mRNA_E-siliculosus-1a_M_contig89.16914.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig89.16914.1 vs. uniprot
Match: D7FST4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST4_ECTSI) HSP 1 Score: 269 bits (688), Expect = 4.750e-80 Identity = 307/414 (74.15%), Postives = 314/414 (75.85%), Query Frame = 2
Query: 47 MARTPGTYPLLASLYLLVAATVVVLHADAQRDCTGTSQACVASAFCTECTSATTDDSYVDCLAGIGAEIGSCEYTEQQACCLNEVSGIDCVSDPVTFEFFECLYDPTEACDGGWTCSGDTTDGXXXTPAPA-AASGTDTPVAGXXXXXXXXXXXXXXXXXXXXXGDETMAPSGTDDGMSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRALDITPSPSSAAAMPSATTTTTSMAGESETMAPTAAGXXXXXXXXXXXXXTG--EAGGGSAPTASGADETEAPTSAAXXXXXXXXXXXXXXXXXXXXXXXTSGGRGLLSSSVTTVGGVVAGLLAFSAAAVVV 1279
MARTP P LASLYLLVAATVVVL+ADAQRDCTGTSQACV S C ECTS T+ DS++DCLAGIGAE GSCEY EQQACCLNEVSGIDCVSDPVTFEFFECLYDPTEACDGGWTC+GDTT+G TPAPA AASGTDTPVAG XXX D+TMAPS TD GMSP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRALDIT XXXXXXXXXXXXX EAGGGSAPTASGADETEAPTSAAXXXXXXXXXXXXXXXXXXXXXX TSGGRGLLSSSVTTVGGVVAGLLAFSAAAVVV
Sbjct: 1 MARTPAAPPRLASLYLLVAATVVVLYADAQRDCTGTSQACVESDVCLECTSFTSGDSFLDCLAGIGAEFGSCEYVEQQACCLNEVSGIDCVSDPVTFEFFECLYDPTEACDGGWTCNGDTTNGGDTTPAPAPAASGTDTPVAGGXXXAETAAPAAPTAATTSAGVDDTMAPSATDGGMSP--------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRALDITTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGGGSAPTASGADETEAPTSAAXXXXXXXXXXXXXXXXXXXXXXTTSGGRGLLSSSVTTVGGVVAGLLAFSAAAVVV 388
BLAST of mRNA_E-siliculosus-1a_M_contig89.16914.1 vs. uniprot
Match: A0A6H5K7K6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K6_9PHAE) HSP 1 Score: 173 bits (438), Expect = 8.200e-46 Identity = 91/138 (65.94%), Postives = 98/138 (71.01%), Query Frame = 2
Query: 167 VASAFCTECTSATTDDSYVDCLAGIGAEIGSCEYTEQQACCLNEVSGIDCVSDPVTFEFFECLYDPTEACDGGWTCSGDTTDGXXXTPAPAAASGTDTPVAGXXXXXXXXXXXXXXXXXXXXXGDETMAPSGTDDGMS 580
V S CTECT T+ +S+VDCLAGIGAEIGSCEYTEQ ACCLNEVSGIDC+SDPVTFEFFE YDPTEACDGGWTCSGD T+G TPAPAAA GTDTPVAG D+ MA S TD G+S
Sbjct: 18 VESDVCTECTFFTSGNSFVDCLAGIGAEIGSCEYTEQLACCLNEVSGIDCLSDPVTFEFFEYFYDPTEACDGGWTCSGDITNGGDTTPAPAAAFGTDTPVAGRGGGAETTAPAAPTATTTSAGVDDIMASSATDGGVS 155
BLAST of mRNA_E-siliculosus-1a_M_contig89.16914.1 vs. uniprot
Match: D7FST2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST2_ECTSI) HSP 1 Score: 159 bits (403), Expect = 8.010e-39 Identity = 85/124 (68.55%), Postives = 95/124 (76.61%), Query Frame = 2
Query: 47 MARTPGTYPLLASLYLLVAATVVVLHADAQ-RDCT--GTSQACVASAFCTECTSATTDDSYVDCLAGIGAEIGSCEYTEQQACCLNEVSGIDCVSDPVTFEFFECLYDPTEACDGGWTCSGDTT 409
MARTPGT+P LASLYLLVAAT VVL+ADAQ +CT +QAC SA C +CT+ T S+ DCL+GI A IGSCE+TEQ ACCLNEVSGIDCVSD TFEFFEC+YD CD TCSGDTT
Sbjct: 1 MARTPGTHPRLASLYLLVAATAVVLYADAQLEECTEAAVTQACDESAICLQCTAVITGGSFSDCLSGIDATIGSCEFTEQAACCLNEVSGIDCVSDLATFEFFECVYDLAAPCDVSLTCSGDTT 124
BLAST of mRNA_E-siliculosus-1a_M_contig89.16914.1 vs. uniprot
Match: A0A6H5JRJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ7_9PHAE) HSP 1 Score: 139 bits (350), Expect = 2.160e-32 Identity = 71/118 (60.17%), Postives = 86/118 (72.88%), Query Frame = 2
Query: 47 MARTPGTYPLLASLYLLVAATVVVLHADAQRDCTGT-SQACVASAFCTECTSATTDDSYVDCLAGIGAEIGSCEYTEQQACCLNEVSGIDCVSDPVTFEFFECLYDPTEACDGGWTCS 397
MARTPGT P LASLY L+AA+ VVLHADAQ T +QAC +S C EC + TD S++DCL+GI A + SCE+TEQ ACCLNE+SG DC+SD T E+F+CLYD E CD TC+
Sbjct: 1 MARTPGTRPRLASLYFLIAASAVVLHADAQNCTEDTVTQACDSSDVCPECIAVLTDSSFLDCLSGINAALDSCEFTEQAACCLNEISGTDCLSDLPTLEYFDCLYDLAEPCDVTLTCT 118
BLAST of mRNA_E-siliculosus-1a_M_contig89.16914.1 vs. uniprot
Match: D7FST6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST6_ECTSI) HSP 1 Score: 107 bits (267), Expect = 4.340e-23 Identity = 61/147 (41.50%), Postives = 83/147 (56.46%), Query Frame = 2
Query: 47 MARTPGTYPLL----ASLYLLVAATVVVLHADAQ-RDCTGTSQACVASAFCTECTSATTDDSYVDCLAGIGAEIGSCEYTEQQACCLNEVSGIDCVSDPVTFEFFECLYDPTEAC-DGGWTCSGDTTDGXXXTPAPAAASGTDTPVA 469
M R+P P L A+L LL A VVL DAQ RDC+ AC S FC+ C ++T++ +Y C + + +++ C+Y E CC NE SG DCV DPVT+ + ECL+D T++C D WTCSG T P+ S + P A
Sbjct: 1 MGRSPAALPRLVLVVATLCLLSAPNTVVLRVDAQSRDCSDLLLACDESDFCSACLASTSEPAYAACESALPSDLFVCQYAEYNVCCYNEASGNDCVGDPVTYAYLECLWDTTDSCEDDDWTCSGSFTAAPTPAPSELTVSASVAPTA 147
BLAST of mRNA_E-siliculosus-1a_M_contig89.16914.1 vs. uniprot
Match: D7FST5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST5_ECTSI) HSP 1 Score: 109 bits (272), Expect = 8.730e-22 Identity = 280/426 (65.73%), Postives = 293/426 (68.78%), Query Frame = 2
Query: 47 MARTPGTYPLLA--SLYLLVAATVVVLHADAQ---RDCTGTSQACVASAFCTECTSATTDDSYVDCLAG--IGAEIGSCEYTEQQACCLNEVSGIDCVSDPVTFEFFECLYDPTEACDGGWTCSGD-------TTDGXXXTPAPAAASGTDTPVAGXXXXXXXXXXXXXXXXXXXXXGDETMAPSGTDDGMSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRALDITPSPSSAAAMPSATTTTTSMAGESETMAP-TAAGXXXXXXXXXXXXXTGEAGGGSAPTASGADETEAPTSAAXXXXXXXXXXXXXXXXXXXXXXXTSGGRGLLSSSVTTVGGVVAGLLAFSAAAVVV 1279
M RT G P L SLYLL AAT VV HADAQ RDC + AC S C +++ CL I SC+ E+ ACC NE SG+DC++DP TF ECLYD C+ WTCSG TT TPAP+ + T GXXXXXXXXXXXXXXXXXXXXX S TD GM+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRALDIT TA G XXXXXXXXXXX TGEAGGG AP ASGADETEAPTS XXXXXXXXXXXXXXXXXXXX TSGG LL SSVTTVGGVVA LLAF AAAVVV
Sbjct: 1 MTRTAGALPRLGVVSLYLLGAATTVVRHADAQYSGRDCNEFNLACFESETCAAXXXXXXSEAFFTCLDNLPIPTTDDSCDSNEEFACCFNEASGLDCINDPTTFALMECLYDDANQCEENWTCSGSSGGGDPSTTSASGSTPAPSLPATTSAXXGGXXXXXXXXXXXXXXXXXXXXX----XXXSATDGGMAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRALDITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGDXXXXXXXXXXXATGEAGGGPAPIASGADETEAPTSXXXXXXXXXXXXXXXXXXXXXXTDTTSGGCRLLLSSVTTVGGVVASLLAFLAAAVVV 422 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig89.16914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig89.16914.1 >prot_E-siliculosus-1a_M_contig89.16914.1 ID=prot_E-siliculosus-1a_M_contig89.16914.1|Name=mRNA_E-siliculosus-1a_M_contig89.16914.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=412bp MARTPGTYPLLASLYLLVAATVVVLHADAQRDCTGTSQACVASAFCTECTback to top mRNA from alignment at E-siliculosus-1a_M_contig89:658713..661504+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig89.16914.1 ID=mRNA_E-siliculosus-1a_M_contig89.16914.1|Name=mRNA_E-siliculosus-1a_M_contig89.16914.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2792bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:658713..661504+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig89:658713..661504+ >mRNA_E-siliculosus-1a_M_contig89.16914.1 ID=mRNA_E-siliculosus-1a_M_contig89.16914.1|Name=mRNA_E-siliculosus-1a_M_contig89.16914.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2472bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:658713..661504+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |