mRNA_E-siliculosus-1a_M_contig890.16919.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig890.16919.1
Unique NamemRNA_E-siliculosus-1a_M_contig890.16919.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig890.16919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig890contigE-siliculosus-1a_M_contig890:141..1138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size195
Model size196
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig890.16919.1prot_E-siliculosus-1a_M_contig890.16919.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig890 141..1138 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936369.886819-CDS-E-siliculosus-1a_M_contig890:140..2171622936369.886819-CDS-E-siliculosus-1a_M_contig890:140..217Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig890 141..217 -
1696251046.994543-CDS-E-siliculosus-1a_M_contig890:140..2171696251046.994543-CDS-E-siliculosus-1a_M_contig890:140..217Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig890 141..217 -
1622936369.9001875-CDS-E-siliculosus-1a_M_contig890:733..7721622936369.9001875-CDS-E-siliculosus-1a_M_contig890:733..772Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig890 734..772 -
1696251047.0044951-CDS-E-siliculosus-1a_M_contig890:733..7721696251047.0044951-CDS-E-siliculosus-1a_M_contig890:733..772Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig890 734..772 -
1622936369.9134333-CDS-E-siliculosus-1a_M_contig890:1059..11381622936369.9134333-CDS-E-siliculosus-1a_M_contig890:1059..1138Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig890 1060..1138 -
1696251047.0210571-CDS-E-siliculosus-1a_M_contig890:1059..11381696251047.0210571-CDS-E-siliculosus-1a_M_contig890:1059..1138Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig890 1060..1138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig890.16919.1

>prot_E-siliculosus-1a_M_contig890.16919.1 ID=prot_E-siliculosus-1a_M_contig890.16919.1|Name=mRNA_E-siliculosus-1a_M_contig890.16919.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=65bp
LSVTCPSEPAVQLLGHFYLGLLSGHEAPAPTPSPADVSTGDITSTSAATD
PKRFTWGPSVVAMAV
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mRNA from alignment at E-siliculosus-1a_M_contig890:141..1138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig890.16919.1 ID=mRNA_E-siliculosus-1a_M_contig890.16919.1|Name=mRNA_E-siliculosus-1a_M_contig890.16919.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=998bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig890:141..1138- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTGTCCGTCACCTGCCCAAGTGAGCCGGCGGTACAGTTGTTGGGGCATTT
TTACCTTGGTCTGTTGAGCGGACACGAAGGTGACTACCTGTTGGTCTTCT
TGCTTGAAGGATTAATATTCTTGCATTATAGGGGACATGGTTTCCAATGT
AAGGTTTGTTTTTTGGGGGGGGGGGGCGTACTCATTCGTTGCTTGCCTTA
GTCATTTGACCATTGACTAAGGTTTGTTTTGGGGGGTGGGCAACGTCGAG
CAGGGGCTCAGCGAACGTGGTCTGTAGGAGGAGTAGGAGAACTGTTCGTG
TTGAGTACATCTTGCCCCGGCTTCCCCTAACTTCCCGGCCTGCGTCTGTC
TGCGTTCACTGCGCAGCACCCGCTCCCACACCTTCACCTGCTGATGTGTC
GACTGGTGAGTGGCCGGAAAAGCGTTCGGAGGGTGAAAAAATTTAGGCGA
ACCCGTGTCGACGCCGGGAGCATGTCAATAGTTTGGGCAGGTGTGTAGAT
AGCTGAAAATTGAATTCGCGTTTGGACGCCGCCCTTGATATCACCGCTCG
GATCGACGCCGATGCGATTATAGCGTTGGATGGTACCGTGAGAGGAAATC
GAATGTGAATTAATGCGGTTCTATGGTGTGTTTCTCGAACGCCAACGAAC
GGTGAAACTGCAGCTAGCTGCGTGTCGTGTACGGTACGTCCTACCTGGTA
CCGTTTACGAGGTGTTGCAGGCACCTTTTGGATCACGATATACACCTGGT
CGGCCCACCGCAGTAGTAAAGAAGCGACATGTTGGCTTGGGGCTCAAACG
TCCCATCTGCATGCATCAAAAGCGGGTATCCGATGGATCTCACTCTGCCA
TATCATGTGCAGGCGGAAACAACTTCCCCGCCTACCTCTCACCGCCACAT
GCTTGCCCTACTTGCGTTCAGGCGATATCACCAGTACGTCAGCTGCCACT
GATCCCAAACGGTTCACTTGGGGGCCCAGCGTCGTGGCCATGGCAGTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig890:141..1138-

>mRNA_E-siliculosus-1a_M_contig890.16919.1 ID=mRNA_E-siliculosus-1a_M_contig890.16919.1|Name=mRNA_E-siliculosus-1a_M_contig890.16919.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=390bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig890:141..1138- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTGTCCGTCACCTGCCCAAGTGAGCCGGCGGTACAGTTGTTGGGGCATTT
TTACCTTGGTCTGTTGAGCGGACACGAAGCTGTCCGTCACCTGCCCAAGT
GAGCCGGCGGTACAGTTGTTGGGGCATTTTTACCTTGGTCTGTTGAGCGG
ACACGAAGCACCCGCTCCCACACCTTCACCTGCTGATGTGTCGACTGCAC
CCGCTCCCACACCTTCACCTGCTGATGTGTCGACTGGCGATATCACCAGT
ACGTCAGCTGCCACTGATCCCAAACGGTTCACTTGGGGGCCCAGCGTCGT
GGCCATGGCAGTTGCGATATCACCAGTACGTCAGCTGCCACTGATCCCAA
ACGGTTCACTTGGGGGCCCAGCGTCGTGGCCATGGCAGTT
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