mRNA_E-siliculosus-1a_M_contig89.16897.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig89.16897.1
Unique NamemRNA_E-siliculosus-1a_M_contig89.16897.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig89.16897.1 vs. uniprot
Match: D8LSI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI3_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 7.890e-80
Identity = 119/130 (91.54%), Postives = 123/130 (94.62%), Query Frame = 1 
Query:    1 SGRDNYQLVAVGARGDLPDDVRAMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGHDYEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSMVADDDLCLNLQTAYDLTTEEYDEVSDRGR 390
            +GRDNYQLVAVGARGDLPDDV AMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGH YEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSMVA+DDLC+NLQTAYDLT EEYDE+    R
Sbjct:   21 TGRDNYQLVAVGARGDLPDDVSAMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGHGYEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSMVANDDLCVNLQTAYDLTREEYDEMELEAR 150
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BLAST of mRNA_E-siliculosus-1a_M_contig89.16897.1 vs. uniprot
Match: A0A6H5KJA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA8_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 1.380e-79
Identity = 120/130 (92.31%), Postives = 124/130 (95.38%), Query Frame = 1 
Query:    1 SGRDNYQLVAVGARGDLPDDVRAMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGHDYEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSMVADDDLCLNLQTAYDLTTEEYDEVSDRGR 390
            +GRDNYQLVAVGARGDLPDDVR MQCVEQRTTEWRHLEYPEFYANISA HFVVTAAAGHDYEYDKATSTVPTALLLERPLV+SSTLLDAYPCLRKSRVHSMVA+DDLCLNLQTAYDLTTEEYDE+    R
Sbjct:  112 TGRDNYQLVAVGARGDLPDDVRRMQCVEQRTTEWRHLEYPEFYANISAAHFVVTAAAGHDYEYDKATSTVPTALLLERPLVISSTLLDAYPCLRKSRVHSMVANDDLCLNLQTAYDLTTEEYDEMELEAR 241
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BLAST of mRNA_E-siliculosus-1a_M_contig89.16897.1 vs. uniprot
Match: A0A482SI13_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SI13_9ARCH)

HSP 1 Score: 68.9 bits (167), Expect = 4.270e-11
Identity = 37/102 (36.27%), Postives = 60/102 (58.82%), Query Frame = 1 
Query:   61 VRAMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAA-AGHDYEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSMVADDDLCLNLQTAYDLTTEE 363
            ++  + + Q  T  R + +P FY  I+   F+VT A   ++Y   +A+S++PTA++ E PLV+++ LL+ Y CL    +H  VAD D C  L+ A  LT +E
Sbjct:    1 MKITEDMRQWLTVLRAVAHPYFYGAIARADFLVTFANPAYEYNITRASSSIPTAVMTEVPLVLTTDLLNKYDCLYGGSIHRRVADTDDCKALKNAIQLTDQE 102
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BLAST of mRNA_E-siliculosus-1a_M_contig89.16897.1 vs. uniprot
Match: A0A482SHX3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHX3_9ARCH)

HSP 1 Score: 58.2 bits (139), Expect = 2.410e-6
Identity = 31/123 (25.20%), Postives = 61/123 (49.59%), Query Frame = 1 
Query:    7 RDNYQLVAVGARGDLPDDVRAMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGHDYEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSMVADDDLCLNLQTAYDLTTEEYDEV 375
            R + +LV +G    L  ++     +   TT  +  +Y  F+ N+S+  + +  +    YE+ + TS++PT+L+   P+++ + LL  Y CLR   VH   +  D C +++    L  E   ++
Sbjct:  241 RHDIELVLIGKVATLGANLTIPLKLSNITTVVKWPDYLGFFRNVSSADYAILFSKFDFYEHGRITSSIPTSLVSNLPIILPNKLLSDYACLRNQYVHRATSMADDCSSVKAVLSLRHERQQQM 363
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig89.16897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSI3_ECTSI7.890e-8091.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJA8_9PHAE1.380e-7992.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482SI13_9ARCH4.270e-1136.27Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A482SHX3_9ARCH2.410e-625.20Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig89contigE-siliculosus-1a_M_contig89:496767..498661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size402
Model size677
Exons4
Ec32 orthologEc-09_001750.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig89.16897.1prot_E-siliculosus-1a_M_contig89.16897.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig89 496973..498592 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936365.7910233-UTR-E-siliculosus-1a_M_contig89:496766..4969721622936365.7910233-UTR-E-siliculosus-1a_M_contig89:496766..496972Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig89 496767..496972 -
1696251045.3043654-UTR-E-siliculosus-1a_M_contig89:496766..4969721696251045.3043654-UTR-E-siliculosus-1a_M_contig89:496766..496972Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig89 496767..496972 -
1622936365.889326-UTR-E-siliculosus-1a_M_contig89:498592..4986611622936365.889326-UTR-E-siliculosus-1a_M_contig89:498592..498661Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig89 498593..498661 -
1696251045.358168-UTR-E-siliculosus-1a_M_contig89:498592..4986611696251045.358168-UTR-E-siliculosus-1a_M_contig89:498592..498661Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig89 498593..498661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936365.8104045-CDS-E-siliculosus-1a_M_contig89:496972..4971401622936365.8104045-CDS-E-siliculosus-1a_M_contig89:496972..497140Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 496973..497140 -
1696251045.313466-CDS-E-siliculosus-1a_M_contig89:496972..4971401696251045.313466-CDS-E-siliculosus-1a_M_contig89:496972..497140Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 496973..497140 -
1622936365.8287177-CDS-E-siliculosus-1a_M_contig89:497464..4975601622936365.8287177-CDS-E-siliculosus-1a_M_contig89:497464..497560Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 497465..497560 -
1696251045.3234525-CDS-E-siliculosus-1a_M_contig89:497464..4975601696251045.3234525-CDS-E-siliculosus-1a_M_contig89:497464..497560Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 497465..497560 -
1622936365.8463385-CDS-E-siliculosus-1a_M_contig89:498017..4981111622936365.8463385-CDS-E-siliculosus-1a_M_contig89:498017..498111Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 498018..498111 -
1696251045.3336108-CDS-E-siliculosus-1a_M_contig89:498017..4981111696251045.3336108-CDS-E-siliculosus-1a_M_contig89:498017..498111Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 498018..498111 -
1622936365.8692782-CDS-E-siliculosus-1a_M_contig89:498548..4985921622936365.8692782-CDS-E-siliculosus-1a_M_contig89:498548..498592Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 498549..498592 -
1696251045.3440912-CDS-E-siliculosus-1a_M_contig89:498548..4985921696251045.3440912-CDS-E-siliculosus-1a_M_contig89:498548..498592Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 498549..498592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig89.16897.1

>prot_E-siliculosus-1a_M_contig89.16897.1 ID=prot_E-siliculosus-1a_M_contig89.16897.1|Name=mRNA_E-siliculosus-1a_M_contig89.16897.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=134bp
MQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGHDYEYDKATSTVPTA
LLLERPLVMSSTLLDAYPCLRKSRVHSMVADDDLCLNLQTAYDLTTEEYD
EVSDRGRLVYGGGGGRSSGGGDSGDVVGGRAGG*
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mRNA from alignment at E-siliculosus-1a_M_contig89:496767..498661-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig89.16897.1 ID=mRNA_E-siliculosus-1a_M_contig89.16897.1|Name=mRNA_E-siliculosus-1a_M_contig89.16897.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1895bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:496767..498661- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCAGGCAGGGACAACTACCAGCTGGTCGCCGTGGGCGCGCGAGGCGACTT
GCCCGACGACGTCAGGGCCATGCAGTGCGTGGAACAGCGGACGACGGAAT
GGCGACACCTCGAGTAAGACTCCACACACGTTGCTCACGTTTCCCGCATG
CGTATGGGAAGCAGTAGCCTACTCAGGTTTTGATGAAGCAAACTTGTTGT
AGAAAGTAGGCAATCGGTAGGATATCGGGGGTTAGGGTTGGGGTCTACGT
AACCCCCTGCCTCTCTATTTTCATAGATAAGCTTAATTTTTGCACGCGGG
CAGTCCCTTTTGACCATCGAAGATGTTAAACCGGCACTGAACGATCGGGA
GAGACAGACGTGCGTTCCTTTACAAATGGGAATCGGTGTGCAGGTGTCAT
GATCGTTACTTGGGTCTCCTTGGAACCACTTTAGAAAACAAGATCCTCAT
GATTTAGTTTCTCCGGGTACACAGAGAGAGAAATCGAACATGGTCTTGCT
GAGGGACCCGACTTCCAAGAAAGATCCTATTTTTTTGGAAAAACCAACAG
GTACCCGGAGTTTTACGCCAACATCAGCGCGGGACATTTCGTGGTGACGG
CGGCTGCGGGGCACGATTACGAGTACGACAAGGCCACATCCACGGTATGC
CTGACGCTCACTCTATGGCTGCTCCTTGTTCTTTCTCATGGTTTTCTCTT
TTGTTGTTGGTCCTAGTGCTTGGCCACCAATAAAGGTCACGCTCCTCGCC
GCCACCACGAGGAGAGTCATTTTTGATTTTGGGTTTCATCTTGTGCGCTT
CTTTCTTCCAAATAAGTATGCTGTCACACCATGACAAACCCACGCACGTT
ACGTTCTCTCGGTGTTCAGGCACGTCGCCGAAGGCATGTTGTTAGTGCTT
TCGTGTCTCTCGCTTACCCGGCACGCTACGAAAGGCTCCCTGTCACGCAG
GGGTACAGTCGAAAATCATCCAGCGCCAATAAACCCTTTCAGAGGACAAT
TTAGGCAGCGTTTTTCCTTTCTCCCTTCAAGGTACAAGGCGATGCGTGAC
GGTTTCGTCTGCTGCTGCTGCTGCTGCTGTTGTTATCTCCGCGATCTGCA
GGTGCCCACGGCTCTGTTGCTCGAGAGACCGTTGGTGATGTCTTCGACGC
TGCTCGACGCCTACCCGTGCCTCAGGAAATCTCGTGTCCACAGCATGGTG
AGTATTTTTTTTGTCTCTAGTGTTTGTTTTGTACCCGCTGGTCACAAAAC
CTGAGACTATTTCCACACAAGCAGCTCATGGCTGGGGAAACCCGGGGTCC
CAAACAGCCGGTGCAAGATCGCCGTCGTTCGTCATCAACAGGCAGTCCTG
TCTGAGTCGAGCGCCGTTCCTATGCTAATCAGTATCCGACAGTTTCGTAT
CCTGGACTCCGAACCGACTTCTACACGTCACGCGGCTTTTCTGTCCCGTG
GGTCCCCCCCCCCCCCTGCTGCTGCTGTGTGCGTGTGTGAACATTTTTTT
CGCTGTGGTTTGTTTGTGCAGGTGGCTGATGACGACCTCTGCCTCAACCT
CCAGACCGCCTACGACTTGACGACGGAGGAGTACGACGAGGTGAGTGATC
GGGGGCGATTGGTGTATGGTGGAGGTGGTGGTAGGAGTAGCGGTGGTGGT
GATAGTGGTGATGTTGTTGGAGGTAGAGCTGGTGGGTAGTGGCGATGGCG
GTTGTCGTGCTGCTGCTGCTGCTGCTTGTGATGTGGGTCAGCCGGGTTGT
TACGTTCAAGCGCCAGCGTATTTTTTGGAAGCCGACATCTACTAGCGTAG
TCGACGGCCGGGGTGGTACTTCGCCGGTTTCGCAATGGCAAACAAGATCG
TCATTCTGTAGGCACAGCCTAGCTCGTACGTTTCCAGAGATAGAT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig89:496767..498661-

>mRNA_E-siliculosus-1a_M_contig89.16897.1 ID=mRNA_E-siliculosus-1a_M_contig89.16897.1|Name=mRNA_E-siliculosus-1a_M_contig89.16897.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=804bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:496767..498661- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCAGTGCGTGGAACAGCGGACGACGGAATGGCGACACCTCGAATGCAG
TGCGTGGAACAGCGGACGACGGAATGGCGACACCTCGAGTACCCGGAGTT
TTACGCCAACATCAGCGCGGGACATTTCGTGGTGACGGCGGCTGCGGGGC
ACGATTACGAGTACGACAAGGCCACATCCACGGTACCCGGAGTTTTACGC
CAACATCAGCGCGGGACATTTCGTGGTGACGGCGGCTGCGGGGCACGATT
ACGAGTACGACAAGGCCACATCCACGGTGCCCACGGCTCTGTTGCTCGAG
AGACCGTTGGTGATGTCTTCGACGCTGCTCGACGCCTACCCGTGCCTCAG
GAAATCTCGTGTCCACAGCATGGTGCCCACGGCTCTGTTGCTCGAGAGAC
CGTTGGTGATGTCTTCGACGCTGCTCGACGCCTACCCGTGCCTCAGGAAA
TCTCGTGTCCACAGCATGGTGGCTGATGACGACCTCTGCCTCAACCTCCA
GACCGCCTACGACTTGACGACGGAGGAGTACGACGAGGTGAGTGATCGGG
GGCGATTGGTGTATGGTGGAGGTGGTGGTAGGAGTAGCGGTGGTGGTGAT
AGTGGTGATGTTGTTGGAGGTAGAGCTGGTGGGTAGGTGGCTGATGACGA
CCTCTGCCTCAACCTCCAGACCGCCTACGACTTGACGACGGAGGAGTACG
ACGAGGTGAGTGATCGGGGGCGATTGGTGTATGGTGGAGGTGGTGGTAGG
AGTAGCGGTGGTGGTGATAGTGGTGATGTTGTTGGAGGTAGAGCTGGTGG
GTAG
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