mRNA_E-siliculosus-1a_M_contig9.16965.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.16965.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.16965.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.16965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:474127..474782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size174
Model size175
Exons2
Ec32 orthologEc-07_001610.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categorysignal peptide
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936381.0484161-CDS-E-siliculosus-1a_M_contig9:474126..4741791622936381.0484161-CDS-E-siliculosus-1a_M_contig9:474126..474179Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 474127..474179 -
1696251052.0741704-CDS-E-siliculosus-1a_M_contig9:474126..4741791696251052.0741704-CDS-E-siliculosus-1a_M_contig9:474126..474179Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 474127..474179 -
1622936381.0657606-CDS-E-siliculosus-1a_M_contig9:474661..4747821622936381.0657606-CDS-E-siliculosus-1a_M_contig9:474661..474782Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 474662..474782 -
1696251052.0828273-CDS-E-siliculosus-1a_M_contig9:474661..4747821696251052.0828273-CDS-E-siliculosus-1a_M_contig9:474661..474782Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 474662..474782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.16965.1prot_E-siliculosus-1a_M_contig9.16965.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 474127..474782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.16965.1

>prot_E-siliculosus-1a_M_contig9.16965.1 ID=prot_E-siliculosus-1a_M_contig9.16965.1|Name=mRNA_E-siliculosus-1a_M_contig9.16965.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=58bp
CWFWFLLPSLSRRLSARAVRQGAAETSRIDRGISRDGKQTDTNNTCIQEL
STCAWKK*
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mRNA from alignment at E-siliculosus-1a_M_contig9:474127..474782-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.16965.1 ID=mRNA_E-siliculosus-1a_M_contig9.16965.1|Name=mRNA_E-siliculosus-1a_M_contig9.16965.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=656bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:474127..474782- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TGTTGGTTTTGGTTCCTCCTTCCGTCATTGTCCCGCCGCTTGTCCGCCCG
CGCTGTCCGCCAAGGAGCAGCGGAGACATCTAGGATAGATAGAGGAATAT
CGAGAGACGGCAAGCAAACAGGTGAGGCTTGCCCGTGTGTAGAATCGTAT
TGAGCTGCTGTACCATTTGCCGAAGGTTGCCCTGGGTAGGAGGTACCGTA
CAATATGTTGCATAAGATACCACTCCCCCCCGAACCGAGTCAAGGCTCTC
GATATCCCACTCACTGATGAAGCAGAGAGATGCCACAACTTGTCAAATGA
CACGCCTTCGGAAAGCTCTCAACGAGACGGTTCCGTTGCTGCCGTTTCGG
CATTCGGTACCGTAACTGCTGTCTCCGCTGTAGAGTACTCGAGGTCTGCA
AATCGGTCCTGAGGTGTGGGTGGTATCTCAACCTGAACCTTGTGGTCGTA
GCGTGATCCGTGATTCATTCGTGATCCATTCGTGACGTGACCTTTGAAAT
ACGATATTTAATATTTACGCTATAATACATAGTTTGCCGCAAAGGGTTGC
GGCTTCTTTGAGTACAACCGATTTTTAGATCCTCTTTCGTTTGCACCGTG
AAGACACCAACAACACATGCATACAAGAGCTCTCGACTTGTGCATGGAAA
AAGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:474127..474782-

>mRNA_E-siliculosus-1a_M_contig9.16965.1 ID=mRNA_E-siliculosus-1a_M_contig9.16965.1|Name=mRNA_E-siliculosus-1a_M_contig9.16965.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=348bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:474127..474782- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TGTTGGTTTTGGTTCCTCCTTCCGTCATTGTCCCGCCGCTTGTCCGCCCG
CGCTGTCCGCCAAGGAGCAGCGGAGACATCTAGGATAGATAGAGGAATAT
CGAGAGACGGCAAGCAAACAGTGTTGGTTTTGGTTCCTCCTTCCGTCATT
GTCCCGCCGCTTGTCCGCCCGCGCTGTCCGCCAAGGAGCAGCGGAGACAT
CTAGGATAGATAGAGGAATATCGAGAGACGGCAAGCAAACAGACACCAAC
AACACATGCATACAAGAGCTCTCGACTTGTGCATGGAAAAAGTGAACACC
AACAACACATGCATACAAGAGCTCTCGACTTGTGCATGGAAAAAGTGA
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