mRNA_E-siliculosus-1a_M_contig89.16906.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig89.16906.1
Unique NamemRNA_E-siliculosus-1a_M_contig89.16906.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig89.16906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig89contigE-siliculosus-1a_M_contig89:559789..561786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size543
Model size546
Exons2
Hectar predicted targeting categorymitochondrion
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936355.399245-CDS-E-siliculosus-1a_M_contig89:559790..5600331622936355.399245-CDS-E-siliculosus-1a_M_contig89:559790..560033Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 559791..560033 -
1696251040.318251-CDS-E-siliculosus-1a_M_contig89:559790..5600331696251040.318251-CDS-E-siliculosus-1a_M_contig89:559790..560033Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 559791..560033 -
1622936355.4176428-CDS-E-siliculosus-1a_M_contig89:561486..5617861622936355.4176428-CDS-E-siliculosus-1a_M_contig89:561486..561786Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 561487..561786 -
1696251040.3302531-CDS-E-siliculosus-1a_M_contig89:561486..5617861696251040.3302531-CDS-E-siliculosus-1a_M_contig89:561486..561786Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 561487..561786 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig89.16906.1prot_E-siliculosus-1a_M_contig89.16906.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig89 559791..561786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig89.16906.1

>prot_E-siliculosus-1a_M_contig89.16906.1 ID=prot_E-siliculosus-1a_M_contig89.16906.1|Name=mRNA_E-siliculosus-1a_M_contig89.16906.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=181bp
ASTVLHLSVPQTRRRQQQAGRHSFAAMNIFSPRRRAMTGNAGDAAPSSAR
PRSLSTTVVAAAAAAGTPRGARGGGFKRSSPRAPGASSSSVRKGEYDAFK
ESVLDTLGRTDLRAIDDGLRNLYSKVEADLTLGGLQGAFSDDEDDDSEDD
ESDADSADDDVSGDGSGGSGGGVGGSVSSEV
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mRNA from alignment at E-siliculosus-1a_M_contig89:559789..561786-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig89.16906.1 ID=mRNA_E-siliculosus-1a_M_contig89.16906.1|Name=mRNA_E-siliculosus-1a_M_contig89.16906.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1998bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:559789..561786- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCGTCGACAGTGCTGCATCTGTCAGTTCCTCAGACGAGGCGCCGACAACA
GCAGGCAGGCCGCCACAGCTTTGCCGCGATGAACATCTTCTCGCCCCGAA
GAAGAGCGATGACAGGCAACGCGGGAGACGCAGCGCCTTCTTCCGCTCGA
CCGAGAAGCCTGAGCACTACTGTTGTTGCTGCTGCTGCTGCTGCCGGAAC
GCCGAGGGGAGCAAGAGGGGGCGGGTTCAAACGCAGCAGTCCGAGAGCGC
CGGGGGCTTCTTCTTCCTCTGTGCGCAAGGGAGAGTACGATGCCTTCAAG
GTAGAGGGTACTGCTGGTGCATCATCCTTGCTATTGTGTGTATTGGTTGC
AGGATGTGAGAAATTCTGTCTCTTTGGATATGGGGAATAAAAAGCATCAA
CGTCCCGAGTCCAGCAGACTACAGCCCGGCAAGACGCCGGGTTTCCTCGT
AGACGTTCCGAGGATGTGCGTCCATGCAAATAGTATTCCAGAAGTTGGAA
CAGAATGCATCAACAACAGCAGCAGCTTTAGTGCGGCGGTGCCTGGAAGG
ACCTCGTTGATACTGCTGTATTGCGCATGTTGGTGAGCGCGAGCTGCGCA
GAAAGAAGTACTTGCGCAGAGGTTTGTTTCCACAACTATACGCGCACTTA
GTCCTTCGAAACAGCGTGCGGACAAACATAGAAGACCCGACAGTGTTGTG
CGCGGGTCTGTTACGACCTTGGCGCTCTGCAACCGAACAGCGCTGCTGCT
GGTAGGGACTTGGGAGTGCAAAGGCGGCTCGAGTGGCATGACATTTTTCA
TTTTTCAAACAACGACGCATATTGCCCCGCGTCTTCAAGTGCTCTGAGGC
GGGACTTTGGTTCCACCGGTGTAACCGCAGCATGTGCAGATGTACAGCGA
GTGGTAGGCCGGAAGAAGCCGGACTGCTGCAACAACCATGGGCATTGACA
TCACACATAGTTCCATGAGTTAATGCTCGATGTACGATACGGGAATTATC
GATGTACCTGTTCAAATGCTGCGTGCTTGTAACTGAGGAGCTACATACAC
ATTGGATGCATACGAGGCGGGTCTCACAGAAGAAGCAGGGTGCTTCCGCG
GTGTGTGTCATGATGTACATGTGCCATCGACCGACACCTCGAGACTAGAT
TTCTTTTACAGTCGTGGTCCCGGTTCAGCGGTTCCCTGTTTAGCGGGATG
CCCGAAATAGCGGTCCCAAAATCTCGTGGCACGGCTGCACCTCGGTGGTC
AAACTACAATATAACTGCCAATCCGGTTCAGCGGCGATGCCCTCAGTAGC
GGTATCCCGGGACCACGACTGTATTTTGAAACTCCCAATGTAGCCTGGTG
TAGGCTATGTACGTCCCTGGCAGAATGTTTGTCTCTACAGTACCGCTCTA
AATTGCTCTTTCCGGCCGGCAGTTCAAGACATCGCCGGCTGAACACCCGA
AGGTTCGGTCCCTTCGAAGGGTTAGTTCTAGATGCGCGCTTGCTCCCTCG
CCGATACTTCTCCGAGAACTTGTGCCATTGCTTGACGAAGCTAGCACACA
TACCACCCACACACACCCCGGCACCCCTCGCTTGCTCCCCTTTGATGCCC
GCCTTTGGTAATAATCCACCACGTCGACCCCCCCCGACAAAGTCACCCAC
GTGCCAGCGTCACCTTCCCAGCTTCTTGTCTGCAGGAATCGACCGCCCAC
TCCCCCGCCCTGCCCCCCCGCTCCACCGTCACCCCCCTCCCCTCCCGCTG
CAGGAATCAGTGCTGGACACCCTGGGGCGGACAGACCTGCGCGCGATCGA
CGACGGGCTCCGAAACCTGTACTCGAAGGTCGAGGCGGATCTTACCCTGG
GAGGCTTGCAGGGCGCCTTCAGCGACGACGAGGACGACGATTCCGAGGAT
GACGAATCGGACGCTGATTCTGCCGACGATGACGTCTCGGGGGATGGCAG
CGGCGGCAGCGGCGGCGGTGTCGGCGGTTCCGTGTCTTCCGAAGTTTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig89:559789..561786-

>mRNA_E-siliculosus-1a_M_contig89.16906.1 ID=mRNA_E-siliculosus-1a_M_contig89.16906.1|Name=mRNA_E-siliculosus-1a_M_contig89.16906.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1086bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:559789..561786- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCGTCGACAGTGCTGCATCTGTCAGTTCCTCAGACGAGGCGCCGACAACA
GCAGGCAGGCCGCCACAGCTTTGCCGCGATGAACATCTTCTCGCCCCGAA
GAAGAGCGATGACAGGCAACGCGGGAGACGCAGCGCCTTCTTCCGCTCGA
CCGAGAAGCCTGAGCACTACTGTTGTTGCTGCTGCTGCTGCTGCCGGAAC
GCCGAGGGGAGCAAGAGGGGGCGGGTTCAAACGCAGCAGTCCGAGAGCGC
CGGGGGCTTCTTCTTCCTCTGTGCGCAAGGGAGAGTACGATGCCTTCAAG
GCGTCGACAGTGCTGCATCTGTCAGTTCCTCAGACGAGGCGCCGACAACA
GCAGGCAGGCCGCCACAGCTTTGCCGCGATGAACATCTTCTCGCCCCGAA
GAAGAGCGATGACAGGCAACGCGGGAGACGCAGCGCCTTCTTCCGCTCGA
CCGAGAAGCCTGAGCACTACTGTTGTTGCTGCTGCTGCTGCTGCCGGAAC
GCCGAGGGGAGCAAGAGGGGGCGGGTTCAAACGCAGCAGTCCGAGAGCGC
CGGGGGCTTCTTCTTCCTCTGTGCGCAAGGGAGAGTACGATGCCTTCAAG
GAATCAGTGCTGGACACCCTGGGGCGGACAGACCTGCGCGCGATCGACGA
CGGGCTCCGAAACCTGTACTCGAAGGTCGAGGCGGATCTTACCCTGGGAG
GCTTGCAGGGCGCCTTCAGCGACGACGAGGACGACGATTCCGAGGATGAC
GAATCGGACGCTGATTCTGCCGACGATGACGTCTCGGGGGATGGCAGCGG
CGGCAGCGGCGGCGGTGTCGGCGGTTCCGTGTCTTCCGAAGTTGAATCAG
TGCTGGACACCCTGGGGCGGACAGACCTGCGCGCGATCGACGACGGGCTC
CGAAACCTGTACTCGAAGGTCGAGGCGGATCTTACCCTGGGAGGCTTGCA
GGGCGCCTTCAGCGACGACGAGGACGACGATTCCGAGGATGACGAATCGG
ACGCTGATTCTGCCGACGATGACGTCTCGGGGGATGGCAGCGGCGGCAGC
GGCGGCGGTGTCGGCGGTTCCGTGTCTTCCGAAGTT
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