mRNA_E-siliculosus-1a_M_contig89.16917.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig89.16917.1
Unique NamemRNA_E-siliculosus-1a_M_contig89.16917.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig89.16917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig89contigE-siliculosus-1a_M_contig89:682968..690672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size177
Model size179
Exons2
Ec32 orthologEc-06_004900.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936355.4654698-CDS-E-siliculosus-1a_M_contig89:682967..6830001622936355.4654698-CDS-E-siliculosus-1a_M_contig89:682967..683000Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 682968..683000 -
1696251040.340756-CDS-E-siliculosus-1a_M_contig89:682967..6830001696251040.340756-CDS-E-siliculosus-1a_M_contig89:682967..683000Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 682968..683000 -
1622936355.485245-CDS-E-siliculosus-1a_M_contig89:690528..6906721622936355.485245-CDS-E-siliculosus-1a_M_contig89:690528..690672Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 690529..690672 -
1696251040.3510563-CDS-E-siliculosus-1a_M_contig89:690528..6906721696251040.3510563-CDS-E-siliculosus-1a_M_contig89:690528..690672Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 690529..690672 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig89.16917.1prot_E-siliculosus-1a_M_contig89.16917.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig89 682968..690672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig89.16917.1

>prot_E-siliculosus-1a_M_contig89.16917.1 ID=prot_E-siliculosus-1a_M_contig89.16917.1|Name=mRNA_E-siliculosus-1a_M_contig89.16917.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=59bp
MFDGPCVWVGATRTPNLPCFFALASPPLLSTRSPLLSGPIKGARLDCQVD
KKTTVRTTQ
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mRNA from alignment at E-siliculosus-1a_M_contig89:682968..690672-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig89.16917.1 ID=mRNA_E-siliculosus-1a_M_contig89.16917.1|Name=mRNA_E-siliculosus-1a_M_contig89.16917.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7705bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:682968..690672- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTTCGATGGGCCCTGTGTATGGGTGGGCGCCACACGCACACCCAACCT
TCCCTGCTTCTTCGCTCTTGCTTCTCCCCCCCTCCTCTCCACACGCTCAC
CACTTCTCTCGGGACCGATCAAGGGGGCACGCCTCGACTGTCAGGTAAGG
CTGCTTGCCTTTCTCGTGCGGTGTTGGGGTTCGGCGTAGTCGCCGGCGTG
GGTGGCGTGGTGGGGTGTTGTCATTGTTTTTTGGAGTTGGTTGTAGCAGA
ATCGGTGACACGCTACATAGGAGTAGACGTCAAGAGCAGCCATCTGCCCA
AAAGGTCGGAAAAGGGCATTGATTTGCACCCTTGCGACAAACCCTTACCT
GCCTCTAATAATGGCGGAACACCTGCCTCGCGTTTGAAGGCTTACAGCAG
TTGCGTGTGCGTCATCCCCTGAAGCCATGGCACGCTCAAGGCATCACAGT
TGTTTTCCGGGTGAATCGCGGTTCCAAATGTCATGAGTGGTCCGCTCGTT
GGCAGCGTGTCCTCTCCCGGCCATCGTGGTTGCGCCGTTTGTTGTTGCTG
TTGCCGGTGATAGAATACTGCTGTTGGCGTGTTGTGTCTTCGCATGCATA
CCCGGTTCGGCCTCTACTAGTTGCTTTCTTCTCCCACGTTCTGGCGTGCG
CTTAGAAATGACTCTGGGTGGTCAGGGAGCGAGCTCATGAGTTGGGCGCC
GAAATGCACCCCATATGTGTGGCTTTGTGCTTGTTTGCACGGCTCTGGCA
ATATCCGTTTCTTTGTCAGTGCCTCAGGAGTTTGGCTGCACAAAGCAACA
CGGATAGAAGCCCCACCCATGTGCGCACCCATGCGCTCGGACTTTAGAGT
AGCGTTAGGAGGTAGGGCGCCCCAGGGCAGCGATTGCCCCTGCGCAGCAC
CACATGCAGACTGCGCAGGGATGCGAGACAGCTGCCTCTGAATTTTCAAA
CTTTCGGATGAATAATTCTTGTCGATGCACACCGCGTGATTGTTGTTCGT
GTTCCGACGACTTTAGCTACATATATTCAGCACCAGGCTTTCTTGGAGGT
GATATGGCCGAAGGGTGTCAAGTCGTAGGTAGGTGTAGGTCGATACAGAG
GGCAGGCAGCTTCTCTCCGATCATTGGCGATTTGGCAGTTCGGGCCCAAC
CCGAGGTGCCTAGACGCATGTGGTCTGCCCTCTGACGCCAGCAGCAGTGG
CATGTGGAACGATACGTATTCAGTACATCCGTGGTCTCCCGAGTCCCCAT
GGTAATCGTTGGATATCCCCTCTAGCGCGAGTTGTCGTGGTGTACTGCTG
CACTGTACGGGTAAACGGCAACGTCCGTAGTGCGTTGCTGCAGCTTTGCA
CTTCCATATGCACAGATTAAATTATGTGTCTTGCGTAGTCTAAAATATCG
TGAGCGACGCACGCACCGAGCACATTGTCCGTCAACTATAATAGAGTATT
CGAACACAGAGTATTCGCACACAGCAGAAAATCAGAAAGCCTCCAATTTT
GCCACGCGCAGGGTCTCCGCGCCTCATCCCGACGACGTCATGTCGAAGGC
TGATTTGCGCCAATAAAATTGGTCTATGGCGTGGTTGTACGGTTACAGAT
GACAACCCTGCTTTTTTGTCCCCCTCATGTTTCCTGCACTTCTTGCCTCA
GCTTTTATTGCTAACAGCAGTACAACAGTGTTCAGCCGCCCCATTCCCGC
GTCGCGTCGACGTTGAATTCGAGTTGCGCACGATCTTTGTCACCGGACTC
CTGGACACCTGGGAGTTTCGTTTTGGTCAGGCTGTGTCTCATAGCAAAAT
TGCCCACACAAAAACTGGCATAAAAAAGATCCGAAAAGAGGCTCAGATTT
TTTTCGGCATGACGTGGCAGCAGCCCCCCGCTGATTGGCCGAAAGACTCG
CGTGCGCCGTTCCTCACGCCGCTTCTTCCATTTCGTCTACACGAAAGAAA
AGTATGCATTGATGTTGTTGTTGCTTGGTTGGCTGCTGCTATCATGCAAG
GTGCCAGGTTCATCTAGCGGGGGTGTTGTCACCGCAGAGAAGTACCCTGT
GTAAAGGCTTTTCTTGCAAACAAACTCTCAGCCGCTTGTCCAATCAAGCA
AAGAGAGAGAGAGGTGTCGGTTCATTCAGAAGCACCTGTGGACCAGCAGC
ACCGCAGCACCAGCAGCAGCTTCAACCGAGAACAATCACCCTCACACAGC
GACTTTTTAAGAAGCATTACAAACCGCAACAGCTGTCTAGAGGGGGTGGC
GCCGATAGAGAGTACCACAAAGCAACTTTTGGGCCACCTCCCAGCAGTTC
GAGTGGTCTACACAGCTCATGGTCTGGGTGTTCTCCTGAACTGTTTGTAG
ACGAGAAAGTTGCTCTATTTTGGGGCTGGTGATACGCATACTTGTCTCAT
CCCACCCCTTCTTTGTCGGTTCCTTCCACAGCGATCACCTCACACCTGTG
GCCAAATGGCTCACCCTGTGCGGACCTTGCAGCCAAATAGACCCTGTACG
GACCCTCTGACACCCTGCGAAGGTGATCGGTCCCCAGAAGGTACACGGGC
AGGGACCCTGTCAGGGTGTCGACCCTGCCAGGGTTGTATAAGCAGATCTG
CACCGTGAAAGGCACCGTGAATTGCGACCGCCAAGAAGGGAAGATCCTTC
CGCGTACACGGCTACTACTCTTCTTCTGCTGCTTTGCTGTAGCTGCGAAA
AAAAAAGCTGTGGGGATTGATTTTACAATCTTGTGTGCGACGTGGATATA
TATATACCGTTGTCGACAGACACCCATATATATACTGCTGTACGTACATT
CTGACAGTGATATGTTATAGCCCTTCCTCCTCTCTCTTTCGCAATACGTA
CTATAGTAGGGGAAGCTCCACCCACTCGCTTGCTAGCAGCATTGTTGTTC
ATGGCAGAATGACAGCTCGCTTGGCGGATGTGCGGATGGGTGAAGCGGCG
GGACTGTACTCTGTGCTCACGGAGCCCCCTTGTACCCGTCATATCCTAGC
CGCCGTGCCCCTGAGGCTGCTGCACTTGGCAGGCCACAGGCCGGGTTCTG
GGTTCACCCCAGCGCACCGCGCACCACGCACCGTCATCAGAAGTGCCGAG
TGATATCGACACAAACTGGATGCCAGCTCGTCTTCTCGCTACGCCGACGG
GAGTCGGCAATACGGTGCAGTCCGGCGTTGTTGGCGGGAAAGCATGTCTA
CTGCTGTCGAGAGGTCCAAACTTCTCGGTGAACCAGTAGCCGGCCACCTG
ATGGTGAAGTGGTCGCCTCAACAAGAACAGCAGGCCAAGGCACACACTCG
GGAGTGGTCGGGCGCAGCATTCCCGCGTCATCTCAATCTCAGGTGAAGGC
TGCCTCCTACGGATGGACATTCACGTGCACTCACACACTTTGTCATCTCG
AGCCCGCAGCCACGTGAAAAAACTTGCAAATTCCACTTTCAGTCTAATTT
AATTGCTCAACGGTATCCTCACAGCAGCAGTAGCTGCTTCGTGCGTGCCG
CGTATGCTGCGCTCCCATGCTTGCACGCTTGCGCACTTGCCCGCCTCAAA
AATCACCTTTGTGGCAAAGGTCCTCTGGACAAATCCCTTGGCACAACTCG
TAGAAGAGAAATGTACAAATAGTTACCGTGTGGTCGCGTAAGATACCACA
CCCTCCGGGTCGACAGCTCGACTGCTGTAGTCCACAATAAGAGGGTGCCG
CACCCACGGTCTGTTTTCCGGAAAGCTCTCGAGATGACGGTTCCAACCCC
GCCATTTTTGGCCCAGTCCCTATTTGTGCTGTAGACTGTAGTCGAGCTTT
GATAATCGGTCCAGGGGGTGTGGTATTTTATACATTTTGTGCGACGTACG
GTAGGAGACTAAACAACTTGCATGCAATGGGTAATTTGTAATTTGACAAT
GATACACGCAATGTAGGTCTCCAAGCTGTGGCTGCTGTAACTCGCACCGG
TTGCGATTTCCCCGAAAACCATAAATCATAAACTTGAAAAGGAGGACAAA
GGGCAAAACGCGAATATAAGCCTGCGACTTGTTTAAACAATTGTTGTAGA
AGGGGCCTGCGACGCGTTCAAATGCATTTCGTACCATGTACAACGTATAC
CATACCTGTCGTTTTTCTACTTCGCCCTACGTGGGTGGTACCAAGACAAA
TATTACCCGTTTGTTGCTGTCTGCTGTATTCATGTACCATGACTACTGAT
GATTCGACGTTGCTTGTACCGCCCCTCTCATCTCCAGCTACCTCATCTTC
CAAATAGACCATTTTTTTCGGTCGCACGGATTGTTGCCCACTGGAGACGA
CTCTCATGTCTCCCACGCCCAACGGGTTGATGCCGTGGTACTCAGAAGGC
GTGTGTGGTACGGCCCCAAGCAGAATAAAAGTTCCCACGAGCTCTTCCGC
TTCTCTGCTGCGGTGCACACATTTCGTTCTCTTTTGGTATTCCCACCCGT
GCTTCGTTTCTTGGGATCCCGCGATCATTGGAAATTGTGTTCGATCCACG
GCGAACCGTCTGTTGAGCACAGTTTAGCATCCTTTGATTCAACGCGGGCT
GTCCACGGTTTCTTGGGCCTTATCACAACCCTCCAATTTTTTTTTTCAGC
CCTTTCCATGTCTCTCATGGTTGATCGTCGTTAAGGTACATTGCCCACGT
TTCTTGTTCGTTTGCTTTTTGGTGCTCGGTGTGCGAAGACCCAACGCAAA
GCGCCCCTTTACCCCCTGTTGTTGTGGCGGCTGAACCTCATGGCAGCAAT
CCACACCATTGAGGTCGAGCTGCTTCCTACGCTGGCGAGCCGCAAGTCGG
CGAACATTGACAAGGGAGAATTTTCAGGAGAATGGCGCGAGAATGTACAC
CGGCATCCAGACCGTATTCAAGGACATGTGAGCAACGAGTAGATGCGTCG
CTGCTACTGACTTACCCGCTGTGGCCTTGTGTAGTTTCGATGGAAGCAAT
TAGACGGACATGATATCGCCTGTTGGGAGTCTATCCAACTGTGTGTTCGT
GACATGAACCGTTTAGGCGATGAGGTGTTTGTGTCCTGTAGCGAGTGCAG
ATAGATGTGGTCTTACACAGCCGCACGTTTCTGTTGTTCTCGTTCGTTCG
GGGGTGCGCCCTGTGTTGCTTGTTGCTATTTCTAGCACCCTAGGGACATG
GTGTGGCGATTCACCAAGGAACATGTGGCTTCGACGAGTGCCTACTGTCG
AAGGGGCGACTTTTGGGACAGGACCGGCTTCACGAGTGCTTCCTCGCGCA
GGTGACAGAATGGACGTTTGCGTGTTTGCACGTTGTACTTCTTTTTTTAT
GGCAGATTTCCCTTGATCACTACCAACTTCCAGGGCACTTGATTTCTTCC
CACGCCTAGGCCAGGAGTAATCCTGCGGCATTTTTTCTCCCGAATTCCGA
CGCATCGCTTTTCCCGCAATGCTACAAGACGCACTTGTGTATTGGCATAG
GGAAGGGGGTGCTTAACCCGACGTATGCTTGCGTCGGAAGTGGAGGCTAC
TGATGCTTCTACTGTGTGACCTGGGACCGGAGCTGTGACGAAAAGAGCGC
ACCAACTATGGTCTTGGTAGAACCAGCGAGCAGTATTTAAAGAATGCCTC
AGCATGTTTCAGCACAGTACTTTGGCCCATTCGGCCGGAAAAGTGGGCAA
CAGGTTGAAATCCCCTCCCGTGTTCTTGATCCACGAAAATGAGCAACCTC
TCCACCACCTTCGGGGTAGTTGTTGTCGGCGTCAACGATTCCCCAGCCCC
CCGGGGCGAACGTGAAATAGGTACAGCGGTATGCCTTTGGGCAATCTACA
GCCTGCTTCACCTCCGCCGCAGCGTAGAAATAATCGTTCGCATCCTGAAC
GTATGTCTGAAGGTACGCATTTACCGTACACGCATGCTCCTTAGGCTCAT
CACCCCATCTGCCTTCCCGTGGTTTGCCCTTTCCTTCGTTACGTTCGGCC
ACAATTCTTGTACAACATGCTGCACGACAGGTCACGGCGCACTCGTCACC
ATGCCTCCGCCATCCTCACGGAGGGTGGAACCCCGACATCATGCGCTTTC
TCTCCCCATTTGCGGACGGGAAGGACAACCTCATCGTGAAGAGACCCTGC
TCGAAGACGTGCACTTCGACGTTGCTGACCTCGGGCCTGTTCGTCGACGA
CATGAAGTGATGGCTGAGTGTTGTAAGCACTCATTCCTTCTTCATGAAGC
TGGGCTTCCGCGCGGGGTCGCGAATTTGTTGGGAATACTCTGGGGCGTGG
CACTTTGTATGACGGTCGACTATGCTCCAGCCGTAGATTGCCCATGGTCA
GCGTATTCGTCAGTTTCCAGCCCAATATCGCGATGCTGTGGTTTGGCTGC
TTGTACCTTATGTAGGTATTAACCGACCGGTAGGCTTAGGCACGTGCGTA
AGTTGGAACATATTATAGTTGATATTTCGTCCGGCAGGGGAGAGGGCGCA
ACCAAGTATTGCGGCGTGGACGGCAAAGAACGTCATACTGTAACAACTGC
TGTAGCTTTTTTTTGCCATTCGTGGAGCACATATATTGCAAAGAGTACCG
GCTTGAGCGGGATGGAGAGGGTTAGAGTTTGCTTGAGTGCCGTTTTTGAG
AAGTATGACAAAGGGAGGCGTTGTAAGTCTGTGATGTGCATCATGTGTCC
TGGTCTCCTTGTTGATTTTCATGGTTCAATGCCGTGTATTGTTCCAACAA
AAGCAAGACAACTGTAGTCACCTTTTTTCATGACCAAGTTCTTAGATTTT
GATTTTTTTAAAGAAAAATACAAATACAAACACAGAAAGACTACCCGTTC
GAGACAGAACCAAGTCGAAAGGGATTTGTTGGAGTCTTTACAGTAGTGAG
TGGGCAGAAACCCGGCTGGATACTGGGCTTTTTGTGTCTGTTTAAGCCTA
CACACTGAATTTTTGTCAGCGATGCCAGCACAAGTCCTTAGACTATGTGA
GCGCGTTCCGTATTTCGCACGGTTCAGCCACGAGACGATGAACATGAATG
AAGTGCAGGAAAGTCCCGCGATCACGATGGCAAATGAAAAAAAAGAAGGT
ATCAGTACCGACACCACCAAATCGCTGCCGCAGTTTGCTGCAGGGTGCGA
TTCGGGCCACCCTGGCAGGGTGGACCCTGGCAGGGTGTCCATTGTAGACG
CTGCAGGCGGATCATCCTTAGGCCGTCCACAGGGTAGGGTACCTTGGCAG
GGTGGTTTTTTGCCACCCTGCCAGGGTAGCCATTTGGCCACCGGTGCATA
CATATACATATATATGCTGTATGTTGACGCACACCGCCCGCATCGGAGGA
GTAGGAGGTCTGTCTGTCCAGGTGTGGTGCAGGAGGCTCGGACGAGTCTG
TACCGTGCGATGCCATCTTCTTGTGGTTTACTACTCTGTTGCTGCTAAAT
ATCTGGACCTTTTGAACAGGAACCCACGCCTCAGATAAAGGGAGGTTTTT
GTCTGAGCCGTGGGCGGAAAGTGGGCCCGTCTCAGATGAATAATGACGTT
ACCGGCTACATAATCCAAGAAAGCTGACCCTCTCTTTGTCTGACCCAAAA
TAAGAATTCCGAAAGGGTCTACGGAACACTTTCTCAAACCAACCTCATCA
TGTACGCCTCTTTTTTGTTTGTGTGCTGTCCCTGCTATGCTTTGTGATGC
TTGGTGCTGCCGGGTCGACCAGGTGGACAAGAAGACTACGGTCCGCACCA
CACAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig89:682968..690672-

>mRNA_E-siliculosus-1a_M_contig89.16917.1 ID=mRNA_E-siliculosus-1a_M_contig89.16917.1|Name=mRNA_E-siliculosus-1a_M_contig89.16917.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=354bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:682968..690672- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTTCGATGGGCCCTGTGTATGGGTGGGCGCCACACGCACACCCAACCT
TCCCTGCTTCTTCGCTCTTGCTTCTCCCCCCCTCCTCTCCACACGCTCAC
CACTTCTCTCGGGACCGATCAAGGGGGCACGCCTCGACTGTCAGATGTTC
GATGGGCCCTGTGTATGGGTGGGCGCCACACGCACACCCAACCTTCCCTG
CTTCTTCGCTCTTGCTTCTCCCCCCCTCCTCTCCACACGCTCACCACTTC
TCTCGGGACCGATCAAGGGGGCACGCCTCGACTGTCAGGTGGACAAGAAG
ACTACGGTCCGCACCACACAGGTGGACAAGAAGACTACGGTCCGCACCAC
ACAG
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