mRNA_E-siliculosus-1a_M_contig89.16884.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig89.16884.1 vs. uniprot
Match: D8LSJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSJ6_ECTSI) HSP 1 Score: 1252 bits (3239), Expect = 0.000e+0 Identity = 1024/1098 (93.26%), Postives = 1040/1098 (94.72%), Query Frame = 3
Query: 681 MALSSSNTRSSMMPVEGPGGARPSEISVDPFPNTANANASGGGGVPGPSVPGATAAVVRGEIANGVDMFLECMSRRRLKLAAATAAASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAMVACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLEAGITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGILLDELNKRRPSXXXXXXXXXRNGDTNAAEFAREVGHVDSDARSSSGRGTGIGDVARKEAAGREPATAMAGTVSADPAGSENVTEAFFSVRAGTRPGPAGIETIVGSNPMAPPMATAEAITRGGATVGGEGGNGETATTRGGGAWRMNRKLESDLLQLFGQADQVDAAFKVLEGMVERRDSPDSETWLLLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKAISEENTLRTRALQRTRMLETRRSPPSPSAARRPAEDAAVAXXXTAPGAPAQTSPLXXXXXXXXXXXXXTVPRDGEDDRGKSLDVLADAVGTTNVVAGGEKGPAAAATRAHAKEEPSVITAWGSSSPGRGTAGSATKAGGMGGYASSGRSEASLRGPTADPTNSSRAPSSTSSDNANPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLIKAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALEIWRQQLSAGVAPGPRSTRAALAACGGAGDVDTALQVYDVMREAGIRPNSRALLDLVNLCRANGLQSVAARIMRERSKTAATTSRRRSNVSMRRNSAGSTS 3974
MALSSSNT+SSMMPVEGP GARPSEISVDPFPNTANANASGGGGVPGPSVPGATAAVVRG+IANGV+MFLECMSRRRLKLAAATAAASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAM+ACQLRPTIVTFSTLISRAGACRRVRLAERFFREM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX I+LDELNKRRP+ XXXXXXXXRNGDTNAAEF REVGHVDSD RSSSGRGTGIGDVARKEAAGR PATAMAGTVSADPA SENVTEAFFS G PGPAGI+TI G NP+ PPMATAEAITRGGAT G EGG+GETAT RG GAWRMNRKLESDLLQLFGQADQVDAAFKVLEGMVERRDSPD ETWLLLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKAISEENTLRTRALQRTRMLETRRSPPS SA RRPAE ++VA +APGAPAQ+SPL T+PRDG DDRGKSLDV ADAVGTT VVAGG KGPAAAATRAHAKEEPSVI AW SSS GRGTAG ATKAGG+GGYASSGRSEASLRGPTADPT SSRAPSSTSSDNANPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLIKAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALEIWRQQLSAGVAPGPRSTRAALAACGGAGDVDTALQVYDVMRE GIRPNSRALLDLVNLCRANGLQSVAARIMRERSKT ATT+RRRSNVSMRRNSAGSTS
Sbjct: 1 MALSSSNTKSSMMPVEGPAGARPSEISVDPFPNTANANASGGGGVPGPSVPGATAAVVRGDIANGVEMFLECMSRRRLKLAAATAAASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLDELNKRRPNSXXXXXXXXRNGDTNAAEFVREVGHVDSDTRSSSGRGTGIGDVARKEAAGRGPATAMAGTVSADPADSENVTEAFFSGTVGITPGPAGIDTIAGPNPLPPPMATAEAITRGGATTG-EGGSGETATARGRGAWRMNRKLESDLLQLFGQADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKAISEENTLRTRALQRTRMLETRRSPPSSSAVRRPAEGSSVAAAASAPGAPAQSSPLPSTAPGTTSGGASTLPRDGVDDRGKSLDVRADAVGTTKVVAGGGKGPAAAATRAHAKEEPSVIAAWSSSSSGRGTAGPATKAGGVGGYASSGRSEASLRGPTADPTESSRAPSSTSSDNANPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLIKAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALEIWRQQLSAGVAPGPRSTRAALAACGGAGDVDTALQVYDVMREGGIRPNSRALLDLVNLCRANGLQSVAARIMRERSKTDATTNRRRSNVSMRRNSAGSTS 1097
BLAST of mRNA_E-siliculosus-1a_M_contig89.16884.1 vs. uniprot
Match: A0A836CEM1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM1_9STRA) HSP 1 Score: 200 bits (509), Expect = 6.310e-49 Identity = 108/206 (52.43%), Postives = 144/206 (69.90%), Query Frame = 3
Query: 3285 ANPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLIKAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALEIWRQQLSAGVAPGPRSTRAALAACGGAGDVDTALQVYDVMREAGIRPNSRALLDLVNLCRANGLQSVAARIMRERS 3902
++PA DNLFRVFLVF EM+S+GV+PD AYNAL+N+CA +G+ +RA+ V+R M +D L PDA+T+TSLIK AA A + AEEIFA MQQRTNHFSTF RP+E T+ H++ A++ + + R E+W Q L+ G+AP R+ L AC GD+ AL VY VM AGIRP++R+LL LV LC + G+ A I+R+RS
Sbjct: 653 SDPAADNLFRVFLVFGEMKSQGVQPDRPAYNALINSCAAVGDLERAMAVLRQMYEDEHC--LPPDAITFTSLIKTAAAA--HNADAAEEIFAAMQQRTNHFSTFHRPSERTFRHMITANMNIKRFSRVQELWAQMLAEGLAPSSRTCSLVLGACRHQGDLTQALSVYGVMNTAGIRPDNRSLLSLVRLCESAGMADKARDIIRDRS 854
BLAST of mRNA_E-siliculosus-1a_M_contig89.16884.1 vs. uniprot
Match: A0A7S0XEC2_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEC2_9STRA) HSP 1 Score: 100 bits (249), Expect = 1.730e-18 Identity = 53/114 (46.49%), Postives = 77/114 (67.54%), Query Frame = 3
Query: 3300 DNLFRVFLVFQEMR-SRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLIKAAA-RAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMR 3635
D+LFR++LVFQEM+ + ++ D YN L+N CA +G+ DRAL + M ++G ++P+ +TYTSLIKA A + +E AE IF MQQR+NHFS + +P E+TY LM+
Sbjct: 173 DDLFRLYLVFQEMKYNPAIQLDTAVYNTLINACAGVGDIDRALETMTAMQENG----IEPNVITYTSLIKACAFNSRNEMIELAENIFNEMQQRSNHFSNYIQPNEMTYEKLMQ 282
BLAST of mRNA_E-siliculosus-1a_M_contig89.16884.1 vs. uniprot
Match: A0A0G4F8K7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F8K7_VITBC) HSP 1 Score: 99.8 bits (247), Expect = 2.960e-17 Identity = 174/550 (31.64%), Postives = 246/550 (44.73%), Query Frame = 3
Query: 2301 MNRKLESDLLQLFGQADQVDAAFKVLEGMVERRDSPDSETWLLLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKAISEENTLRT-RALQRTRMLETR--------------RSPPSPSAARRPAEDAAVAXXXTAPGAPAQTSPLXXXXXXXXXXXXXTVPRDGEDDRGKSLDVLADAVGTTNVVAGGEKGPAAAATRAHAKEEPSVITAWGSSSPGRGTAGSATKAGGMGGYASSGRSEASLRGPTADPTNSSRAPSSTSSDNANPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLIKAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALEIW-RQQLSAGVAPGPRSTRAALAACGGAGDVDTALQVYDVMREAGIRPNSRALLDLVNLCRANGLQSVAARIMRERS 3902
+ L L+Q+F QA ++ AF + E M+++R +PD T L +A+ R H I+ +TYSA+LGAC RA+ + +AF + + M GV P E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + +S+E R R L R R + R PPSPS A+ P +AA++ G + SP PRD D R K + P+ R A+ P+ S+ P + G S LR + + S + + +NLFR+FLVFQEM+S GV+PDL AYN L++ C GE ++A+ V A MQQRTNHF++ P+E+T+ LM A+ A R E++ Q G+ P R+ A+ V+ AL +Y + +R ++R+L L++L GL +A+RI ++RS
Sbjct: 365 IQSNLTRPLMQMFSQARLLNRAFDMFERMIQQRQAPDQATLQTLFDAIXXXXXXXXXXXXXXXMRESTH---ISRVTYSAVLGACRRARTIVKAFLLFKDMMAAGVTPGESEYLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTVSDEFRRRAARKLNRHRQIADTPITEPSQTPDTSLDRLPPSPSPAQFP-WNAAMSSVDLRQGK--KLSP----------------PRDVLDRRKKRAE------------------PSPPERRVEAEALPA------SAPP----------------SVALGLSRPRLRHLDS---------MAYSLEEQHYYRENLFRIFLVFQEMQSSGVQPDLCAYNTLLDACGRAGEVEKAMEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTA------MQQRTNHFASCVLPSELTFKQLMLANRNAYRLRRVFELFDMMQRQHGIRPTLRTGAIAIQLACEVKQVERALDIYRTLTANRVRLDNRSLHALLSLLNEKGLHDMASRIRQQRS 837
BLAST of mRNA_E-siliculosus-1a_M_contig89.16884.1 vs. uniprot
Match: A0A7S2D4Z0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2D4Z0_9EUKA) HSP 1 Score: 71.6 bits (174), Expect = 3.470e-11 Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 3
Query: 969 CNVFLRALGDAGRIDDCVAAYEAMVACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLEAGI 1160
CN LR LGD G ++ V +EAMVA +RPT VT+ TLISRAGA R+ +LA R +R+ML G+
Sbjct: 2 CNKLLRVLGDGGHLEAMVGVFEAMVASGVRPTQVTYGTLISRAGAHRQPKLASRMYRDMLRRGL 65
BLAST of mRNA_E-siliculosus-1a_M_contig89.16884.1 vs. uniprot
Match: A0A7S2E620_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E620_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 1.410e-6 Identity = 34/92 (36.96%), Postives = 53/92 (57.61%), Query Frame = 3
Query: 3282 NANPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLIKAAARAVPPRVEEAEEIF 3557
N N A L +VFLVFQEMR G +PD YN L+ CA G+F RA V+ ++D + L+P V++ +++AA+R+ E+++
Sbjct: 749 NINDAKTLLVKVFLVFQEMRDAGAKPDTACYNVLLGACARAGDFTRARDVLNKLMDSDD---LEPTHVSWREMLRAASRSKTASSHLVEQVW 837
BLAST of mRNA_E-siliculosus-1a_M_contig89.16884.1 vs. uniprot
Match: A0A482S411_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S411_9ARCH) HSP 1 Score: 57.0 bits (136), Expect = 8.790e-5 Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 3
Query: 969 CNVFLRALGDAGRIDDCVAAYEAMV--ACQLRPTIVTFSTLISRAGACRRVRLAERFFREM 1145
CNV LR LGD G + C ++ M+ + +L P++VT+STLISRAG +RV LA FF M
Sbjct: 138 CNVLLRVLGDQGALSFCTQIFQLMLTHSPRLSPSLVTYSTLISRAGTWQRVDLARYFFDHM 198 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig89.16884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig89.16884.1 >prot_E-siliculosus-1a_M_contig89.16884.1 ID=prot_E-siliculosus-1a_M_contig89.16884.1|Name=mRNA_E-siliculosus-1a_M_contig89.16884.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1275bp MTRLGPFPHDSQHCASSLDRSCGMTPGWVQSAGLTQNLIPIRGQQQHRRRback to top mRNA from alignment at E-siliculosus-1a_M_contig89:276454..291772+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig89.16884.1 ID=mRNA_E-siliculosus-1a_M_contig89.16884.1|Name=mRNA_E-siliculosus-1a_M_contig89.16884.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=15319bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:276454..291772+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig89:276454..291772+ >mRNA_E-siliculosus-1a_M_contig89.16884.1 ID=mRNA_E-siliculosus-1a_M_contig89.16884.1|Name=mRNA_E-siliculosus-1a_M_contig89.16884.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=7650bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:276454..291772+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |