mRNA_E-siliculosus-1a_M_contig9.16923.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.16923.1 vs. uniprot
Match: D8LQY8_ECTSI (SCP-domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY8_ECTSI) HSP 1 Score: 516 bits (1329), Expect = 1.070e-174 Identity = 256/262 (97.71%), Postives = 257/262 (98.09%), Query Frame = 3
Query: 468 MTMTLDIAALTLNMCYESCVHEGSSYFATQDGSRCWCSLESHFDYSSGGVGVCNTWCGGDGSTTCGGSDGSSRDFYKIETGEATLGVSAAGDGVSNSGDPLDRLLELHNAARCMHATGPLEFAEPVAATAKTYADLLASESMCGSAEAAHSTGLGENVFVCAASSSFSGDGAPAAACFSPESAMEAFYDSQVGGGPTSTYGPYATQVLWKSTTQIGCALRACEKDGLTYDILVCRYSPPAGEDTTESEVALEANSKTTCGYD 1253
MTMTLDIAALTLNMCYESCVHEGSSYFATQDGSRCWCSLESHFDYSSGGVGVC+TWCGGDGSTTCGGSDG SRDFYKIETGEATLGVSAAGDGVSNSGDPLDRLLELHNAARCMHATGPLEFAEPVAATAKTYADLLASESMCGSAE AHSTGLGENVFVCAASSS SGDGAP AACFSPESAMEAFYDSQVGGGPTSTYGP ATQVLWKSTTQIGCALRACEKDGLTYDILVCRYSPPAGEDTTESEVALEANSKTTCGYD
Sbjct: 1 MTMTLDIAALTLNMCYESCVHEGSSYFATQDGSRCWCSLESHFDYSSGGVGVCDTWCGGDGSTTCGGSDGLSRDFYKIETGEATLGVSAAGDGVSNSGDPLDRLLELHNAARCMHATGPLEFAEPVAATAKTYADLLASESMCGSAETAHSTGLGENVFVCAASSSLSGDGAPTAACFSPESAMEAFYDSQVGGGPTSTYGPRATQVLWKSTTQIGCALRACEKDGLTYDILVCRYSPPAGEDTTESEVALEANSKTTCGYD 262
BLAST of mRNA_E-siliculosus-1a_M_contig9.16923.1 vs. uniprot
Match: A0A6H5KE93_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE93_9PHAE) HSP 1 Score: 405 bits (1040), Expect = 9.500e-132 Identity = 202/218 (92.66%), Postives = 209/218 (95.87%), Query Frame = 3
Query: 600 YSSGGVGVCNTWCGGDGSTTCGGSDGSSRDFYKIETGEATLGVSAAGDGVSNSGDPLDRLLELHNAARCMHATGPLEFAEPVAATAKTYADLLASESMCGSAEAAHSTGLGENVFVCAASSSFSGDGAPAAACFSPESAMEAFYDSQVGGGPTSTYGPYATQVLWKSTTQIGCALRACEKDGLTYDILVCRYSPPAGEDTTESEVALEANSKTTCGYD 1253
Y GGVGVC+TWCGGDGSTTCGGSDG SRD+YKIETGEATLGVSAAGDG SNS DPLDRLLELHNAARCMHATGPLEFAEPVAATAKTYAD+LASESMCGSAEAAHSTGLGENVFVCAASSSFSG+GAP +ACFSPE AMEAFYDSQVGGG TSTYGPYATQVLWKSTTQIGCALRACEK+GLTYDILVCRYSPPAGED TESEVALEANSKTTCGY+
Sbjct: 28 YVWGGVGVCDTWCGGDGSTTCGGSDGLSRDYYKIETGEATLGVSAAGDGASNSADPLDRLLELHNAARCMHATGPLEFAEPVAATAKTYADVLASESMCGSAEAAHSTGLGENVFVCAASSSFSGNGAPTSACFSPEIAMEAFYDSQVGGGSTSTYGPYATQVLWKSTTQIGCALRACEKEGLTYDILVCRYSPPAGEDATESEVALEANSKTTCGYE 245
BLAST of mRNA_E-siliculosus-1a_M_contig9.16923.1 vs. uniprot
Match: D8LJW7_ECTSI (Pathogenesis-related protein, class 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW7_ECTSI) HSP 1 Score: 129 bits (325), Expect = 3.040e-29 Identity = 95/279 (34.05%), Postives = 132/279 (47.31%), Query Frame = 3
Query: 423 YRHLGCFRRDTADSEMT-MTLDIAALTLNMCYESCVHEGSSYFATQDGSRCWCSLESHFDYSSGGVGV-CNTWCGGDGSTTCGGSDGSSRDFYKIETGEATLGVSA---AGDGVSNSGDPLDRLLELHNAARCMHATGPLEFAEPVAATAKTYADLLASESMCGSAEAAHST-----GLGENVFVCAASSSFSGDGAPAAACFSPESAMEAFYDSQVGGGPTSTYGPYATQVLWKSTTQIGCALRACEKDGLTYDILVCRYSPPA---GEDTTESEVAL 1220
Y ++GCF D + M ++ CYE C+ G+ Y ATQ C+CS +Y G G C+ C G TCGG+ + D YK LG SA D + LL+LHN ARC+H+ PL +++PV ++A +A L + C S+ HST G GEN+FVC + + C++ + AME Y +V + Y +ATQ+LWKST +GC L C G Y LVC+Y P G+D EV L
Sbjct: 56 YEYIGCFTDSQEDRILDDMLTSRTDMSTEKCYEHCMEMGAEYMATQWAQECFCSNNKDLEYDRHGSGAECDMSCTGVEGETCGGNH--AFDLYK-------LGGSADNPPSXXXXXXXDDMAGLLDLHNEARCVHSADPLGWSDPVTSSAAEHAVRLTDQ--CTSS-LFHSTREQRYGYGENLFVCWGTDT----------CYNHDYAMEHLYVEEVQFDDVTDYIGHATQILWKSTKNVGCVLAGCSNGGTPYTFLVCQYDPAGNMGGDDEYRQEVGL 312
BLAST of mRNA_E-siliculosus-1a_M_contig9.16923.1 vs. uniprot
Match: A0A6H5JZI7_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZI7_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 4.880e-18 Identity = 60/163 (36.81%), Postives = 86/163 (52.76%), Query Frame = 3
Query: 768 LDRLLELHNAARCMHATGPLEFAEPVAATAKTYADLLASESMCGSAEAAHST-----GLGENVFVCAASSSFSGDGAPAAACFSPESAMEAFYDSQVGGGPTSTYGPYATQVLWKSTTQIGCALRACEKDGLTYDILVCRYSPPAGEDTT-ESEVALEANSKT 1238
+ L++LHN ARC+H PL ++ VA++A +A+ L ++ S+ HST G GEN+++C S S C+S E AME Y +V YG +ATQ+LWKST Q+GC + C G Y LVC+Y PP E +V L + K+
Sbjct: 241 MTELVDLHNEARCVHNADPLTWSSTVASSAAEHAERLTAQC---SSNLFHSTQEQRYGYGENLYMCWGSDS----------CYSHERAMEGLYYDEVQSDSVLQYGGHATQILWKSTEQVGCVVARCTNGGTPYMFLVCQYDPPGNYGGQYEEQVGLPDSGKS 390
BLAST of mRNA_E-siliculosus-1a_M_contig9.16923.1 vs. uniprot
Match: A0A429V914_9SPHN (SCP domain-containing protein n=2 Tax=Sphingomonas ginkgonis TaxID=2315330 RepID=A0A429V914_9SPHN) HSP 1 Score: 66.2 bits (160), Expect = 9.790e-9 Identity = 52/154 (33.77%), Postives = 72/154 (46.75%), Query Frame = 3
Query: 771 DRLLELHNAARCMHATGPLEFAEPVAATAKTYADLLASESMCGSAEAAHSTGLGENVFVCAASSSFSGDGAPAAACFSPESAMEAFYDS----QVGGGPTST-------YGPYATQVLWKSTTQIGCALRACEKDGLTYDILVCRYSPPAGEDT 1199
DRLL NAAR GP+++ +AA A YA LA G ++ + G GEN+++ FSPE + + + G P + G Y+ Q+LW+ TT IGCA+R+ + YD LVCRYSPP DT
Sbjct: 38 DRLLAQQNAARGALGVGPMQWDASLAAAAAGYAAELARTGRWGHSDRSARPGQGENLWM------------GTRGAFSPEQMVGGWLSEGRFFRAGNFPAVSRTGNWEDVGHYS-QILWRGTTHIGCAIRSSQD----YDYLVCRYSPPGNVDT 174
BLAST of mRNA_E-siliculosus-1a_M_contig9.16923.1 vs. uniprot
Match: A8HMY0_CHLRE (Predicted extracellular protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8HMY0_CHLRE) HSP 1 Score: 67.8 bits (164), Expect = 1.640e-8 Identity = 50/178 (28.09%), Postives = 89/178 (50.00%), Query Frame = 3
Query: 717 TLGVSAAGDGVSNSGDPLDRLLELHNAARCMHATGPLEFAEPVAATAKTYADLLASESMCGSAEAAHSTGLGENVFVCAASSSFSGDGAPAAACFSPESAMEAFYDSQVGGGPTSTYGPYATQVLWKSTTQIGCALRACEKDGLTYDILVCRYSPPAGEDTTESEVALEANSKTTCGY 1250
T+ + D G +L LHN R +H + PL+++ + +TA+ +A+ LA+ C E +H+ G+GEN+ ++ + A AAA + + YD + G +ST +ATQ+LW ++ Q+GCA + + + VC+YSPPA ++ + + + GY
Sbjct: 92 TVNAVLSSDAQQQQGGTSGDILTLHNQYRAVHHSPPLQWSSSLQSTAQAWANNLAAA--CQQLEHSHTQGVGENL-----AAGYESWTAVAAAWYDEIHS----YDYRSGSYSSST--GHATQMLWATSQQLGCATASSAQGCWQRTVYVCQYSPPARAGEMRGKLTSKQSKRVLPGY 256
BLAST of mRNA_E-siliculosus-1a_M_contig9.16923.1 vs. uniprot
Match: B6UG61_MAIZE (Pathogenesis-related protein PR-1 n=2 Tax=Zea mays TaxID=4577 RepID=B6UG61_MAIZE) HSP 1 Score: 65.1 bits (157), Expect = 2.300e-8 Identity = 65/181 (35.91%), Postives = 84/181 (46.41%), Query Frame = 3
Query: 678 SSRDFYKIETGEATLGV-------SAAGDGVSNSGDPLDRLLELHNAARCMHATGPLEFAEPVAATAKTYADLLASESMCGSAEAAHSTG-LGENVFVCAASSSFSGDG-APA---AACFSPESAMEAFYDSQVGGGPTSTYGPYATQVLWKSTTQIGCALRACEKDGLTYDILVCRYSPP 1184
SSR + +G A LG+ SA G S G+ + L NAAR PL + E VAA A+ YA ES G AHS G GEN+F SG G APA AA S + + +S GG Y TQ++W+ST ++GCA+ AC T+ + C Y PP
Sbjct: 3 SSRRSSGLSSGAAALGIALLVLAASAGNAGASYYGEMRRQFLAQQNAARASLGLAPLAWDERVAAYARAYA-----ESRRGDCALAHSAGPYGENLFW------GSGTGWAPAQAVAAWLSERPRYDYWTNSCYGGSMCGHY----TQIMWRSTRRVGCAMVACYGGRGTF--ITCNYDPP 166
BLAST of mRNA_E-siliculosus-1a_M_contig9.16923.1 vs. uniprot
Match: A0A2U3E2Y9_PURLI (SCP domain-containing protein n=2 Tax=Purpureocillium lilacinum TaxID=33203 RepID=A0A2U3E2Y9_PURLI) HSP 1 Score: 67.8 bits (164), Expect = 5.550e-8 Identity = 54/173 (31.21%), Postives = 81/173 (46.82%), Query Frame = 3
Query: 738 GDGVSNSGDPLDRLLELHNAARCMHATGPLEFAEPVAATAKTYADLLASESMCGSAEAAHSTGLGENVFVCAASSSFSGDGAPAAACFSPESAMEAFYDSQ-----VGGGPTSTYGPYATQVLWKSTTQIGCALRA-CEKDGLTYDILVCRYSPPAGEDTTESEVALEANSKT 1238
G G + + ++ L+LHN R MH PLE+ + +A A+ + + C A G+G+N+++ SS+ G A E AM+ +YD + GGG S + TQV+WK+TT++GCA+ C G + VC YSPP L NS T
Sbjct: 97 GSGDGSDSNYIEVTLKLHNDKRAMHGAAPLEWDDKLADMARAH------KYRCEMEHDAQERGVGQNLYM----SSYPGGEAA-----QMEGAMKGWYDDEEPLYNYGGGDFSMATGHFTQVVWKATTKVGCAMYGGCRHGG---KMTVCNYSPPGNMAREFQANVLPPNSGT 251
BLAST of mRNA_E-siliculosus-1a_M_contig9.16923.1 vs. uniprot
Match: UPI001ADC4216 (pathogenesis-related protein PR-1-like n=1 Tax=Oryza brachyantha TaxID=4533 RepID=UPI001ADC4216) HSP 1 Score: 62.8 bits (151), Expect = 9.200e-8 Identity = 56/157 (35.67%), Postives = 69/157 (43.95%), Query Frame = 3
Query: 726 VSAAGDGVSNSGDPLDRLLELHNAARCMHATGPLEFAEPVAATAKTYADLLASESMCGSAEAAHSTGL-GENVFVCAASSSFSGDGAPAAACFSPESAMEAFYDSQVG---GGPTSTYGPYATQVLWKSTTQIGCALRACEKDGLTYDILVCRYSPP 1184
V AA G L+ HNAAR PL + E +AA A+ YA + G HS G GEN+F G PA + S A YD+ GG S G Y TQ++W+ TT +GCAL AC TY VC Y+PP
Sbjct: 2 VHAADAGGRGGSSLASGFLDAHNAARRQVGVAPLRWDERLAAYARRYA-----AARSGDCALVHSRGAYGENLF-----HGSGGGWRPADVVAAWVSRERALYDAAANSCRGGDASACGHY-TQIVWRRTTAVGCALAACAGGRGTYG--VCSYNPP 145
BLAST of mRNA_E-siliculosus-1a_M_contig9.16923.1 vs. uniprot
Match: A0A7W0VNQ2_9DELT (SCP domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W0VNQ2_9DELT) HSP 1 Score: 60.5 bits (145), Expect = 7.850e-7 Identity = 53/169 (31.36%), Postives = 75/169 (44.38%), Query Frame = 3
Query: 747 VSNSGDPLDRLLELHNAARCMHATGPLEFAEPVAATAKTYADLLASESMCGSAEAAHSTG-LGENVFVCAASSSFSGDGAPAAACFSPESAMEAFYDSQVG-----GGPTSTYGPYATQVLWKSTTQIGCALRACEKDGLTYDILVCRYSPPAGEDTTESEVALEANSK 1235
V+ +GD +RLL HN R H PL ++ +A A+ +A L + + AHS G GEN+ A PES + +YD G G + G + TQV+W+ TTQ+GCA+ C+ + DI VC Y PP + E L K
Sbjct: 22 VAPAGDA-ERLLAAHNKVRAQHCAQPLTWSAKLAQFAQQWASSLRDQGC----KFAHSGGKYGENL------------AAGTTGAMDPESVVAMWYDEVKGYSFKQPGFSMQTGHF-TQVVWRGTTQVGCAMSQCKGN----DIWVCEYDPPGNWEGKYREQVLPVGCK 168 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.16923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig9.16923.1 >prot_E-siliculosus-1a_M_contig9.16923.1 ID=prot_E-siliculosus-1a_M_contig9.16923.1|Name=mRNA_E-siliculosus-1a_M_contig9.16923.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=332bp MVTRRSGVAALCLASWTATAVVNGHNGDPKQGGDGQQSARGGGSAGRKRRback to top mRNA from alignment at E-siliculosus-1a_M_contig9:14964..25817- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig9.16923.1 ID=mRNA_E-siliculosus-1a_M_contig9.16923.1|Name=mRNA_E-siliculosus-1a_M_contig9.16923.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=10854bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:14964..25817- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:14964..25817- >mRNA_E-siliculosus-1a_M_contig9.16923.1 ID=mRNA_E-siliculosus-1a_M_contig9.16923.1|Name=mRNA_E-siliculosus-1a_M_contig9.16923.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1992bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:14964..25817- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |