mRNA_E-siliculosus-1a_M_contig9.16924.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.16924.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.16924.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16924.1 vs. uniprot
Match: A0A6H5LDX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDX5_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.450e-19
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:  118 MPWDDDPRRRSRLDGSNRDVDGSDPLPSPAEEPSRRIERPPQQQRXXQ-QLKGKQGDEGPSLA 303
            MPWD+DPRRRSRLDGSNRDVDGSDPLP+PAEEPSRRIERP     XX  Q+KGKQG+EGPSLA
Sbjct:    1 MPWDNDPRRRSRLDGSNRDVDGSDPLPAPAEEPSRRIERPXXXXXXXXXQVKGKQGNEGPSLA 63
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.16924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LDX5_9PHAE1.450e-1982.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:30649..30953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size303
Model size306
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936371.8704336-CDS-E-siliculosus-1a_M_contig9:30648..309511622936371.8704336-CDS-E-siliculosus-1a_M_contig9:30648..30951Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 30649..30951 +
1696251047.7618787-CDS-E-siliculosus-1a_M_contig9:30648..309511696251047.7618787-CDS-E-siliculosus-1a_M_contig9:30648..30951Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 30649..30951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.16924.1prot_E-siliculosus-1a_M_contig9.16924.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 30649..30951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.16924.1

>prot_E-siliculosus-1a_M_contig9.16924.1 ID=prot_E-siliculosus-1a_M_contig9.16924.1|Name=mRNA_E-siliculosus-1a_M_contig9.16924.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=101bp
RSSSSSYTQQQHGSQAASSGGGSRSSSIKQQERQERQRDMPWDDDPRRRS
RLDGSNRDVDGSDPLPSPAEEPSRRIERPPQQQRQQQQLKGKQGDEGPSL
A
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mRNA from alignment at E-siliculosus-1a_M_contig9:30649..30953+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.16924.1 ID=mRNA_E-siliculosus-1a_M_contig9.16924.1|Name=mRNA_E-siliculosus-1a_M_contig9.16924.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=305bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:30649..30953+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGAAGTAGTAGCTCGTCGTATACACAGCAGCAGCACGGCTCTCAGGCCGC
GAGTAGCGGCGGCGGTAGTAGAAGTAGTAGTATCAAGCAGCAGGAGCGGC
AGGAGCGGCAGCGGGACATGCCCTGGGACGACGATCCGCGGCGGCGGAGC
AGGCTGGACGGGAGCAACCGCGACGTCGACGGCAGCGACCCGTTGCCCTC
TCCCGCCGAAGAACCCTCGCGAAGGATCGAGCGGCCGCCGCAGCAGCAGC
GGCAGCAGCAGCAGCTGAAAGGCAAGCAAGGCGACGAAGGACCGTCTTTG
GCAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:30649..30953+

>mRNA_E-siliculosus-1a_M_contig9.16924.1 ID=mRNA_E-siliculosus-1a_M_contig9.16924.1|Name=mRNA_E-siliculosus-1a_M_contig9.16924.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=606bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:30649..30953+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGAAGTAGTAGCTCGTCGTATACACAGCAGCAGCACGGCTCTCAGGCCGC
GAGTAGCGGCGGCGGTAGTAGAAGTAGTAGTATCAAGCAGCAGGAGCGGC
AGGAGCGGCAGCGGGACATGCCCTGGGACGACGATCCGCGGCGGCGGAGC
AGGCTGGACGGGAGCAACCGCGACGTCGACGGCAGCGACCCGTTGCCCTC
TCCCGCCGAAGAACCCTCGCGAAGGATCGAGCGGCCGCCGCAGCAGCAGC
GGCAGCAGCAGCAGCTGAAAGGCAAGCAAGGCGACGAAGGACCGTCTTTG
GCAAGAAGTAGTAGCTCGTCGTATACACAGCAGCAGCACGGCTCTCAGGC
CGCGAGTAGCGGCGGCGGTAGTAGAAGTAGTAGTATCAAGCAGCAGGAGC
GGCAGGAGCGGCAGCGGGACATGCCCTGGGACGACGATCCGCGGCGGCGG
AGCAGGCTGGACGGGAGCAACCGCGACGTCGACGGCAGCGACCCGTTGCC
CTCTCCCGCCGAAGAACCCTCGCGAAGGATCGAGCGGCCGCCGCAGCAGC
AGCGGCAGCAGCAGCAGCTGAAAGGCAAGCAAGGCGACGAAGGACCGTCT
TTGGCA
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