mRNA_E-siliculosus-1a_M_contig9.17002.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.17002.1 vs. uniprot
Match: D7G1I8_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I8_ECTSI) HSP 1 Score: 297 bits (761), Expect = 2.010e-92 Identity = 161/210 (76.67%), Postives = 162/210 (77.14%), Query Frame = 1
Query: 1 HAAKEQFVDTMAVLANAGVVDTGIALIGAIKENRERSIKFLLRQQQLQGKPTGAYVDEARDPFGRTPLLCSIEDEGDRWCFPRIVRMIIDAGADTTSAVRVSKLGFLPVEETPLGLVDHYLGENRVIGRDITEEQAHNLNAVHRLLLRVEAVHAASWLWVSDSPDIAHTAEVTNRPMVTPSARSRMLPVLGLSTRRNALLPAVLRYSSKT 630
HAAKEQFVDTMAVLANAGVVDTGIALIGAIKENRE SIKFLLRQQQLQG PTGAYVDEARDPFGRTPLLCSIEDEG LVDHYLGENRVIGRDITEEQAH LNAVHRLLLRVEAVHAASWLWVSD+PDIAHTAEVT R VTPS RSRM PVLGLSTRRNALL AVLRYSSKT
Sbjct: 224 HAAKEQFVDTMAVLANAGVVDTGIALIGAIKENREGSIKFLLRQQQLQGNPTGAYVDEARDPFGRTPLLCSIEDEG---------------------------------------LVDHYLGENRVIGRDITEEQAHKLNAVHRLLLRVEAVHAASWLWVSDAPDIAHTAEVTKRTKVTPSPRSRMFPVLGLSTRRNALLSAVLRYSSKT 394
BLAST of mRNA_E-siliculosus-1a_M_contig9.17002.1 vs. uniprot
Match: A0A6H5JWZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWZ8_9PHAE) HSP 1 Score: 253 bits (645), Expect = 8.700e-76 Identity = 141/209 (67.46%), Postives = 153/209 (73.21%), Query Frame = 1
Query: 1 HAAKEQFVDTMAVLANAGVVDTGIALIGAIKENRERSIKFLLRQQQLQGKPTGAYVDEARDPFGRTPLLCSIEDEGDRWCFPRIVRMIIDAGADTTSAVRVSKLGFLPVEETPLGLVDHYLGENRVIGRDITEEQAHNLNAVHRLLLRVEAVHAASWLWVSDSPDIAHTAEVTNRPMVTPSARSRMLPVLGLSTRRNALLPAVLRYSSK 627
HAAKEQFVDTMAVLA AG+VDTGIALIGAIKEN E SIKFLLRQ +G P + +IEDEG RWCFPRIVRMI+DA ADTTSAVRV KLG LPV+ETPLGL AH L+AVHRLLLRVEA+HAASWLWVSD+PDIAHTAEVT R V P ARSRMLPVLGLSTRRNALL AVLR++ +
Sbjct: 158 HAAKEQFVDTMAVLATAGMVDTGIALIGAIKENLEGSIKFLLRQSSCKGNPP----------------VPTIEDEGGRWCFPRIVRMIVDAVADTTSAVRVLKLGLLPVKETPLGL-------------------AHKLSAVHRLLLRVEALHAASWLWVSDAPDIAHTAEVTKRTKVIPPARSRMLPVLGLSTRRNALLSAVLRWAGR 331
BLAST of mRNA_E-siliculosus-1a_M_contig9.17002.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI) HSP 1 Score: 149 bits (376), Expect = 6.760e-38 Identity = 97/224 (43.30%), Postives = 123/224 (54.91%), Query Frame = 1
Query: 16 QFVDTMAVLANAGVVDT-GIALIGAIKENRERSIKFLLRQQQLQGKPTGAYVDEARDPFGRTPLLCSIEDEGDRWCF---PRIVRMIIDAGADTTSAVRVSKL-GFLPVEETPLGLVDHYLGENRVIGRDITEEQAHNLNAVHRLLLRVEAVHAASWLWVSDSPDIAHTAEVTNRPMVTPSARSRMLPVLGLSTRRNALLPAVLRYSSKT*PPLSGESRIFASL 672
Q +D MA+L AGV D G L+G RE S++FLLRQ++ + + + + D G TPL CSIE WC PRIVR+++DAGADTTS VRV+ L G + +TPL + L E V G+ TEEQ H L A+ RLLLRV+AVHA SWLW SD+P I H E + P S LP+L + + A L SS P SG A L
Sbjct: 3 QHMDIMAILTGAGVRDAMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIE-----WCSSGNPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSLLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGPEPRRPPLSLTLPILKRRAKTCHVFVATLLRSS---PISSGRGSRRADL 218
BLAST of mRNA_E-siliculosus-1a_M_contig9.17002.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI) HSP 1 Score: 152 bits (385), Expect = 3.620e-37 Identity = 94/213 (44.13%), Postives = 124/213 (58.22%), Query Frame = 1
Query: 4 AAKEQFVDTMAVLANAGVVDTGIALIGAIKENRERSIKFLLRQQQLQGKPTGAYVDEARDPFGRTPLLCSIEDEGDRWCFPRIVRMIIDAGADTTSAVRVSKLG-FLPVEETPLGLVDHYLGENRVIGRDITEEQAHNLNAVHRLLLRVEAVHAASWLWVSDSPDIAHTAEVTN---RPMVTPSARSRMLPVLGLST-RRNALLPAVLRYSSK 627
AA EQ+VD M +L GVVDTG AL+ A + +RE S+KFLL+ Q G YV+ DPFGRTPL+C+IE G PRI R +ID GADT S V V++ G + +TPLG L +N+V G++ TEEQ +L A+HRLL ++EAVHA SWLW S I H + +P RM VL + +R +L AV R + +
Sbjct: 221 AATEQYVDIMGILTVGGVVDTGRALVVAAEYSREESVKFLLQHQAGGGT---WYVNNTLDPFGRTPLVCTIEACGSS--SPRIARFLIDDGADTKSTVLVTRSGEWTTSRDTPLGFATRSLRQNKVGGKNATEEQLRSLKAIHRLLSQIEAVHAVSWLWRSSDTPIGHAVGAASSRMKPTTAGPTLKRMSTVLRTTVGKRGVVLRAVYRAAEE 428
BLAST of mRNA_E-siliculosus-1a_M_contig9.17002.1 vs. uniprot
Match: A0A6H5K037_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K037_9PHAE) HSP 1 Score: 144 bits (364), Expect = 1.890e-34 Identity = 92/205 (44.88%), Postives = 117/205 (57.07%), Query Frame = 1
Query: 4 AAKEQFVDTMAVLANAGVVDTGIALIGAIKENRERSIKFLLRQQQLQGKPTGAYVDEARDPFGRTPLLCSIEDEGDRWCFPRIVRMIIDAGADTTSAVRVSKLG-FLPVEETPLGLVDHYLGENRVIGRDITEEQAHNLNAVHRLLLRVEAVHAASWLWVSDSPDIAHTAEVTNRPMVTPSARSRMLPVLGLSTRRNALLPAVLR 615
A EQ VD M +L GVVDTG AL+ A + +RE S+KFLL+ Q G YV+ DPFGRTPL+C+IE G PRI R +IDA ADT S V V+K G + +TPLG H L +N+V ++ TEEQ +L A+HRLL +V+AVHA SWLW S T +A SRM P + + +P VLR
Sbjct: 211 ATTEQDVDIMGILTVGGVVDTGRALVVAAENSREESVKFLLQHQAGGG---AWYVNNTLDPFGRTPLVCTIEACGSS--SPRIARFLIDAEADTKSTVLVTKSGQWTTSRDTPLGFATHSLRQNKVGRKNATEEQLRSLKAIHRLLSQVDAVHAVSWLWRSSD---------TRNSYAVGAASSRMKPTIAGPLLKR--MPTVLR 399
BLAST of mRNA_E-siliculosus-1a_M_contig9.17002.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI) HSP 1 Score: 142 bits (358), Expect = 1.820e-33 Identity = 90/216 (41.67%), Postives = 124/216 (57.41%), Query Frame = 1
Query: 4 AAKEQFVDTMAVLANAG-VVDTGIALIGAIKENRERSIKFLLRQQQLQGKPTGAYVDEARDPFGRTPLLCSIEDEGDRWCFPRIVRMIIDAGADTTSAVRVSKLG--FLPVEETPLGLVDHYLGENRVIGRDITEEQAHNLNAVHRLLLRVEAVHAASWLWVS-DSPDIAHTAEVTNRPMVTPSARSRMLPVLGLSTR----RNALLPAVLRYSSK 627
AA E+ ++ MAVL +AG VVDTG ALI A + R ++KFLLR++Q AYV+ RDP+GRTP++C+++ R C P+IVR+++DAGA+TT AV V+++ + ETPL L E RV G T+EQ L LL R EAVHA SWLW S + P IA A T + + + + + + R R LL + RYS K
Sbjct: 223 AADEEHLEFMAVLLDAGGVVDTGPALILAAENGRAVAVKFLLRRRQADAD---AYVNGTRDPYGRTPVMCAVDVGAGRLCSPKIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTRLLREGRVDGEAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDTKTETASTAVATPLRAMSPMLRRKPGTRGVLLKTLFRYSRK 435
BLAST of mRNA_E-siliculosus-1a_M_contig9.17002.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI) HSP 1 Score: 140 bits (354), Expect = 7.180e-33 Identity = 90/216 (41.67%), Postives = 118/216 (54.63%), Query Frame = 1
Query: 4 AAKEQFVDTMAVLANAGVVDTGIALIGAIKENRERSIKFLLRQQQLQGKPTGAYVDEARDPFGRTPLLCSIEDEGDRWCFPRIVRMIIDAGADTTSAVRVS-KLGFLPVEETPLGLVDHYLGENRVIGRDITEEQAHNLNAVHRLLLRVEAVHAASWLWVSDSPDIAHTA------EVTNRPMVTPSARSRMLPVLGLSTRRNALLPAVL-RYSSK 627
AA + +D M L AGVVDTGIAL+ A +KFLL+QQ AYV RDP GRTPL+C+I+ ++ C P++VR+++DAGADTTS VR + + G LPV TPL L L + I +E L + RLLLRVEAVHA SWLW + P + A E + P R+ +LP+L R + A L RY+ K
Sbjct: 224 AAMKPHMDVMLALTTAGVVDTGIALVKATSFGHMDVVKFLLQQQNGTPSEKSAYVSRPRDPCGRTPLICNIDVGLNQSCSPKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALRIKIAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTAATETESSSTTAPQLRT-VLPILRRRARGRGFVSASLCRYAVK 438
BLAST of mRNA_E-siliculosus-1a_M_contig9.17002.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI) HSP 1 Score: 139 bits (350), Expect = 7.850e-32 Identity = 98/217 (45.16%), Postives = 123/217 (56.68%), Query Frame = 1
Query: 4 AAKEQFVDTMAVLANAGVVDTGIALIGAIKENRERSIKFLLRQQQLQGK--PTGAYVDEARDPFGRTPLLCSIEDEGDRWCF---PRIVRMIIDAGADTTSAVRVSKL-GFLPVEETPLGLVDHYLGENRVI-GRDITEEQAHNLNAVHRLLLRVEAVHAASWLWVSDSPDIAHTAEVTNRPMVTPSARSRMLPVLGLSTRRNA-LLPAVLRYSSKT 630
AA Q +D MA+L AGVVDTG AL A E S+KFLLR + +G GAY++ ARD G TPL+ + CF PRIVRM++DAGADTTS V+V L G + +TPL L + V G+ T+E L A+ RLLLRV+AVHA SWLW S +P I E P + A MLP+L T+R L+ +LRYS KT
Sbjct: 319 AASNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRHRHKEGGCGVEGAYLN-ARDVNGYTPLVVCTQG-----CFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRATETDPEPPLP--ALKLMLPILKRRTKRRCGLVATLLRYSVKT 527
BLAST of mRNA_E-siliculosus-1a_M_contig9.17002.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI) HSP 1 Score: 132 bits (333), Expect = 2.840e-30 Identity = 86/206 (41.75%), Postives = 120/206 (58.25%), Query Frame = 1
Query: 22 VDTMAVLANAGVVD-TGIALIGAIKENRERSIKFLLRQQQLQGKPTGAYVDEARDPFGRTPLLCSIEDEGDRWCFPRIVRMIIDAGADTTSAVRV-SKLGFLPVEETPLGLVDHYLGENRVIGRDITEEQAHNLNAVHRLLLRVEAVHAASWLWVSDSPDIAHTAEVTNRPMVTPSARSRMLPVLGLSTRRNALL-PAVLRYSSKT 630
VD M++L +AGVVD G+AL+ A+ +E ++ FLLRQQ+ + + + YV+ ARD G T LL S ++ C PRI R ++DAGADTTSAV++ +K V TPL V+ + T+EQ L A R+LLRV AVHA SW+W SD+P +A A +P+ + +LPVL R ALL + RYS K+
Sbjct: 203 VDIMSMLMDAGVVDPVGLALLAAVGSGKEAAVGFLLRQQEERWQTS--YVNIARDDDGLTALLWSFRGNKNKPCNPRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLLARPANSPRTAKHSPTQLTTVLPVLRRRAGRRALLWDTLFRYSKKS 406
BLAST of mRNA_E-siliculosus-1a_M_contig9.17002.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI) HSP 1 Score: 129 bits (325), Expect = 4.870e-29 Identity = 87/216 (40.28%), Postives = 116/216 (53.70%), Query Frame = 1
Query: 4 AAKEQFVDTMAVLANAGVVDTGIALIGAIKENRERSIKFLLRQQQLQGKPTGAYVDEARDPFGRTPLLCSIEDEGDRWCFPRIVRMIIDAGADTTSAVRVSKLGFLPVEETPLGLVDHYLGENRVIGRDI-TEEQAHNLNAVHRLLLRVEAVHAASWLW-------VSDSPDIAHTAEVTNRPMVTPSARSRMLPVLGLSTRRNALLPAVLRYSSK 627
AA +Q +D MA+L +AGVVDTG AL+ + RER++KFLL +Q+ +G Y RD G TPLL ++ C PR+VR+++DAGAD T AVRV + TPL L E +V+ D T +Q NL A RLLL+VE VHA SWLW + A T +P+ +SR+ + S RR A LP V R + K
Sbjct: 222 AAVDQHLDVMALLCDAGVVDTGNALVATVFLGRERALKFLL-EQKGEGTARTTYASTPRDGRGHTPLLSAVTTGP---CSPRVVRLLVDAGADATLAVRVPDGFGRSTKYTPLDCATRCLAE-KVVDEDFATAQQLRNLRASRRLLLQVEVVHATSWLWGGHAGCPAAPGKKRAQTESTNGKPL-----KSRLPIMWRRSARRGAALPGVFRLAKK 427 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig9.17002.1 >prot_E-siliculosus-1a_M_contig9.17002.1 ID=prot_E-siliculosus-1a_M_contig9.17002.1|Name=mRNA_E-siliculosus-1a_M_contig9.17002.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=201bp MAVLANAGVVDTGIALIGAIKENRERSIKFLLRQQQLQGKPTGAYVDEARback to top mRNA from alignment at E-siliculosus-1a_M_contig9:915830..918262+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig9.17002.1 ID=mRNA_E-siliculosus-1a_M_contig9.17002.1|Name=mRNA_E-siliculosus-1a_M_contig9.17002.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2433bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:915830..918262+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:915830..918262+ >mRNA_E-siliculosus-1a_M_contig9.17002.1 ID=mRNA_E-siliculosus-1a_M_contig9.17002.1|Name=mRNA_E-siliculosus-1a_M_contig9.17002.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1206bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:915830..918262+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |