mRNA_E-siliculosus-1a_M_contig9.16987.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.16987.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.16987.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16987.1 vs. uniprot
Match: D7G1K0_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K0_ECTSI)

HSP 1 Score: 47.4 bits (111), Expect = 5.830e-5
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = -2 
Query:   57 HWHTLRPAVVAIVAKIVVVDGL 122
            HWHTLRPAVVA+VAKIVVVDGL
Sbjct:  647 HWHTLRPAVVAVVAKIVVVDGL 668
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.16987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1K0_ECTSI5.830e-595.45USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:731678..732177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size123
Model size123
Exons2
Ec32 orthologEc-07_001380.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936386.247625-CDS-E-siliculosus-1a_M_contig9:731677..7317411622936386.247625-CDS-E-siliculosus-1a_M_contig9:731677..731741Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 731678..731741 -
1696251054.4490163-CDS-E-siliculosus-1a_M_contig9:731677..7317411696251054.4490163-CDS-E-siliculosus-1a_M_contig9:731677..731741Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 731678..731741 -
1622936386.2671916-CDS-E-siliculosus-1a_M_contig9:732118..7321771622936386.2671916-CDS-E-siliculosus-1a_M_contig9:732118..732177Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 732119..732177 -
1696251054.4590454-CDS-E-siliculosus-1a_M_contig9:732118..7321771696251054.4590454-CDS-E-siliculosus-1a_M_contig9:732118..732177Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 732119..732177 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.16987.1prot_E-siliculosus-1a_M_contig9.16987.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 731678..732177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.16987.1

>prot_E-siliculosus-1a_M_contig9.16987.1 ID=prot_E-siliculosus-1a_M_contig9.16987.1|Name=mRNA_E-siliculosus-1a_M_contig9.16987.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=41bp
IPLQPQQPPRSSTRLIPAERPSTTTIFATIATTAGRRVCQ*
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mRNA from alignment at E-siliculosus-1a_M_contig9:731678..732177-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.16987.1 ID=mRNA_E-siliculosus-1a_M_contig9.16987.1|Name=mRNA_E-siliculosus-1a_M_contig9.16987.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=500bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:731678..732177- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATACCGCTGCAGCCGCAGCAACCCCCAAGGTCTTCCACGAGACTGATACC
AGCTGAAAGGTGAGTGGCAGACGACCCCGAAACACGGCGACCCCGCGTGA
CGCCCACACCACTGATGCGCTCCATCCACCCGTCTCAGCGATACGGTCAA
CGACAATCGCAACCAACCCTGCAGTGAACATGGCCATCGCCGCGCGGAAG
GGGTGCCAACGCGGTGACTCCGCCCCGCGCCCTGGCGACCTCTGGTGGAA
AACGGTCGGGTATACCCATGTACCCACGGCAACCATTCCGTTCGTGATGC
TGCTCATGACGTCAAGAGTACACGAGCGCATGTAGGCCCCGGAACCGAGC
ACGACCGACCAGCACAAGACCTCCCTCCAGCCAGACACAAAGTTCGCCGC
AACTTGCTCTGACACCCACCACACCAGGCCCCCCAGGCCATCGACTACAA
CGATCTTCGCCACAATTGCCACCACCGCTGGGCGGAGGGTGTGCCAGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:731678..732177-

>mRNA_E-siliculosus-1a_M_contig9.16987.1 ID=mRNA_E-siliculosus-1a_M_contig9.16987.1|Name=mRNA_E-siliculosus-1a_M_contig9.16987.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=246bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:731678..732177- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATACCGCTGCAGCCGCAGCAACCCCCAAGGTCTTCCACGAGACTGATACC
AGCTGAAAGATACCGCTGCAGCCGCAGCAACCCCCAAGGTCTTCCACGAG
ACTGATACCAGCTGAAAGGCCATCGACTACAACGATCTTCGCCACAATTG
CCACCACCGCTGGGCGGAGGGTGTGCCAGTGAGCCATCGACTACAACGAT
CTTCGCCACAATTGCCACCACCGCTGGGCGGAGGGTGTGCCAGTGA
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