mRNA_E-siliculosus-1a_M_contig9.16981.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.16981.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.16981.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16981.1 vs. uniprot
Match: D7G1K8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1K8_ECTSI)

HSP 1 Score: 514 bits (1325), Expect = 4.120e-183
Identity = 277/314 (88.22%), Postives = 281/314 (89.49%), Query Frame = 1 
Query:    1 MRSDIATVIAFGLLSVCPVSAAPTYSCFDPPDEGQTNPLGEGMEDVVESECCEALIDESDMLADRKVIWDPVNCNHGPGDEPIAEAYLCRAHDTDGCRFCHDSCDGFEGLCITCEEVAEELLNSDSPTPSPDFETSEFPATPAPAILTAATEAPFGIFPATPAPVAPVXXPTXXXXXXXXXXXXXXXXXXXXX--------------------------------APAPTAEASDCECVNSLSEEEMAVLTRRSKNMVCDPTCSDQSDLVWGVMNCNYFALGQNCRACSDLCDDQGDGTWLDQDGFPCKPCSAI 846
            MRSDIATVIAFGLLSVCPVSAAPTYSCFDPPDEGQTNPLGEGMEDVVESECCEALIDESDM+ADR+VIWDPVNCNHGPGDEPIAEAYLCRAHDTDGCRFCHDSCDG+EGLCITCEEV E+LLNSDSPTPSPDFETSEFPATPAPAILTAATEAPFGIFPATPAPVAPVXXPTXXXXXXXXXXXXXXXXXXXXX                                APAPTAEASDCECVNSLSEEEMAVLTRRSKNMVCDPTCSDQSDLVWGVMNCNYFALGQNCRACSDLCDDQGDGTWLDQDGFPCKPCSAI
Sbjct:    1 MRSDIATVIAFGLLSVCPVSAAPTYSCFDPPDEGQTNPLGEGMEDVVESECCEALIDESDMMADREVIWDPVNCNHGPGDEPIAEAYLCRAHDTDGCRFCHDSCDGYEGLCITCEEVLEDLLNSDSPTPSPDFETSEFPATPAPAILTAATEAPFGIFPATPAPVAPVXXPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAPTAEASDCECVNSLSEEEMAVLTRRSKNMVCDPTCSDQSDLVWGVMNCNYFALGQNCRACSDLCDDQGDGTWLDQDGFPCKPCSAI 314
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.16981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1K8_ECTSI4.120e-18388.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:658190..661596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size849
Model size849
Exons4
Ec32 orthologEc-07_001410.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.16981.1prot_E-siliculosus-1a_M_contig9.16981.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 658190..661596 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936384.8294666-CDS-E-siliculosus-1a_M_contig9:658189..6583201622936384.8294666-CDS-E-siliculosus-1a_M_contig9:658189..658320Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 658190..658320 -
1696251053.8493462-CDS-E-siliculosus-1a_M_contig9:658189..6583201696251053.8493462-CDS-E-siliculosus-1a_M_contig9:658189..658320Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 658190..658320 -
1622936384.8467228-CDS-E-siliculosus-1a_M_contig9:658829..6592231622936384.8467228-CDS-E-siliculosus-1a_M_contig9:658829..659223Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 658830..659223 -
1696251053.8630524-CDS-E-siliculosus-1a_M_contig9:658829..6592231696251053.8630524-CDS-E-siliculosus-1a_M_contig9:658829..659223Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 658830..659223 -
1622936384.8708172-CDS-E-siliculosus-1a_M_contig9:659584..6597321622936384.8708172-CDS-E-siliculosus-1a_M_contig9:659584..659732Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 659585..659732 -
1696251053.8728163-CDS-E-siliculosus-1a_M_contig9:659584..6597321696251053.8728163-CDS-E-siliculosus-1a_M_contig9:659584..659732Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 659585..659732 -
1622936384.8853762-CDS-E-siliculosus-1a_M_contig9:661420..6615961622936384.8853762-CDS-E-siliculosus-1a_M_contig9:661420..661596Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 661421..661596 -
1696251053.8830006-CDS-E-siliculosus-1a_M_contig9:661420..6615961696251053.8830006-CDS-E-siliculosus-1a_M_contig9:661420..661596Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 661421..661596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.16981.1

>prot_E-siliculosus-1a_M_contig9.16981.1 ID=prot_E-siliculosus-1a_M_contig9.16981.1|Name=mRNA_E-siliculosus-1a_M_contig9.16981.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=283bp
MRSDIATVIAFGLLSVCPVSAAPTYSCFDPPDEGQTNPLGEGMEDVVESE
CCEALIDESDMLADRKVIWDPVNCNHGPGDEPIAEAYLCRAHDTDGCRFC
HDSCDGFEGLCITCEEVAEELLNSDSPTPSPDFETSEFPATPAPAILTAA
TEAPFGIFPATPAPVAPVAPPTEAPAAPSTEAPVAPATDAPVAAPAPTAE
ASDCECVNSLSEEEMAVLTRRSKNMVCDPTCSDQSDLVWGVMNCNYFALG
QNCRACSDLCDDQGDGTWLDQDGFPCKPCSAI*
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mRNA from alignment at E-siliculosus-1a_M_contig9:658190..661596-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.16981.1 ID=mRNA_E-siliculosus-1a_M_contig9.16981.1|Name=mRNA_E-siliculosus-1a_M_contig9.16981.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3407bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:658190..661596- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCGTTCCGACATCGCCACGGTCATCGCCTTCGGGCTCCTCAGCGTCTG
CCCCGTCAGCGCCGCGCCGACGTACTCGTGCTTCGACCCCCCGGACGAGG
GACAGACCAACCCTCTCGGGGAGGGCATGGAGGACGTCGTCGAGTCCGAG
TGCTGCGAGGCACTCATCGACGAGAGGTGAGCTAGATTGAGTAAGGAGTG
AGGCGAGACGCGGTCTGCGGTAGATACAGTGACAGTCAGAAGCGCGTCTG
TTTTGTTGCTTAAGTTGCTTTGTTCGCCGACGGGGCGGATCGTATCCACA
GATATGTAGATACGATCCTTCATCCATCGACAGAGCATGCGCCACATGTT
CCCGAGCCGACGCGTTGTAAGATACGCACACGCATCCCAGTGTTCCTTGC
TGCCTCCCTGTGTTCCTTGCTGTCTCCCAGTGCCGCTTGCAGCGGCGGCT
CGTGCTGAAAGCGCTGCCCTGTTATGGGTCACTGTTGCCTTTGTCACGGG
CTCGAGCTCGGCGAACGCAACAACACCCGTCGTGCGTGTGGTACCCAACA
TTATGCATAGTACAGGGCAGTGTATCCGACCAAATTGTTGTCAAGATTAC
GTTACATCATCTTGACATTCTCGAAGCATCTACTCAGTCAACGAGACAAA
ACAGACATACACGCGTACACCCGCAGCAGCACAGCGCATATAATGTCGTC
TCTCGCCGTAGACTATGGGCTTGACTTGCTGCGAACGGCACGCGACGAAA
TCGCGTGCAAAGAAGTGCGTAAAATATGAACGCGAATGATGGCTCCTTTA
AACACGCAAGACAATAATGTACAACGAACCCAGTTCTGACGGATGTCATC
TGGAATTATGCAAGCCACGTGACTTTCGAGAAGGGACGCCCCCAGCGAGC
CACACTACGTTACAAATAGCGAAAGTGCAGACCATCATGTAGTAGGTTGC
GCCCACGCCGAGAGCGATTGTGAAGGAGTAGCCCAAGCTTCCGCTTACAG
CTTTGCCGGAGGACCAAAGTCGAAACGTCCACCCCCTTGCGTACTCTTTG
TAGGTGCCCGCTTTTCTACTTTACTGGGTAGTTTCGCGATCCTCATCTAG
ATCACCCAAAGAGTGCGCGTACTATACAGTGGTACACGTACTTGCCCTAC
AAACTTGCGAACCACGAACGCCGCTCCTTTTGTGCGAGATACTGCCGCCG
CGCCCGTTCCGTAATCCCACCACCACACCTTTTTTCTTTGGGGCACTGAT
ACTTGTGTCGGTCGTTGTTGTTGTTGCGGTGGAAAAAATCGACGTTGTTG
TTGTCGTGTGACGCCCCTCTTTGCCCTTCCCTGTTCCCGGTCGTGCTTCA
TCGAAGAGATCAATAGGCCTTGACTACGGTAGACCACTGTTGTTACAATG
CACACCACCCCGCGCGTGCGCTCCTCGCCTTTGGCATGACGCATCGATAT
TGCGCCCGCAAAACTGCTGAAAATATAGTATCACCCAAAACAGAAACAAT
AATACACCAAACCTTTGCATACCATTCCCTTCACACTTTTTTTCAAACAA
TGTGGTTGCGCCGCCATTATTGGCCGCCTGGTCTCGGGCGTCGACCTCGA
GATCCAAAACCGGCCAGAGGCCGAGAGGGCAGAGGTTGAAACAATATGAG
AGGCAGTCGGGGTGTTCTGCAATAGTCCTCCACCGCCAAGAGTGCTATCC
GGGAAGGGTACACCGCTCTTCCGCCATGTTCTAAGTAAGAAAACTGCTTT
CCACACGGACGCCTCCAACACAATGTTTTCCCCGCCCCCCTGTCATCATA
CGGATCCCTCTAACAATGCTTTCCCCGACCTCCCCGTCGTGCCATCGCCG
CCTGCGAACCTCAGCGACATGTTGGCCGACCGCAAGGTCATCTGGGACCC
CGTAAACTGCAACCACGGGCCCGGCGACGAGCCCATCGCGGAAGCGTACC
TCTGCCGGGCGCACGACACCGACGGCTGCCGCTTCTGCCACGACTCGTGC
GACGGGTTTGAGGTGCGTCGTTCACGCCACAACTTTTGGCTATATTTCTC
CAACTATTCCTGCTCTGCGGCGTAAGCGTTGTTCGCCAAGCGTTGTTCGT
GTCGAAATGCTCGTGCTACGTCTGCTGTTGTCTTCTTCTCGATCGAGCCG
TGTGTCGTGGTCGGCTCTTTGCCTGGCTGACTTTTTTCCGGTTGCCCAAA
CTTGTTTGTCCTCTGCAGTTGTCCCGTTTGCGGTAAACTGCCTATCTATG
ACATATGCTCGAACATGTCCTCGCGCGCGTGGGTCTTACGATGCGGCCAT
GTTACTCTTGCCGTACCCTCTCCGAAAGCTCGAACCAATCCCACCTCTCC
TCCCTTCCCTCTCCCCACACCAGGGCCTCTGCATCACCTGCGAAGAGGTC
GCGGAGGAACTGCTGAACTCGGACAGCCCCACGCCTTCCCCGGACTTCGA
GACCTCCGAGTTCCCGGCAACCCCGGCGCCGGCGATCCTCACCGCCGCCA
CCGAGGCCCCCTTCGGTATCTTCCCCGCGACCCCCGCGCCGGTTGCCCCC
GTGGCGCCGCCTACCGAAGCGCCCGCGGCGCCGTCTACCGAAGCACCTGT
GGCGCCGGCCACCGACGCGCCCGTTGCCGCACCCGCCCCCACCGCCGAGG
CCTCGGACTGCGAGTGCGTCAACAGCCTGTCGGAGGAGGAGATGGCCGTG
CTCACGCGACGGTCGAAGAACATGGTGTGCGACCCGACCTGCTCGGACCA
GTCCGACCTCGTCTGGGGTGAGTTACGGTAGCCATTTTTTTTCTTACATT
GTTTGCCAATTTATATTGTTGTTTAGTTTTCGGGTTCGGGTTCAGAGCCA
TTATTGCTTTATATTTTTCTGCTAGGAACTACAGACTCCAAAGGCTGAAA
AAAAAGAACAATAGAAAGAACGGCCCACTAAAACAACTTCGAATAATATG
TAGTCTTTGGTGGTTTCCTGGGGTTTTTGATACTTTGCGCCTCAAAAGCG
GGAACTAAAAAAAGGAAGTCCACGAAGCAGTACTTCAGGGCCAACCTGAA
CAGCTTCTCCTGTGCATAAAAAAAAAGGCATGCGTACGAAGGGTGTTTTG
TCTGCGTGGCCCCCGGCACGAAGACCCCGTGTGTGGGCGGTTCGGTTGTC
GTTGCGAGCGGTACCGTAGGCTATAAATTTCTGTGCCCTCTCCCCTCCGG
CGATACGCCCGTGACCACCGCCAAACCACTCACCCCAACAAGCGCCCGCC
CCCCCTATGCCCTACCCAACTCTCAGGCGTGATGAACTGCAACTACTTCG
CCCTGGGCCAGAACTGCCGCGCGTGCAGCGACCTCTGCGACGACCAGGGG
GACGGAACCTGGCTGGACCAGGACGGCTTCCCGTGCAAGCCGTGCTCCGC
CATCTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:658190..661596-

>mRNA_E-siliculosus-1a_M_contig9.16981.1 ID=mRNA_E-siliculosus-1a_M_contig9.16981.1|Name=mRNA_E-siliculosus-1a_M_contig9.16981.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1698bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:658190..661596- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCGTTCCGACATCGCCACGGTCATCGCCTTCGGGCTCCTCAGCGTCTG
CCCCGTCAGCGCCGCGCCGACGTACTCGTGCTTCGACCCCCCGGACGAGG
GACAGACCAACCCTCTCGGGGAGGGCATGGAGGACGTCGTCGAGTCCGAG
TGCTGCGAGGCACTCATCGACGAGAGATGCGTTCCGACATCGCCACGGTC
ATCGCCTTCGGGCTCCTCAGCGTCTGCCCCGTCAGCGCCGCGCCGACGTA
CTCGTGCTTCGACCCCCCGGACGAGGGACAGACCAACCCTCTCGGGGAGG
GCATGGAGGACGTCGTCGAGTCCGAGTGCTGCGAGGCACTCATCGACGAG
AGCGACATGTTGGCCGACCGCAAGGTCATCTGGGACCCCGTAAACTGCAA
CCACGGGCCCGGCGACGAGCCCATCGCGGAAGCGTACCTCTGCCGGGCGC
ACGACACCGACGGCTGCCGCTTCTGCCACGACTCGTGCGACGGGTTTGAG
CGACATGTTGGCCGACCGCAAGGTCATCTGGGACCCCGTAAACTGCAACC
ACGGGCCCGGCGACGAGCCCATCGCGGAAGCGTACCTCTGCCGGGCGCAC
GACACCGACGGCTGCCGCTTCTGCCACGACTCGTGCGACGGGTTTGAGGG
CCTCTGCATCACCTGCGAAGAGGTCGCGGAGGAACTGCTGAACTCGGACA
GCCCCACGCCTTCCCCGGACTTCGAGACCTCCGAGTTCCCGGCAACCCCG
GCGCCGGCGATCCTCACCGCCGCCACCGAGGCCCCCTTCGGTATCTTCCC
CGCGACCCCCGCGCCGGTTGCCCCCGTGGCGCCGCCTACCGAAGCGCCCG
CGGCGCCGTCTACCGAAGCACCTGTGGCGCCGGCCACCGACGCGCCCGTT
GCCGCACCCGCCCCCACCGCCGAGGCCTCGGACTGCGAGTGCGTCAACAG
CCTGTCGGAGGAGGAGATGGCCGTGCTCACGCGACGGTCGAAGAACATGG
TGTGCGACCCGACCTGCTCGGACCAGTCCGACCTCGTCTGGGGGCCTCTG
CATCACCTGCGAAGAGGTCGCGGAGGAACTGCTGAACTCGGACAGCCCCA
CGCCTTCCCCGGACTTCGAGACCTCCGAGTTCCCGGCAACCCCGGCGCCG
GCGATCCTCACCGCCGCCACCGAGGCCCCCTTCGGTATCTTCCCCGCGAC
CCCCGCGCCGGTTGCCCCCGTGGCGCCGCCTACCGAAGCGCCCGCGGCGC
CGTCTACCGAAGCACCTGTGGCGCCGGCCACCGACGCGCCCGTTGCCGCA
CCCGCCCCCACCGCCGAGGCCTCGGACTGCGAGTGCGTCAACAGCCTGTC
GGAGGAGGAGATGGCCGTGCTCACGCGACGGTCGAAGAACATGGTGTGCG
ACCCGACCTGCTCGGACCAGTCCGACCTCGTCTGGGGCGTGATGAACTGC
AACTACTTCGCCCTGGGCCAGAACTGCCGCGCGTGCAGCGACCTCTGCGA
CGACCAGGGGGACGGAACCTGGCTGGACCAGGACGGCTTCCCGTGCAAGC
CGTGCTCCGCCATCTAAGCGTGATGAACTGCAACTACTTCGCCCTGGGCC
AGAACTGCCGCGCGTGCAGCGACCTCTGCGACGACCAGGGGGACGGAACC
TGGCTGGACCAGGACGGCTTCCCGTGCAAGCCGTGCTCCGCCATCTAA
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