mRNA_E-siliculosus-1a_M_contig89.16905.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig89.16905.1
Unique NamemRNA_E-siliculosus-1a_M_contig89.16905.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig89.16905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig89contigE-siliculosus-1a_M_contig89:559461..559829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size369
Model size371
Exons1
Hectar predicted targeting categorymitochondrion
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936355.7127178-CDS-E-siliculosus-1a_M_contig89:559460..5598291622936355.7127178-CDS-E-siliculosus-1a_M_contig89:559460..559829Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 559461..559829 +
1696251040.415422-CDS-E-siliculosus-1a_M_contig89:559460..5598291696251040.415422-CDS-E-siliculosus-1a_M_contig89:559460..559829Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 559461..559829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig89.16905.1prot_E-siliculosus-1a_M_contig89.16905.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig89 559461..559829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig89.16905.1

>prot_E-siliculosus-1a_M_contig89.16905.1 ID=prot_E-siliculosus-1a_M_contig89.16905.1|Name=mRNA_E-siliculosus-1a_M_contig89.16905.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=123bp
LVPRPPRPAAASVSASRGKLVVFGRRRRLVVRGGGGGSAADHGGGDERGG
GRGLLLLLLRHGPPRRGRLSRVFQPANAVTASSWKPFPPSSPPFPPGAPA
PAGAAAAFPGNFGRHGTADTAAA
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mRNA from alignment at E-siliculosus-1a_M_contig89:559461..559829+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig89.16905.1 ID=mRNA_E-siliculosus-1a_M_contig89.16905.1|Name=mRNA_E-siliculosus-1a_M_contig89.16905.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=369bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:559461..559829+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTTGTGCCTCGACCCCCCCGTCCCGCCGCTGCCTCCGTTTCCGCGTCTCG
AGGAAAGCTTGTCGTTTTTGGTCGACGAAGGAGGCTTGTTGTGAGGGGTG
GGGGCGGAGGTAGTGCGGCGGATCATGGCGGCGGCGACGAGAGAGGAGGT
GGACGGGGCTTGCTGCTGCTGCTGCTGCGCCACGGCCCTCCTCGCCGCGG
TCGTCTTTCCCGTGTTTTTCAGCCTGCTAACGCTGTTACCGCCAGCTCCT
GGAAACCCTTTCCACCTTCCTCCCCCCCTTTTCCTCCCGGGGCCCCCGCC
CCCGCCGGCGCCGCCGCCGCCTTCCCCGGAAACTTCGGAAGACACGGAAC
CGCCGACACCGCCGCCGCT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig89:559461..559829+

>mRNA_E-siliculosus-1a_M_contig89.16905.1 ID=mRNA_E-siliculosus-1a_M_contig89.16905.1|Name=mRNA_E-siliculosus-1a_M_contig89.16905.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=738bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:559461..559829+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTTGTGCCTCGACCCCCCCGTCCCGCCGCTGCCTCCGTTTCCGCGTCTCG
AGGAAAGCTTGTCGTTTTTGGTCGACGAAGGAGGCTTGTTGTGAGGGGTG
GGGGCGGAGGTAGTGCGGCGGATCATGGCGGCGGCGACGAGAGAGGAGGT
GGACGGGGCTTGCTGCTGCTGCTGCTGCGCCACGGCCCTCCTCGCCGCGG
TCGTCTTTCCCGTGTTTTTCAGCCTGCTAACGCTGTTACCGCCAGCTCCT
GGAAACCCTTTCCACCTTCCTCCCCCCCTTTTCCTCCCGGGGCCCCCGCC
CCCGCCGGCGCCGCCGCCGCCTTCCCCGGAAACTTCGGAAGACACGGAAC
CGCCGACACCGCCGCCGCTCTTGTGCCTCGACCCCCCCGTCCCGCCGCTG
CCTCCGTTTCCGCGTCTCGAGGAAAGCTTGTCGTTTTTGGTCGACGAAGG
AGGCTTGTTGTGAGGGGTGGGGGCGGAGGTAGTGCGGCGGATCATGGCGG
CGGCGACGAGAGAGGAGGTGGACGGGGCTTGCTGCTGCTGCTGCTGCGCC
ACGGCCCTCCTCGCCGCGGTCGTCTTTCCCGTGTTTTTCAGCCTGCTAAC
GCTGTTACCGCCAGCTCCTGGAAACCCTTTCCACCTTCCTCCCCCCCTTT
TCCTCCCGGGGCCCCCGCCCCCGCCGGCGCCGCCGCCGCCTTCCCCGGAA
ACTTCGGAAGACACGGAACCGCCGACACCGCCGCCGCT
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