mRNA_E-siliculosus-1a_M_contig9.16939.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.16939.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.16939.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16939.1 vs. uniprot
Match: D8LQX3_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQX3_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.350e-10
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -1 
Query:  420 IRFLLLQNRQGKTRLSKWWIPLHDEKEKV 506
            IRFLLLQNRQGKTRLSKWWIPLHDEKEKV
Sbjct:    2 IRFLLLQNRQGKTRLSKWWIPLHDEKEKV 30
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16939.1 vs. uniprot
Match: A0A835YZE0_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE0_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.020e-7
Identity = 25/28 (89.29%), Postives = 28/28 (100.00%), Query Frame = -1 
Query:  423 IRFLLLQNRQGKTRLSKWWIPLHDEKEK 506
            IRFLLLQNRQGKTRLSKW+IPL+DE+EK
Sbjct:    2 IRFLLLQNRQGKTRLSKWYIPLYDEQEK 29
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16939.1 vs. uniprot
Match: A0A5B0N3E3_PUCGR (AP complex subunit sigma n=9 Tax=Pucciniales TaxID=5258 RepID=A0A5B0N3E3_PUCGR)

HSP 1 Score: 51.2 bits (121), Expect = 4.320e-5
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = -1 
Query:  414 IRFLLLQNRQGKTRLSKWWIPLHDE-KEKVGG 506
            IRF+L+QNRQGKTRLSKW++PL DE K KV G
Sbjct:    2 IRFILVQNRQGKTRLSKWYVPLEDEEKVKVRG 33
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16939.1 vs. uniprot
Match: A0A7S3XXE6_HETAK (AP complex subunit sigma n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXE6_HETAK)

HSP 1 Score: 50.4 bits (119), Expect = 8.320e-5
Identity = 22/28 (78.57%), Postives = 26/28 (92.86%), Query Frame = -1 
Query:  423 IRFLLLQNRQGKTRLSKWWIPLHDEKEK 506
            IRFLLLQNRQGKTRLSKW+IP  +++EK
Sbjct:    2 IRFLLLQNRQGKTRLSKWYIPSPEDEEK 29
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16939.1 vs. uniprot
Match: E3KE12_PUCGT (AP-2 complex subunit sigma n=3 Tax=Puccinia graminis f. sp. tritici TaxID=56615 RepID=E3KE12_PUCGT)

HSP 1 Score: 51.2 bits (121), Expect = 9.180e-5
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = -1 
Query:  414 IRFLLLQNRQGKTRLSKWWIPLHDE-KEKVGG 506
            IRF+L+QNRQGKTRLSKW++PL DE K KV G
Sbjct:   58 IRFILVQNRQGKTRLSKWYVPLEDEEKVKVRG 89
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.16939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LQX3_ECTSI1.350e-10100.00AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YZE0_9STRA3.020e-789.29AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
A0A5B0N3E3_PUCGR4.320e-575.00AP complex subunit sigma n=9 Tax=Pucciniales TaxID... [more]
A0A7S3XXE6_HETAK8.320e-578.57AP complex subunit sigma n=1 Tax=Heterosigma akash... [more]
E3KE12_PUCGT9.180e-575.00AP-2 complex subunit sigma n=3 Tax=Puccinia gramin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:204038..204549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size321
Model size512
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936371.9041264-UTR-E-siliculosus-1a_M_contig9:204037..2042281622936371.9041264-UTR-E-siliculosus-1a_M_contig9:204037..204228Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 204038..204228 +
1696251047.7784235-UTR-E-siliculosus-1a_M_contig9:204037..2042281696251047.7784235-UTR-E-siliculosus-1a_M_contig9:204037..204228Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 204038..204228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936371.9167786-CDS-E-siliculosus-1a_M_contig9:204228..2045491622936371.9167786-CDS-E-siliculosus-1a_M_contig9:204228..204549Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 204229..204549 +
1696251047.792237-CDS-E-siliculosus-1a_M_contig9:204228..2045491696251047.792237-CDS-E-siliculosus-1a_M_contig9:204228..204549Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 204229..204549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.16939.1prot_E-siliculosus-1a_M_contig9.16939.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 204229..204549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.16939.1

>prot_E-siliculosus-1a_M_contig9.16939.1 ID=prot_E-siliculosus-1a_M_contig9.16939.1|Name=mRNA_E-siliculosus-1a_M_contig9.16939.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=107bp
MYTQATRKGSNLRLEASSRTRHCQQPCPQGMHLPFRAPNPALDSTPKMCI
IRRLASCCCIHKHQSVDRILLDRPSSHLLLLIVQGNPPLREAGFTLAVLK
QEETDL*
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mRNA from alignment at E-siliculosus-1a_M_contig9:204038..204549+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.16939.1 ID=mRNA_E-siliculosus-1a_M_contig9.16939.1|Name=mRNA_E-siliculosus-1a_M_contig9.16939.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=512bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:204038..204549+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CGCCATGGGACATGGGGGGGGGGGAGGGGGGATTGTGAAGCTCTGGCGAT
GGTGTGCCATAAGGCCATTCTTTCGACCAGCCTCTGAACGGAAATTACGG
CATCCCCGACTTCGTAGTCGAAATTTGTCTATATGGCAAGACAGGAGGTC
AAAGGAGGCCCCGGGGGGGGTCGGCATATTTTGCCGCTGCGATGTACACA
CAGGCCACCCGAAAGGGGTCAAACCTTCGGCTCGAAGCATCCTCTCGAAC
CAGACATTGTCAACAACCCTGTCCGCAGGGGATGCATCTACCATTCCGTG
CGCCTAATCCGGCTTTGGACAGCACCCCAAAGATGTGCATCATACGAAGA
CTGGCGTCGTGTTGCTGTATCCACAAACATCAAAGTGTAGACCGAATTCT
GCTGGATCGTCCGTCCTCCCACCTTCTCCTTCTCATCGTGCAAGGGAATC
CACCACTTCGAGAGGCGGGTTTTACCCTGGCGGTTTTGAAGCAGGAGGAA
ACGGATCTATAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:204038..204549+

>mRNA_E-siliculosus-1a_M_contig9.16939.1 ID=mRNA_E-siliculosus-1a_M_contig9.16939.1|Name=mRNA_E-siliculosus-1a_M_contig9.16939.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=642bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:204038..204549+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTACACACAGGCCACCCGAAAGGGGTCAAACCTTCGGCTCGAAGCATC
CTCTCGAACCAGACATTGTCAACAACCCTGTCCGCAGGGGATGCATCTAC
CATTCCGTGCGCCTAATCCGGCTTTGGACAGCACCCCAAAGATGTGCATC
ATACGAAGACTGGCGTCGTGTTGCTGTATCCACAAACATCAAAGTGTAGA
CCGAATTCTGCTGGATCGTCCGTCCTCCCACCTTCTCCTTCTCATCGTGC
AAGGGAATCCACCACTTCGAGAGGCGGGTTTTACCCTGGCGGTTTTGAAG
CAGGAGGAAACGGATCTATAGATGTACACACAGGCCACCCGAAAGGGGTC
AAACCTTCGGCTCGAAGCATCCTCTCGAACCAGACATTGTCAACAACCCT
GTCCGCAGGGGATGCATCTACCATTCCGTGCGCCTAATCCGGCTTTGGAC
AGCACCCCAAAGATGTGCATCATACGAAGACTGGCGTCGTGTTGCTGTAT
CCACAAACATCAAAGTGTAGACCGAATTCTGCTGGATCGTCCGTCCTCCC
ACCTTCTCCTTCTCATCGTGCAAGGGAATCCACCACTTCGAGAGGCGGGT
TTTACCCTGGCGGTTTTGAAGCAGGAGGAAACGGATCTATAG
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