mRNA_E-siliculosus-1a_M_contig89.16915.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig89.16915.1 vs. uniprot
Match: A0A6H5JZK4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZK4_9PHAE) HSP 1 Score: 213 bits (543), Expect = 3.060e-62 Identity = 114/128 (89.06%), Postives = 117/128 (91.41%), Query Frame = 1
Query: 1039 GCEDAADACAADRECQECRLEATSEEQLEWESCLASYEYAATCSAVSATSCCFDVLSPKNCLANPKFVSYSECTVQAASEQACSSLSCRHTETMATSTSDTSAAWSGKRPVCADRAATMVAAFFALVG 1422
GCEDAADACAADRECQECRLEATSEEQLEWESCLASYEYAATCSAVSATSCCFDVLSP +CLANPKFVSYSEC VQA SEQACSSLSCRHTET TSTS+TSA SGKRP RAAT+VAAFFALVG
Sbjct: 77 GCEDAADACAADRECQECRLEATSEEQLEWESCLASYEYAATCSAVSATSCCFDVLSPNDCLANPKFVSYSECIVQATSEQACSSLSCRHTETTTTSTSETSAVGSGKRPASIGRAATLVAAFFALVG 204
BLAST of mRNA_E-siliculosus-1a_M_contig89.16915.1 vs. uniprot
Match: D7FST3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST3_ECTSI) HSP 1 Score: 193 bits (490), Expect = 5.650e-56 Identity = 105/117 (89.74%), Postives = 107/117 (91.45%), Query Frame = 1
Query: 1087 ECRLEATSEEQLEWESCLASYEYAATCSAVSATSCCFDVLSPKNCLANPKFVSYSECTVQAASEQACSSLSCRHTETMATSTSDTSAAWSGKRPVCADRAATMVAAFFALVGALQRT 1437
ECRLEATSEEQLEWESCLASYEYA TCSAVSATSCCFDVLSP +CLANPKFVSYSEC VQAASEQACSSLSC+HTETM TSTSDTSAA SGKRPV RAA MV AFFALVGALQRT
Sbjct: 55 ECRLEATSEEQLEWESCLASYEYAGTCSAVSATSCCFDVLSPNDCLANPKFVSYSECIVQAASEQACSSLSCKHTETMTTSTSDTSAAGSGKRPVSIGRAAIMVVAFFALVGALQRT 171
BLAST of mRNA_E-siliculosus-1a_M_contig89.16915.1 vs. uniprot
Match: A0A6H5KI88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI88_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 1.570e-9 Identity = 34/90 (37.78%), Postives = 56/90 (62.22%), Query Frame = 1
Query: 79 VALVALLAVGAANGINTCVDSTSSGR-QFKCGADVTTINLSNCGLTDADSVDIGSCFDNAGRDSIKIIYLTDNSLTTLPADVFEDLGALE 345
+ L+ L + + +N C+D+T +G Q + G T++LS+CG+TDAD D+ SC + AG ++I ++L +N LTTLP +F L L+
Sbjct: 7 IILLGLSTLLNTSAVNVCLDTTDAGNCQIEAGE---TLDLSDCGITDADFDDLASCLEAAGPEAITTLFLYENELTTLPEGIFGSLTGLQ 93 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig89.16915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig89.16915.1 >prot_E-siliculosus-1a_M_contig89.16915.1 ID=prot_E-siliculosus-1a_M_contig89.16915.1|Name=mRNA_E-siliculosus-1a_M_contig89.16915.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=41bp MATSTSDTSAAWSGKRPVCADRAATMVAAFFALVGALQRT*back to top mRNA from alignment at E-siliculosus-1a_M_contig89:663141..679189+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig89.16915.1 ID=mRNA_E-siliculosus-1a_M_contig89.16915.1|Name=mRNA_E-siliculosus-1a_M_contig89.16915.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=16049bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:663141..679189+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig89:663141..679189+ >mRNA_E-siliculosus-1a_M_contig89.16915.1 ID=mRNA_E-siliculosus-1a_M_contig89.16915.1|Name=mRNA_E-siliculosus-1a_M_contig89.16915.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=246bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:663141..679189+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |