCATGCTCTTTTCGACCTTC TTCGTACCACTCCTCCAACATCACCATTTGCTCATGGTTGACACCAGCCC ACACACCACCAGCGGAGTGCACTCACCCCCCTGCATGCCGCAGCCTACAT CCGTCTCACTCTCCCCCCTGCCCCCCCGCTCGAGCTAAGTACCCACCCTA ATCACACACACACCCCCCCCCAGGCACACCGACTGGATCTCCTGCTGCGC TCTCGTTCCCTCCGCGACCGCCGGCGTCGCCCCCTCGGTCGCGGTGTCCG GCGGGCGGGACGCGTCCGTTCGCTTCTGGCACAAGTCCGCCGCCGCCGCC GCGGAGGCCGCCGCCGCCCGAGCGGCATCGGACGCCCTGGCCAAAGAGTC CGCCCAGGGCAAGAGGAAGTCGTCGCTCCGGGCGGCGTTCGCGAGCGGTA GCCGCAGCTCCAGCGGTAGAGATCTGGGAAGCGGGGGCGGCGGGGGCGGC GGGGGCGGTGGTCTTGTGCCGCCGGGCGATGGCGGGTGGTCGCTGGCTTC CTCCGTGACCACGGCGCACGGGTCATCCGAGTTCGTCACGTGCTGTGCTT CCCCCGGTGGGTCCTCGGGAGCGGCGGGGGGCTGGGTGGCGACCGGGGGC ACCGATTGGTCGGTAAGTGGGAGGCCTACTGCGTTTGGGCGTCGTCTACA TGAGTTACGCGATGGGGGTTTGATCCATCCGTTGGACACGTTTGTGGCTA CGGTTGAGTTTGCTTCAGAGCTCGACGTCGTCTCCAAACACAATCAGCTT TCGCTGCAGTGCTCTCGTGGTTATGGTGTCATGCGTTTCCGACAAAGTTG ACACTACTGCTGTAGTTTCGTTCCTTGTGTTAACGCCAAACCTCGGCGCT TGAAAATGCTCTCCACTGCACCTACTGTACGCTATCATCGTTGTCGAAGA AGTGCCTTAAGAACAGCGCCCGTGATTTCCCCCTCTGTACGCAGGTTCGA CTGTGGGACGTCGTCAAGTCCCGTGAGTTGGGCAGGCTGTCCTTCATGGG CCACAGCCACCCGGTTCGTTCGCTGGCGTGCTCCTCCGACGGAAACCTTC TCGTGAGCGGGGGCGACGACCACAAGGTATGCTCCTTCCGCCTCTTTGGC ATTTTATTATGTTGCATCCTCGGATACATTTTGGCATTTAGCGTCTCGGC GCCGTACTCTATACAGCCATCTCATGGCGTACATCGCGAACAATACGTAG CTGTGGTCGTGAGATTGGAACACCCAAACAAATCATGGTGATTCCTTATT AAAGTAGGAGGTTCTAGGATTTATGCGCCAAGTGCCCACCTCGGCGTCAT GGACGGTCCCCAGGGAAACAGACGCGCCCTCAATGGCAACTCGTTGGACC CCTCAGGTCACGGCGACTCGCACTTGGTGCACTATATGCCGACCCGTTGA AAATCCCGATAATTTTGGTCGATTCCGGCTTTCAAAGGGGTCTAAGCACT CCGCACGATGCAAATGAGTACCCACCCCCGCCCCCCGGCCGGCCTACCCG ACGACCCAGGTCATCGTCTGGTCGCCTCAGAGCCGAAGACCCCTCGCGAC GCTCAAGAGCCACGCCAGCGCCGTTCACGGCGTCGCCGTGGACCCGGGGA CGCACTCCGGCGACGCCCCCCGCTGGATAGCCTCCGGCGGCGGCGAGGGC TTCCTCCTTGTGTGGGACCCCCGGAACTTCGGCTCCCCGGTCGCGACCCT CCGCGGAGAGGTGGCCGCCGCCGCGGACCCGTCCTCCTTGTCGGAGGCGT CCTCCTTGTCGGAGGCGTTCTCCTCCGGCGTGTCCGTCGTCGAGCGGGAG GGAAGCCTGCAGGGAGGGCTTGCCGGGGCGAGGTCGAGGGGGGAGAGCGG CCGGTGGGAGGGGGAGACCACGGGCGCCACGATGCTGAACGCCGTGAACT GCCTCGCGGCCGGCGGCGCCGGGAGCGGCGGGGACTGGCTGTTCGCCGCC GGGGAGACGGTCGTCCGGTCTTGGCGCCGGAGGGACGGGGTCTGGCACGG CGGGGCCGGGCTCCCCGGCAAGGGGCTGGGGGGAATCGCGAGCCTGTCGG TGATCGAGTAAAGTTTTTCATGGTACGGATGAAGGGCGGACGTTGCTCGC CTCTCGGCGGTCGAGTAGGAATTTTCGTGGTACAGAAGGATCAGGAGGGC GGGCGTGATGATGTCACCGCGAGCTTCGCGCGGGTGCGGTGTGGTTGGGG CGGGGAGTGGTGTCGCTACGGCAACGGGGAGTTAAATGGGTCTCGGTGAA CGGCTTTGGGGCCGCGACCATCATGTTTATTGTTGTGGGAATGTATACAT TTGTGTCTCGGTGGTGTTTTGAGTACAAACTCGCACATGACGCACGCATG GGTGTGTAGACCTCCCCTTGTATGGACGCAGCGTGGAGGCGGGCCGTCAT AATACCTCTGGATGAAACAGGACGAAAACACGCCCCAGACGTAAGTCCGT ACGTACCTTGGGAAGTCGCG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:929512..934181-

>mRNA_E-siliculosus-1a_M_contig9.17004.1 ID=mRNA_E-siliculosus-1a_M_contig9.17004.1|Name=mRNA_E-siliculosus-1a_M_contig9.17004.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3738bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:929512..934181- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCACAACAGCACGGGCTCTTTCAGCGTCGCTGGGACCAGCACTTCGGG
GGGAGCCCGCAGCGGCGGCCTTAGACGTCGTGGCAGCGGTGGCTCGGTCG
CGGGAGGGAAAGCACGCGGAGGTGGCGTTGAGGGAGACTCTGCTGCTGCT
GCTGCTGCTGGTGGCGGGGAAGGGACGTACATACCGGTGATGACACACAC
AGGGACGCAGAACGTCCCCGGCTGCGGTACCGCCAGCAGCACGGGGGGGA
GGCGTTTCGGGGAGGGGGCGCCGGCGACGACGGCCGCCGGCGGTGCCAGG
CAATCTCGCGGCGCTCCGTTTGCGCCGGATGCACAACAGCACGGGCTCTT
TCAGCGTCGCTGGGACCAGCACTTCGGGGGGAGCCCGCAGCGGCGGCCTT
AGACGTCGTGGCAGCGGTGGCTCGGTCGCGGGAGGGAAAGCACGCGGAGG
TGGCGTTGAGGGAGACTCTGCTGCTGCTGCTGCTGCTGGTGGCGGGGAAG
GGACGTACATACCGGTGATGACACACACAGGGACGCAGAACGTCCCCGGC
TGCGGTACCGCCAGCAGCACGGGGGGGAGGCGTTTCGGGGAGGGGGCGCC
GGCGACGACGGCCGCCGGCGGTGCCAGGCAATCTCGCGGCGCTCCGTTTG
CGCCGGCAAGAGGCGGGGGATCCTTGCCGATGGAGGACGGAGACTACGTG
GCCGACGGGGGGCCCGTGCTCGTCGCGTGCGGACAGGGGAAGTCGATGTA
CAACGTCAAGGGGTGCATGTCCTCGTGGGTACTCGTTGGCGGTGGCGGCG
GCGAGCAACCAGACGCCGTAAAAGAAAAAATGGCAGCAGCAGCCGGAGGT
GGCGCCGGGGGGGGGGGCGCAGGAGGAGCAAGAGGCGGGGGATCCTTGCC
GATGGAGGACGGAGACTACGTGGCCGACGGGGGGCCCGTGCTCGTCGCGT
GCGGACAGGGGAAGTCGATGTACAACGTCAAGGGGTGCATGTCCTCGTGG
GTACTCGTTGGCGGTGGCGGCGGCGAGCAACCAGACGCCGTAAAAGAAAA
AATGGCAGCAGCAGCCGGAGGTGGCGCCGGGGGGGGGGGCGCAGGAGGAG
CCCCCAGCAGCCAATCCTGGGCACTTCGGTCCGAGGACAACCCGGCCGGA
GACGGCGGCGTGATGTGCTCGGCGTGCGTCCCGTCGATCGCATCAGGGCA
AGCGTCGGGCACGCTCATCACGGGGGGGAAGGACAGCGTTCTGAGGGAGT
GGGAGATCGCGGAGGGACGCCCGCGCCTGGTGGCCAACATCTCGGGCCCC
CAGCAGCCAATCCTGGGCACTTCGGTCCGAGGACAACCCGGCCGGAGACG
GCGGCGTGATGTGCTCGGCGTGCGTCCCGTCGATCGCATCAGGGCAAGCG
TCGGGCACGCTCATCACGGGGGGGAAGGACAGCGTTCTGAGGGAGTGGGA
GATCGCGGAGGGACGCCCGCGCCTGGTGGCCAACATCTCGGGGCACACCG
ACTGGATCTCCTGCTGCGCTCTCGTTCCCTCCGCGACCGCCGGCGTCGCC
CCCTCGGTCGCGGTGTCCGGCGGGCGGGACGCGTCCGTTCGCTTCTGGCA
CAAGTCCGCCGCCGCCGCCGCGGAGGCCGCCGCCGCCCGAGCGGCATCGG
ACGCCCTGGCCAAAGAGTCCGCCCAGGGCAAGAGGAAGTCGTCGCTCCGG
GCGGCGTTCGCGAGCGGTAGCCGCAGCTCCAGCGGTAGAGATCTGGGAAG
CGGGGGCGGCGGGGGCGGCGGGGGCGGTGGTCTTGTGCCGCCGGGCGATG
GCGGGTGGTCGCTGGCTTCCTCCGTGACCACGGCGCACGGGTCATCCGAG
TTCGTCACGTGCTGTGCTTCCCCCGGTGGGTCCTCGGGAGCGGCGGGGGG
CTGGGTGGCGACCGGGGGCACCGATTGGTCGGCACACCGACTGGATCTCC
TGCTGCGCTCTCGTTCCCTCCGCGACCGCCGGCGTCGCCCCCTCGGTCGC
GGTGTCCGGCGGGCGGGACGCGTCCGTTCGCTTCTGGCACAAGTCCGCCG
CCGCCGCCGCGGAGGCCGCCGCCGCCCGAGCGGCATCGGACGCCCTGGCC
AAAGAGTCCGCCCAGGGCAAGAGGAAGTCGTCGCTCCGGGCGGCGTTCGC
GAGCGGTAGCCGCAGCTCCAGCGGTAGAGATCTGGGAAGCGGGGGCGGCG
GGGGCGGCGGGGGCGGTGGTCTTGTGCCGCCGGGCGATGGCGGGTGGTCG
CTGGCTTCCTCCGTGACCACGGCGCACGGGTCATCCGAGTTCGTCACGTG
CTGTGCTTCCCCCGGTGGGTCCTCGGGAGCGGCGGGGGGCTGGGTGGCGA
CCGGGGGCACCGATTGGTCGGTTCGACTGTGGGACGTCGTCAAGTCCCGT
GAGTTGGGCAGGCTGTCCTTCATGGGCCACAGCCACCCGGTTCGTTCGCT
GGCGTGCTCCTCCGACGGAAACCTTCTCGTGAGCGGGGGCGACGACCACA
AGGTTCGACTGTGGGACGTCGTCAAGTCCCGTGAGTTGGGCAGGCTGTCC
TTCATGGGCCACAGCCACCCGGTTCGTTCGCTGGCGTGCTCCTCCGACGG
AAACCTTCTCGTGAGCGGGGGCGACGACCACAAGGTCATCGTCTGGTCGC
CTCAGAGCCGAAGACCCCTCGCGACGCTCAAGAGCCACGCCAGCGCCGTT
CACGGCGTCGCCGTGGACCCGGGGACGCACTCCGGCGACGCCCCCCGCTG
GATAGCCTCCGGCGGCGGCGAGGGCTTCCTCCTTGTGTGGGACCCCCGGA
ACTTCGGCTCCCCGGTCGCGACCCTCCGCGGAGAGGTGGCCGCCGCCGCG
GACCCGTCCTCCTTGTCGGAGGCGTCCTCCTTGTCGGAGGCGTTCTCCTC
CGGCGTGTCCGTCGTCGAGCGGGAGGGAAGCCTGCAGGGAGGGCTTGCCG
GGGCGAGGTCGAGGGGGGAGAGCGGCCGGTGGGAGGGGGAGACCACGGGC
GCCACGATGCTGAACGCCGTGAACTGCCTCGCGGCCGGCGGCGCCGGGAG
CGGCGGGGACTGGCTGTTCGCCGCCGGGGAGACGGTCGTCCGGTCTTGGC
GCCGGAGGGACGGGGTCTGGCACGGCGGGGCCGGGCTCCCCGGCAAGGGG
CTGGGGGGAATCGCGAGCCTGTCGGTGATCGAGTAAGTCATCGTCTGGTC
GCCTCAGAGCCGAAGACCCCTCGCGACGCTCAAGAGCCACGCCAGCGCCG
TTCACGGCGTCGCCGTGGACCCGGGGACGCACTCCGGCGACGCCCCCCGC
TGGATAGCCTCCGGCGGCGGCGAGGGCTTCCTCCTTGTGTGGGACCCCCG
GAACTTCGGCTCCCCGGTCGCGACCCTCCGCGGAGAGGTGGCCGCCGCCG
CGGACCCGTCCTCCTTGTCGGAGGCGTCCTCCTTGTCGGAGGCGTTCTCC
TCCGGCGTGTCCGTCGTCGAGCGGGAGGGAAGCCTGCAGGGAGGGCTTGC
CGGGGCGAGGTCGAGGGGGGAGAGCGGCCGGTGGGAGGGGGAGACCACGG
GCGCCACGATGCTGAACGCCGTGAACTGCCTCGCGGCCGGCGGCGCCGGG
AGCGGCGGGGACTGGCTGTTCGCCGCCGGGGAGACGGTCGTCCGGTCTTG
GCGCCGGAGGGACGGGGTCTGGCACGGCGGGGCCGGGCTCCCCGGCAAGG
GGCTGGGGGGAATCGCGAGCCTGTCGGTGATCGAGTAA
back to top