mRNA_E-siliculosus-1a_M_contig9.17001.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.17001.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.17001.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17001.1 vs. uniprot
Match: A0A6H5K562_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K562_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 8.350e-21
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 2 
Query:    5 VMGFGPLKEAFEEFCSKALCSESFHFLVDVAEYQDLLNVTSGDERINDDFKHYVGIVKEYIKIGSNSEINIACRTKTSIIELGERSAYASL 277
            +MGF PL+ AF EFC KALC ESF FLVDV++++   +V +  +  ND ++ ++ IV EYI+  SN E+NI  RTK  I+  G+RSAYASL
Sbjct:   22 IMGFLPLEHAFGEFCRKALCHESFQFLVDVSKFKS--SVHAAHQGGNDSYEEFIVIVDEYIEDNSNFEVNIDSRTKKEILGFGDRSAYASL 110
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17001.1 vs. uniprot
Match: D8LLA9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA9_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.250e-17
Identity = 51/122 (41.80%), Postives = 73/122 (59.84%), Query Frame = 2 
Query:   23 LKEAFEEFCSKALCSESFHFLVDVAEYQDLLNVTSGDERINDDFKHYVGIVKEYIKIGSNSEINIACRTKTSIIELGERSAYASLCLEDRITVFNLAEKEIITMLADNLLDKFKATPYYKEI 388
            L EAFEEFC KALCSES  FL     + D +  ++ +E  N  F  ++ I  +YIK GS  EINI  +TK+ I++  ++ A+  L L+D     + A KE+  ML +NL DKF+ T  +K+I
Sbjct:  307 LLEAFEEFCRKALCSESILFLKAAWAFNDSVYASTANEDTN--FALFMDIFDKYIKDGSPFEINIESKTKSFIMKRTDKEAFKQLRLDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQI 426
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17001.1 vs. uniprot
Match: D7G0P7_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P7_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 2.080e-16
Identity = 52/126 (41.27%), Postives = 73/126 (57.94%), Query Frame = 2 
Query:    5 VMGFGPLKEAFEEFCSKALCSESFHFLVDVAEYQDLLNVTSGDERINDDFKHYVGIVKEYIKIGSNSEINIACRTKTSIIELGERSAYASLCLEDRITVFNLAEKEIITMLADNLLDKFKATPYYK 382
            +M + PL+EAF EFC K+LCSE           +     T+  ER+         +V EY+K G+ SEINI+  TK +I+EL +  A+ASL  + R  +F  AE+EI +ML DNL+ KF A+  YK
Sbjct:   72 IMNYLPLREAFGEFCQKSLCSER----------RRGEGGTNTHERVGG----VAAMVNEYVKDGAPSEINISSNTKHNIMELTKIEAFASLDQDARKLIFVKAEREIRSMLEDNLMAKFLASAQYK 183
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17001.1 vs. uniprot
Match: A0A6H5JLH7_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH7_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 9.930e-13
Identity = 37/119 (31.09%), Postives = 72/119 (60.50%), Query Frame = 2 
Query:   17 GPLKEAFEEFCSKALCSESFHFLVDVAEYQDLLNVTSGDERINDDFKHYVGIVKEYIKIGSNSEINIACRTKTSIIELGERSAYASLCLEDRITVFNLAEKEIITMLADNLLDKFKATP 373
            G +   FE++C ++LC+ES+ F+V   +Y++   ++  +E+    +K ++ I +EY++  S  E+NI+ + +  ++ L +   ++SL  + R  V     KE++ ML +NLL+KFK TP
Sbjct:  201 GSVASMFEQYCMRSLCAESWDFIVAACKYEE---ISDPEEQ----YKMFLRITEEYLRPTSPQEVNISSKMQAKMVSLQDSVKFSSLDGDSRRNVLQEPLKEVVRMLEENLLNKFKQTP 312
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.17001.1 vs. uniprot
Match: A0A6H5KD71_9PHAE (RGS domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD71_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 6.500e-12
Identity = 37/119 (31.09%), Postives = 71/119 (59.66%), Query Frame = 2 
Query:   17 GPLKEAFEEFCSKALCSESFHFLVDVAEYQDLLNVTSGDERINDDFKHYVGIVKEYIKIGSNSEINIACRTKTSIIELGERSAYASLCLEDRITVFNLAEKEIITMLADNLLDKFKATP 373
            G +   F+ FC+++LC+ES+ F+V   +Y++   ++  +E+    ++ ++ I +EY++  S  E+NI  + +  ++ L +   ++SL  + R  V     KEI+ ML +NLL+KFK TP
Sbjct:  163 GSVASMFKHFCTRSLCAESWDFIVAACKYEE---ISDPEEQ----YEMFLRITEEYLQPTSPQEVNIGSKMQAKMVSLQDSVKFSSLDGDSRRNVLQEPLKEIVRMLEENLLNKFKQTP 274
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K562_9PHAE8.350e-2151.65RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LLA9_ECTSI1.250e-1741.80RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0P7_ECTSI2.080e-1641.27RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JLH7_9PHAE9.930e-1331.09RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KD71_9PHAE6.500e-1231.09RGS domain-containing protein n=3 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:903291..904764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size381
Model size388
Exons3
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
Ec32 orthologEc-15_003060.2
Ec32 ortholog descriptionhypothetical protein
EggNOG OGs2D0MX@1,2SERP@2759
EggNOG free text desc.Regulator of G protein signaling domain
Seed eggNOG ortholog2880.D8LTR6
Seed ortholog evalue7.9e-24
Seed ortholog score116.7
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.17001.1prot_E-siliculosus-1a_M_contig9.17001.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 903291..904757 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936390.119989-CDS-E-siliculosus-1a_M_contig9:903290..9033951622936390.119989-CDS-E-siliculosus-1a_M_contig9:903290..903395Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 903291..903395 -
1696251056.2146716-CDS-E-siliculosus-1a_M_contig9:903290..9033951696251056.2146716-CDS-E-siliculosus-1a_M_contig9:903290..903395Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 903291..903395 -
1622936390.1340847-CDS-E-siliculosus-1a_M_contig9:903617..9038301622936390.1340847-CDS-E-siliculosus-1a_M_contig9:903617..903830Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 903618..903830 -
1696251056.2275712-CDS-E-siliculosus-1a_M_contig9:903617..9038301696251056.2275712-CDS-E-siliculosus-1a_M_contig9:903617..903830Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 903618..903830 -
1622936390.1522148-CDS-E-siliculosus-1a_M_contig9:904694..9047571622936390.1522148-CDS-E-siliculosus-1a_M_contig9:904694..904757Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 904695..904757 -
1696251056.235606-CDS-E-siliculosus-1a_M_contig9:904694..9047571696251056.235606-CDS-E-siliculosus-1a_M_contig9:904694..904757Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 904695..904757 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936390.1717134-UTR-E-siliculosus-1a_M_contig9:904757..9047641622936390.1717134-UTR-E-siliculosus-1a_M_contig9:904757..904764Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 904758..904764 -
1696251056.243548-UTR-E-siliculosus-1a_M_contig9:904757..9047641696251056.243548-UTR-E-siliculosus-1a_M_contig9:904757..904764Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 904758..904764 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.17001.1

>prot_E-siliculosus-1a_M_contig9.17001.1 ID=prot_E-siliculosus-1a_M_contig9.17001.1|Name=mRNA_E-siliculosus-1a_M_contig9.17001.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=127bp
MGFGPLKEAFEEFCSKALCSESFHFLVDVAEYQDLLNVTSGDERINDDFK
HYVGIVKEYIKIGSNSEINIACRTKTSIIELGERSAYASLCLEDRITVFN
LAEKEIITMLADNLLDKFKATPYYKEI
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mRNA from alignment at E-siliculosus-1a_M_contig9:903291..904764-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.17001.1 ID=mRNA_E-siliculosus-1a_M_contig9.17001.1|Name=mRNA_E-siliculosus-1a_M_contig9.17001.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1474bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:903291..904764- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TTTTGTCATGGGTTTTGGCCCACTGAAGGAGGCCTTCGAGGAGTTTTGCT
CGAAGGCGCTTTGCAGTGAGGTACGCGAAGACATCCAATCTCGACTGATG
TTTGTAGTGCCGTCGTCGACTATGGCGCTGAGCGCGACCCGAGACATTGT
GACAGACTGCCGTAAGCGACACATGTTCGATGGAACGGTTCCTGTGTTTC
TCTCCTCTTTGAGACATTGGCCGGATATGATGAAGCCCTTGAGCTGTGGT
GAGTATACCTTTCCCGGGAACCGGGTATTGAGTCACTTCCACCATCCTGC
TGCCGGAGGATGTGGCATACTGGTTTGTAGGAATAACCATGGCGAAACGT
AAACATGGCTAGCATTCCTCCTGGACAGCTACTGTGAACACTCTCTGCTT
GTGTGTTTACGCTTGTCGCGTGTCCGGGGTTCATTCGGGTACGACCGTAG
GCGGATTTTTTTTTTTGTATACACTTCAAATCAGCCCTCACAGCACTACA
GTAGTGCCGTTTACTCCAACCCGTGGTCACAAAGAAAAGCCCCTCTCTAC
CCTACCCTCCTGCGGTACATTGCCTTCGATTTTTAATGCGAGAAGAGTTC
AGCACTCTCTTCCCTCTGTGTACACACGAACTAGCGCTATCCACTAGGCC
AGGAGCGGAAGCGCAAGAAAAACTCACTTCGCAAGGAAAAGCTCGCTTAC
GCCGGGATTCGAACCCCTGATCTGACCTCTAGAAGGTTTCGAGGATACCA
ACTAGACCACCGGGGCGACCGGTTAGCGGATAACCTTCGAGAAATGTCCC
GCTCTTGAAACACTTCCGAGAATCAACCACGTTATGCGCCAAACGCCCAA
ATTTATCACTGATATGCATCCAATTCGATGGGGTTCACGTTTTCCCTCTT
CACCTCAACCTTGTCTTGTTGTAATGATATGCAGTCGTTTCATTTCTTGG
TCGACGTGGCCGAGTATCAAGACTTGCTCAACGTCACCAGTGGTGACGAG
CGCATCAACGATGACTTCAAACACTATGTCGGCATTGTCAAAGAGTACAT
CAAGATCGGTTCCAACTCCGAAATTAACATCGCCTGCCGGACCAAAACGA
GCATTATCGAACTCGGCGAACGGTCCGCGTACGCCTCCCTTTGCCTGGTG
AGTGGAAATCAACGAACGGTTTCCGATTCGTCGATGCTGCAACGAAGCCT
AGCGTATGGTGTTTACTACTTTCTTTGTCGCCGTTCTACCGGCCTCGCTT
GGATTGGCTTCTTTGTCTAGGTGGTTTGGTGTCCGACAGCTCTCACGAAT
GAATGTTCCTTCGTGGAATCCAAAGGGTAAATGCTCGCTGGTAATGTGCC
CCTTTGTGTTTTGCCGCAGGAGGACCGCATCACAGTGTTCAATCTGGCCG
AGAAGGAAATTATCACCATGTTGGCGGACAACCTGCTGGACAAATTCAAA
GCCACGCCATACTATAAAGAGATA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:903291..904764-

>mRNA_E-siliculosus-1a_M_contig9.17001.1 ID=mRNA_E-siliculosus-1a_M_contig9.17001.1|Name=mRNA_E-siliculosus-1a_M_contig9.17001.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=762bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:903291..904764- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGTTTTGGCCCACTGAAGGAGGCCTTCGAGGAGTTTTGCTCGAAGGC
GCTTTGCAGTGAGATGGGTTTTGGCCCACTGAAGGAGGCCTTCGAGGAGT
TTTGCTCGAAGGCGCTTTGCAGTGAGTCGTTTCATTTCTTGGTCGACGTG
GCCGAGTATCAAGACTTGCTCAACGTCACCAGTGGTGACGAGCGCATCAA
CGATGACTTCAAACACTATGTCGGCATTGTCAAAGAGTACATCAAGATCG
GTTCCAACTCCGAAATTAACATCGCCTGCCGGACCAAAACGAGCATTATC
GAACTCGGCGAACGGTCCGCGTACGCCTCCCTTTGCCTGTCGTTTCATTT
CTTGGTCGACGTGGCCGAGTATCAAGACTTGCTCAACGTCACCAGTGGTG
ACGAGCGCATCAACGATGACTTCAAACACTATGTCGGCATTGTCAAAGAG
TACATCAAGATCGGTTCCAACTCCGAAATTAACATCGCCTGCCGGACCAA
AACGAGCATTATCGAACTCGGCGAACGGTCCGCGTACGCCTCCCTTTGCC
TGGAGGACCGCATCACAGTGTTCAATCTGGCCGAGAAGGAAATTATCACC
ATGTTGGCGGACAACCTGCTGGACAAATTCAAAGCCACGCCATACTATAA
AGAGATAGAGGACCGCATCACAGTGTTCAATCTGGCCGAGAAGGAAATTA
TCACCATGTTGGCGGACAACCTGCTGGACAAATTCAAAGCCACGCCATAC
TATAAAGAGATA
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