mRNA_E-siliculosus-1a_M_contig89.16871.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig89.16871.1
Unique NamemRNA_E-siliculosus-1a_M_contig89.16871.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig89.16871.1 vs. uniprot
Match: A0A6H5KA57_9PHAE (Putative_PNPOx domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KA57_9PHAE)

HSP 1 Score: 444 bits (1141), Expect = 2.160e-149
Identity = 239/268 (89.18%), Postives = 249/268 (92.91%), Query Frame = 1 
Query:  193 MVGGQFRPREAGGPAAATGGPGAGVIAAAVSAGVVVGVGGLMAVLWWRERGSKVAGTAAA-ADSCAAWRVESGDGPSRPPTEGLAGVVAAGQRLPAGSWHQADMTPPLPDDVVRLLQASRLCFLSTFSNDHPHLSLMNFTYHHADEVIILSTRRDTKKFQLVQTGRNVALLVHEFPDAGGSSGGXXXXXXXXXXGSKVTITLNGTATIQEGEQAERYRDLHVRKNPNSKTFIVGPNIAIITVRVRSARICNVRDEVTVWNVADSQPSA 993
            MVGGQFRPREAGGPAAATG PGAGVIAAAV+AGVVVGVGGLMAVLWWRER SK  GTAAA ADS AAWRVE+GDG SRP T+G  GVVAAG+RLPAGSWH+ADMTPPLPDDVVRLLQASRLCFLSTFS+DHPHLSLMNFTYHHADEVIILSTRRDTKK+QLV+TGRNVALLVHEFPDAGGS   XXXXX      SKVTITLNGTATIQEGEQAE+YRDLHVRKNP+SKTFIVGPNIAIITVRVRSARICNVRDEVTVWNVADSQPSA
Sbjct:    1 MVGGQFRPREAGGPAAATGAPGAGVIAAAVAAGVVVGVGGLMAVLWWRERVSKAPGTAAAVADSSAAWRVETGDGLSRPQTDGPGGVVAAGKRLPAGSWHEADMTPPLPDDVVRLLQASRLCFLSTFSDDHPHLSLMNFTYHHADEVIILSTRRDTKKYQLVRTGRNVALLVHEFPDAGGSXXXXXXXXSC----SKVTITLNGTATIQEGEQAEQYRDLHVRKNPDSKTFIVGPNIAIITVRVRSARICNVRDEVTVWNVADSQPSA 264
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BLAST of mRNA_E-siliculosus-1a_M_contig89.16871.1 vs. uniprot
Match: A0A835ZAR3_9STRA (Putative_PNPOx domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAR3_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.360e-48
Identity = 91/183 (49.73%), Postives = 122/183 (66.67%), Query Frame = 1 
Query:  439 LAGVVAAGQRLPAGSWHQADMTPPLPDDVVRLLQASRLCFLSTFSNDHPHLSLMNFTYHHADEVIILSTRRDTKKFQLVQTGRNVALLVHEFP---DAGGSSGGXXXXXXXXXXGSKVT--ITLNGTATIQEGEQAERYRDLHVRKNPNSKTFIVGPNIAIITVRVRSARICNVRDEVTVWNV 972
            + GV+   ++     ++   + PPLP +VV LL    LC+LSTF++DHPHLSLMNFTY+  DEVII+STRRDTKK+ L+Q+  NVA+LVH+FP      GSS            G   T  IT+NG A I+ GE AE YR+ H + NP S+ FIVG NIAI++V++ +ARICN+ D+VT W+V
Sbjct:   22 VTGVMRKRRKRAELGYYDGTIEPPLPPEVVALLHKCSLCYLSTFTDDHPHLSLMNFTYYQPDEVIIMSTRRDTKKYNLLQSSNNVAVLVHDFPGQRSRDGSSSSPPLHLSSDETGKMETFSITMNGRARIEAGEVAETYREEHRKNNPGSEQFIVGDNIAIVSVKIETARICNLADKVTYWDV 204
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BLAST of mRNA_E-siliculosus-1a_M_contig89.16871.1 vs. uniprot
Match: A0A7R9U5A5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5A5_9STRA)

HSP 1 Score: 153 bits (386), Expect = 4.940e-39
Identity = 81/164 (49.39%), Postives = 110/164 (67.07%), Query Frame = 1 
Query:  496 DMTPPLPDDVVRLLQASRLCFLSTFSNDH-PHLSLMNFTYHHADEVIILSTRRDTKKFQLVQTGRNVALLVHEFPDAGGSSGGXXXXXXXXXXGSKVTITLNGTATIQEGEQAERYRDLHVRKNPNSKTFIVGPNIAIITVRVRSARICNVRDEVTVWNVADSQ 984
            ++TPPLP +VVRLL+++ LC LST   D  PHLSLM FTY  A+E II+STRR ++KF  ++    VALLVH+FP                  G   +ITLNG+A+I+ G+   RYR LH+++NP  + FIVGPNIAI++V V SARICN++D+V VW +  +Q
Sbjct:   47 ELTPPLPREVVRLLKSTSLCHLSTQGVDGTPHLSLMRFTYLPAEEKIIISTRRSSQKFDFLEQNPLVALLVHDFPHM-------QDEGERGECGRTFSITLNGSASIETGDAEARYRALHLQENPEYEQFIVGPNIAIVSVTVTSARICNLQDKVKVWTLETAQ 203
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BLAST of mRNA_E-siliculosus-1a_M_contig89.16871.1 vs. uniprot
Match: A0A7S1U2J8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2J8_9STRA)

HSP 1 Score: 151 bits (381), Expect = 3.350e-38
Identity = 83/177 (46.89%), Postives = 112/177 (63.28%), Query Frame = 1 
Query:  466 RLPAGSWHQADMT------PPLPDDVVRLLQASRLCFLSTFSNDH-PHLSLMNFTYHHADEVIILSTRRDTKKFQLVQTGRNVALLVHEFPDAGGSSGGXXXXXXXXXXGSKVTITLNGTATIQEGEQAERYRDLHVRKNPNSKTFIVGPNIAIITVRVRSARICNVRDEVTVWNVA 975
            R+P       D T      PPLP +VV LL+++ LC LST  ND  PHLSLM FTY  A+E I++STRR+T KF+ +    +VALLVH+FP  G + GG          G   +ITLNG A +++G+ AE YR LH+ +NP  + FIVG +IAI++V V +ARICN+ D+V  W+ A
Sbjct:   38 RVPPPKRRHEDTTRFKIVKPPLPAEVVGLLRSTSLCHLSTQGNDGGPHLSLMRFTYVQAEEKILISTRRNTAKFEYLSQNPSVALLVHDFPHLG-AGGGEAEVDAEEAEGRTYSITLNGQAHVEDGDVAECYRALHLAENPEYEQFIVGQDIAIVSVTVDTARICNIDDKVKYWDAA 213
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BLAST of mRNA_E-siliculosus-1a_M_contig89.16871.1 vs. uniprot
Match: K8Z3W1_NANGC (Pyridoxamine phosphate n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z3W1_NANGC)

HSP 1 Score: 140 bits (353), Expect = 2.170e-34
Identity = 80/179 (44.69%), Postives = 102/179 (56.98%), Query Frame = 1 
Query:  496 DMTPPLPDDVVRLLQASRLCFLSTFSNDH-PHLSLMNFTYHHADEVIILSTRRDTKKFQLVQTGRNVALLVHEFPDAGGSSGGXXXXXXXXXX--------------------GSKVTITLNGTATIQEGEQAERYRDLHVRKNPNSKTFIVGPNIAIITVRVRSARICNVRDEVTVWN 969
            D+ PPLP  VV LLQ++R+C LST S D  PHLSLM FTY   +EVII++TR DTKK++L+ +   VA+L  +    GG+  G                              G    ITLNG A ++ GE+AERYR LH++ N     FI GP IA+ TV V SARICNV+D VT W+
Sbjct:   11 DIFPPLPPTVVALLQSTRVCHLSTASTDGLPHLSLMRFTYRREEEVIIMTTRTDTKKYELLCSMPKVAVLGEKGGGVGGNEDGGEGGSKRPHRHEKEXXXXXXXXXXXXXXXXGHTYAITLNGVARMETGEEAERYRSLHLKNNVAYSQFIEGPGIAVFTVHVMSARICNVKDRVTYWD 189
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig89.16871.1 vs. uniprot
Match: A0A7S1BJ74_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BJ74_9STRA)

HSP 1 Score: 136 bits (343), Expect = 4.760e-33
Identity = 73/158 (46.20%), Postives = 98/158 (62.03%), Query Frame = 1 
Query:  505 PPLPDDVVRLLQASRLCFLSTFSNDH--PHLSLMNFTYHHADEVIILSTRRDTKKFQLVQTGRNVALLVHEFPDAG-GSSGGXXXXXXXXXXGSKVTITLNGTATIQEGEQAERYRDLHVRKNPNSKTFIVGPNIAIITVRVRSARICNVRDEVTVWN 969
            PPLP  VV  L+ +   +LST   D   PHLSLM FTY   DE II+ST + T+K+ +++  +NVALL+H+F D G G+ GG            K +ITL G   I+ GE AERYR  H+ +N     FIVG +IAI+ V V+SARIC++ D+VT W+
Sbjct:   57 PPLPASVVSTLKKTNFAYLSTVDPDGNIPHLSLMRFTYVQEDECIIMSTNKKTRKYDMLKERKNVALLIHDFGDGGEGTEGGHGEGGNP-----KFSITLKGICKIETGEVAERYRKAHLERNGKYSQFIVGEDIAILAVYVKSARICDINDQVTTWS 209
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig89.16871.1 vs. uniprot
Match: A0A813LGU8_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LGU8_POLGL)

HSP 1 Score: 135 bits (341), Expect = 2.240e-32
Identity = 80/190 (42.11%), Postives = 109/190 (57.37%), Query Frame = 1 
Query:  430 TEGLAGVVAAGQRLPAGSWHQADMTPPLPDDVVRLLQASRLCFLSTFSND----HPHLSLMNFTYHHADEVIILSTRRDTKKFQLVQTGRNVALLVHEFPDAGGSSGGXXXXXXXXXXGSKVTITLNGTATIQEGE-QAERYRDLHVRKNPNSKTFIVGPNIAIITVRVRSARICNVRDEVTVWNVADSQ 984
            ++G+A   AA  +     W Q  + PPLP  VV+LLQ+SRL +LST ++D     PHLSLMNFTY   DEVII++TRRDT+K+  +     VA+LVH+FP                      +ITL G   +     Q E+YR +H+  NP S  FIVG NI+++ V V  AR+CN  D+VT W+ AD +
Sbjct:   58 SQGVAAPTAASPQSSDFIWEQ--VRPPLPVPVVKLLQSSRLGYLSTATHDAGSTSPHLSLMNFTYVPTDEVIIMTTRRDTQKYHNLLGQPRVAMLVHDFPTLRDQE-----TSDDIGFSRTYSITLYGKVGLPANSAQEEKYRQIHLENNPGSSGFIVGENISVLIVCVEFARLCNSDDKVTTWSAADDK 240
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BLAST of mRNA_E-siliculosus-1a_M_contig89.16871.1 vs. uniprot
Match: A0A7S2IJN9_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IJN9_9EUKA)

HSP 1 Score: 135 bits (339), Expect = 4.180e-32
Identity = 73/159 (45.91%), Postives = 96/159 (60.38%), Query Frame = 1 
Query:  496 DMTPPLPDDVVRLLQASRLCFLSTFSNDH-PHLSLMNFTY----HHADEVIILSTRRDTKKFQLVQTGRNVALLVHEFPDAGGSSGGXXXXXXXXXXGSKVTITLNGTATIQEGEQAERYRDLHVRKNPNSKTFIVGPNIAIITVRVRSARICNVRDEV 957
            D  PPLP  +   L+ S LCFL+T  ++H PHLSLM FTY        EV+I+STRR+TKKFQL+    NVALLVH+F       G            ++ +ITLNG   +QEGE AE YR +H+  N     FIVG +IAI+TV + +AR+C++ D V
Sbjct:   68 DYVPPLPKPIADALERSCLCFLATAGSEHTPHLSLMRFTYTKEFEENSEVMIISTRRNTKKFQLITCNTNVALLVHQFDTETEKDGNNYDTLGSGR--TRCSITLNGRVRVQEGEMAEHYRRIHLAANREYSQFIVGDDIAIVTVHLDTARVCDINDRV 224
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig89.16871.1 vs. uniprot
Match: R1BTA8_EMIHU (Putative_PNPOx domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BTA8_EMIHU)

HSP 1 Score: 134 bits (336), Expect = 9.860e-32
Identity = 74/167 (44.31%), Postives = 100/167 (59.88%), Query Frame = 1 
Query:  481 SWHQADMTPPLPDDVVRLLQASRLCFLSTFSNDHPHLSLMNFTYHHA-------DEVIILSTRRDTKKFQLVQTGRNVALLVHEFPDAGGSSGGXXXXXXXXXXGSKVTITLNGTATIQEGEQAERYRDLHVRKNPNSKTFIVGPNIAIITVRVRSARICNVRDEVT 960
            S   AD TPPLP+ VV++L    LCFL+T S D PHLSLM F++  +        EV+I+STRR TKK+  +   RNVALLVH+F    G +              + +ITL+G    + GE AERYR +H+ KN     FIVG +IAI+TV + +AR+C+V D V+
Sbjct:   63 SLVDADFTPPLPEPVVQVLTRCCLCFLATSSGDSPHLSLMRFSFSRSLAAQRPGAEVLIVSTRRSTKKYATLCANRNVALLVHDFA---GENESDLLNYTALEGRPRHSITLSGVVREESGEMAERYRAIHLEKNQAYAQFIVGDDIAILTVEIETARVCDVNDRVS 226
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig89.16871.1 vs. uniprot
Match: W7TPF1_9STRA (Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPF1_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.410e-30
Identity = 86/229 (37.55%), Postives = 107/229 (46.72%), Query Frame = 1 
Query:  496 DMTPPLPDDVVRLLQASRLCFLSTFSNDH-PHLSLMNFTYHHADEVIILSTRRDTKKFQLVQTGRNVALLVHEFPDA-------------------------------------------GGSSGGXXXXXXXXXXGSK---------------------------VTITLNGTATIQEGEQAERYRDLHVRKNPNSKTFIVGPNIAIITVRVRSARICNVRDEVTVWN 969
            D+ PPLP  VV LLQ++R+C LST S D  PHLSLM FTY   +EVII++TR DTKK++L+ +   VA+LVH+FP                                             G   GG          GSK                             ITLNG A ++ GE+AERYR LH++ N     FI GP IA+ TV V SARICNV+D VT W+
Sbjct:   90 DIFPPLPPTVVALLQSTRVCHLSTASTDGLPHLSLMRFTYRREEEVIIMTTRTDTKKYELLCSMPKVAVLVHDFPSLRDEEDKEXXXXXXXXXXVRSDIGDRAGEVSAKFRGNAFCGHGKGEKGGGVGGNEDGGEGGSKRPHRHEKEXXXXXXXXXXXXXXXXGHTYAITLNGVARMETGEEAERYRSLHLKNNVAYSQFIEGPGIAVFTVHVMSARICNVKDRVTYWD 318
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig89.16871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA57_9PHAE2.160e-14989.18Putative_PNPOx domain-containing protein n=2 Tax=E... [more]
A0A835ZAR3_9STRA1.360e-4849.73Putative_PNPOx domain-containing protein n=1 Tax=T... [more]
A0A7R9U5A5_9STRA4.940e-3949.39Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1U2J8_9STRA3.350e-3846.89Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
K8Z3W1_NANGC2.170e-3444.69Pyridoxamine phosphate n=1 Tax=Nannochloropsis gad... [more]
A0A7S1BJ74_9STRA4.760e-3346.20Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A813LGU8_POLGL2.240e-3242.11Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S2IJN9_9EUKA4.180e-3245.91Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
R1BTA8_EMIHU9.860e-3244.31Putative_PNPOx domain-containing protein n=2 Tax=E... [more]
W7TPF1_9STRA1.410e-3037.55Pyridoxamine 5'-phosphate oxidase-related FMN-bind... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig89contigE-siliculosus-1a_M_contig89:169767..175597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size804
Model size2126
Exons8
Hectar predicted targeting categorysignal anchor
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2E0VY@1,2S89E@2759
EggNOG free text desc.Pyridoxamine 5'-phosphate oxidase
Seed eggNOG ortholog2880.D8LSL0
Seed ortholog evalue1.5e-120
Seed ortholog score439.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig89.16871.1prot_E-siliculosus-1a_M_contig89.16871.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig89 170897..174638 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936359.654301-UTR-E-siliculosus-1a_M_contig89:169766..1708961622936359.654301-UTR-E-siliculosus-1a_M_contig89:169766..170896Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig89 169767..170896 -
1696251042.1429143-UTR-E-siliculosus-1a_M_contig89:169766..1708961696251042.1429143-UTR-E-siliculosus-1a_M_contig89:169766..170896Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig89 169767..170896 -
1622936359.8116403-UTR-E-siliculosus-1a_M_contig89:174638..1747861622936359.8116403-UTR-E-siliculosus-1a_M_contig89:174638..174786Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig89 174639..174786 -
1696251042.2374716-UTR-E-siliculosus-1a_M_contig89:174638..1747861696251042.2374716-UTR-E-siliculosus-1a_M_contig89:174638..174786Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig89 174639..174786 -
1622936359.8305852-UTR-E-siliculosus-1a_M_contig89:175553..1755971622936359.8305852-UTR-E-siliculosus-1a_M_contig89:175553..175597Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig89 175554..175597 -
1696251042.2486408-UTR-E-siliculosus-1a_M_contig89:175553..1755971696251042.2486408-UTR-E-siliculosus-1a_M_contig89:175553..175597Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig89 175554..175597 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936359.675911-CDS-E-siliculosus-1a_M_contig89:170896..1710031622936359.675911-CDS-E-siliculosus-1a_M_contig89:170896..171003Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 170897..171003 -
1696251042.1558435-CDS-E-siliculosus-1a_M_contig89:170896..1710031696251042.1558435-CDS-E-siliculosus-1a_M_contig89:170896..171003Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 170897..171003 -
1622936359.6916203-CDS-E-siliculosus-1a_M_contig89:171442..1715151622936359.6916203-CDS-E-siliculosus-1a_M_contig89:171442..171515Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 171443..171515 -
1696251042.1673388-CDS-E-siliculosus-1a_M_contig89:171442..1715151696251042.1673388-CDS-E-siliculosus-1a_M_contig89:171442..171515Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 171443..171515 -
1622936359.7102544-CDS-E-siliculosus-1a_M_contig89:171903..1720381622936359.7102544-CDS-E-siliculosus-1a_M_contig89:171903..172038Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 171904..172038 -
1696251042.17743-CDS-E-siliculosus-1a_M_contig89:171903..1720381696251042.17743-CDS-E-siliculosus-1a_M_contig89:171903..172038Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 171904..172038 -
1622936359.7283218-CDS-E-siliculosus-1a_M_contig89:172568..1726301622936359.7283218-CDS-E-siliculosus-1a_M_contig89:172568..172630Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 172569..172630 -
1696251042.1877358-CDS-E-siliculosus-1a_M_contig89:172568..1726301696251042.1877358-CDS-E-siliculosus-1a_M_contig89:172568..172630Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 172569..172630 -
1622936359.74813-CDS-E-siliculosus-1a_M_contig89:173347..1734441622936359.74813-CDS-E-siliculosus-1a_M_contig89:173347..173444Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 173348..173444 -
1696251042.200683-CDS-E-siliculosus-1a_M_contig89:173347..1734441696251042.200683-CDS-E-siliculosus-1a_M_contig89:173347..173444Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 173348..173444 -
1622936359.771332-CDS-E-siliculosus-1a_M_contig89:173852..1740071622936359.771332-CDS-E-siliculosus-1a_M_contig89:173852..174007Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 173853..174007 -
1696251042.215379-CDS-E-siliculosus-1a_M_contig89:173852..1740071696251042.215379-CDS-E-siliculosus-1a_M_contig89:173852..174007Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 173853..174007 -
1622936359.7910082-CDS-E-siliculosus-1a_M_contig89:174463..1746381622936359.7910082-CDS-E-siliculosus-1a_M_contig89:174463..174638Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 174464..174638 -
1696251042.227712-CDS-E-siliculosus-1a_M_contig89:174463..1746381696251042.227712-CDS-E-siliculosus-1a_M_contig89:174463..174638Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 174464..174638 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig89.16871.1

>prot_E-siliculosus-1a_M_contig89.16871.1 ID=prot_E-siliculosus-1a_M_contig89.16871.1|Name=mRNA_E-siliculosus-1a_M_contig89.16871.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=268bp
MVGGQFRPREAGGPAAATGGPGAGVIAAAVSAGVVVGVGGLMAVLWWRER
GSKVAGTAAAADSCAAWRVESGDGPSRPPTEGLAGVVAAGQRLPAGSWHQ
ADMTPPLPDDVVRLLQASRLCFLSTFSNDHPHLSLMNFTYHHADEVIILS
TRRDTKKFQLVQTGRNVALLVHEFPDAGGSSGGGGGSGGGGGSGSKVTIT
LNGTATIQEGEQAERYRDLHVRKNPNSKTFIVGPNIAIITVRVRSARICN
VRDEVTVWNVADSQPSA*
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mRNA from alignment at E-siliculosus-1a_M_contig89:169767..175597-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig89.16871.1 ID=mRNA_E-siliculosus-1a_M_contig89.16871.1|Name=mRNA_E-siliculosus-1a_M_contig89.16871.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5831bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:169767..175597- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CACCAAACCAACCAACCAACGTGCTCTGTGTCAGCGCACCTCAGGTGAAT
TCCTTATGCGCGAATCGCGTGCCTACACAAGTGATGTCGGGCTAAGCTTG
CTTTCGCTCCTACTCAAAGGATGGATGCGTGTGTGTGAGGGTCGCAAATT
AACGTCCAAGGTTGATATGCTGCCAACTGGTGTACGCCCAACTGCTGCCT
CTGATTTTGTGTATGAGCGCGCCGCGTTTGAATTTGAATCGCAAACCCTG
CAGCATCCGCCGTGATCTCTGTATAAACAGTAGCTGCCGTGCCGCCCTCC
ACCAATCCTGTACGCTTCTTTCCACCCGGCCGACGTGTGTTTGGGTTGGT
TGACCTGGCAGGCCTGACACCAACCACAAACGCACGCGATGTTCCATGTG
TACATTGCCTGTCGATTCAGTTGTGGTCGGAGATGCGGGGTAATACTGTT
GGGTGGGATCGGGGCGTTTGCACAGCAACAAGCTCCGGTTCACACTTGCT
GTTCATGTTGTTTTTGCTGCTCTACCCATAGGACTCCGTTGTTCTGGTTG
CCCTGGACTACGACGAGGTAGGCTCTGTCGCAGCAGTCGGCGGTTGTTCT
CGACCAACGCAGCTGTACGCCGCACACCAGTCCGACTGCTGAATCGTCTA
CATACACACCTCCCGCTCTTTTTTCTTTTTCAAAGAGCCTGCATCCTACA
ATGTAATGCTGTACGCACTACATGTGCTTCTGCCGTTCCCGAGCACACCC
TCAAGCCTACCCCATCCCTGCCCCACACCTGCCAACCCGCGCTTTCGTTA
CGTTTCCGCAGACAGTATTAGGAGACGAACAGCAGGGGGTGGGTGCCTAA
AGGCTGAGACCGCGAGTAAACCAGGCGCCCCCAGTGTTATGGTCGGTCCA
TTTTTTTCTGCCGCACGGAAACTCGAAATTTACTGATTGATTTTTCAAAA
GAAAGAGAGATGGTGGGCGGGCAGTTTCGCCCAAGGGAGGCAGGGGGACC
AGCGGCAGCGACGGGCGGTCCCGGGGCGGGAGTGATTGCTGCAGCTGTCT
CAGCGGGGGTAGTGGTCGGCGTGGGTGGTCTTATGGCCGTCCTATGGTGG
CGGGAACGAGGCTCGAAGGTGGCAGGAACAGCAGGTAGGCCCATATGGCG
GGATGTAGCGGAATGCGGGATTATTATAACGGCGAATATATTCGCCCTGT
AGCAGCAGCGGTGTCAAGCATTGTTGTGTGTTCCTGCTTTTAGTCGGGGC
GGGAGGTGCGGTCTGCCTCGAGGTTCGAAAGTCCAGCGTAACCGTTGTAG
TCAGTGTATTAGCCTTGAAAACTGCTGTGTGCCTATAAAACTTGAAGCAT
CCGATGACGGGACCCCCTTGGGCGGCTTGCTTCTTACCCGCCAGATATCA
TTAACTTTTTCTTGGAAGAAGATGTCGTCCTTCATACTAGATTTTCAGGA
TTACTCACACACGCACGCGTTTGCCCTACCAACCGCGGGAACACATGCTC
CTCAAGAGGTATCCATCCCCCCCCGGGCCCTCTCACACCCCGTCTCCACC
CCATCCTGACGCTCGTCTCTCTTGCGACGGACGGCATCAGCAGCGGCGGA
CAGCTGTGCGGCTTGGCGTGTGGAGAGCGGCGATGGGCCGTCTCGCCCGC
CAACGGAAGGGCTAGCAGGGGTTGTTGCGGCCGGGCAGCGTCTGCCCGCG
GGGTCGTGGCACCAAGCAGACATGACGCCACCCCTCCCTGACGATGTGCG
TGTCTCTCGCGCCCGCTGCGCTTTTGCTCGCATCTCCTCCTTGGTGCGCG
CCCCGCTCGCCGCGCTTCACGTCGTCTCTGGCTTTAGATGTGGTCCTTAT
CAGCACGACTCTTGTGCGCTCGATTTGGTTCGGCTTGTTTCTGTTCCGTC
TGCTCAGGGCGAATCGTGCGGTCGGTGCTTTTGGAGACAGCAGTAGCCAT
GAATAACGTAAGGATTCGAGAAATTGCCCGGGTTCGCGGGCGTTCACTTG
CAAGCGATGATGACACCCGCGTGTATTTGAGGCATACCATTAGGTGAGTA
CAGCTATTATTAGCTGGTACGACAACCCTGGGTCTGCGGTATCCCAGTCG
TGTACCGCTCGCACCCCTTTGAGCCCCATTTTTTTGTCCTTGTTTCTGGG
CAGGTGGTAAGGCTGCTGCAGGCCTCGCGGCTGTGCTTCTTGTCCACCTT
CAGCAACGACCACCCTCACTTGTCGCTCATGAACTTCACCTACCACCACG
GTAAGCGAACTTTGCCTTTTTGCTTGTGTCCCAATGGGATATTTCCATCG
GAAGAGTGGCCACTTTCTGTATTTCGGGGGGTTGTTGCTCTTGTAGCGCT
TGCTGTCTTCGTAGGTATGCAAGGGTGCACGTGGGAGTACGCCGCATGAA
ACCGCTTCGGGTGAGGGTGTTTTGTGGTGAAGCGAGTGAAGCAACGGAAC
GGTACGAGTGAGGGGTGTCAACGCGTCGCGATGCAGGCACATTCAAGAAG
CAACACTCGGAGCTGAGAATACGAACGCACCATGGCCATCAATCCTTCTT
TCCCCGCAAGTTTTTACGTGCTGAAGGTGGTCGTGCCCGCACGATGTTTC
TGTTGTCTTGCATTGCGAGACCCCACGTCGCTGCAGACGCAGACGCGCTG
CAGTTCAAGCTCCTCGAGACAGGAGGAACCGGTGGCATGATCTCTCCATC
CTTGACCACAATCATTTCCCCCGTTTCAGTCGCTGAAAAAACTGTCTTCC
GGGTGATTCGCCGCTGCCCCTCCGGATGATGATTGTTGTTAGCACTGCGT
CCTTGCGCTCCGCCGCTCTCTTCCCCCCCTGCTTCCTCCGCTGCCGCTAC
TGCCACCCCGATTGCTACCTCTGGCACTACTGACCACCCGTCTCTAACTA
TTTATTTTGTTCCGTTTACGGCCTACGTGAAACAACATACTGGTACACGT
GCTACAAACCACCTCAGCCGACGAGGTGATAATTCTGTCCACGCGACGAG
ACACAAAAAAATTCCAGCTGGTGCAGACGGTAAGTAAATGACTCGGGCGG
TCACTGTCTTACCGCTGTGGTTACCTTTCTTGTGAGAACTGCTTAAGATC
GCCCTTTTTTTCTTAAGTCGCAACGCTCAGAACTCTGATGCCGTGTCGGT
CACGCCCCAGACTTGGTTCATGCGCGGGTCACGTGTAGGGTAATGTGGGG
GACAAACGTTACCATTATTTTTCCATGGGCCGGTTCTCGGAGTGCTGCAT
CAACGCCACATTCATCCTGCTCGACCCTCTCGTCATTCCGCGCTATTTTA
GTGGGTTACAAGCGCACCTCCTCCGTGTAGAGCTGGCGGAGGTGTTCTCG
AACTTCTCGGTCCGCGTCTGGTGTTAGCTTGCCCCCTGCTGTCGTTTTAC
ATCTTCTTCCTGCGGTATCTTGATCCTCTTGGCTTTTTCGTGCCTACTCT
CGGAGCAGGCACATGCCGCAACTCGCCTCTTCCTCCGGTGATCTTGGTTC
CCTGTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCGGAGCAGGGGCGTAACGTGGCGCTCTTGGTTCACGAGTTCCCCGACGC
AGGCGGCAGCTCCGGCGGCGGCGGCGGTAGCGGCGGCGGCGGCGGTAGCG
GCAGCAAGGTGACCATCACACTCAACGGGACGGCAACGATTCAGGTGAGG
ACAGGGCCACTGGATGAACGACGGGCGGGGAGATGGGAGGATTCTGTGTC
GGGGGGGGGGGGCTTTTCGGGGGGCGGCGGTACCGCGGCGAGGGCAGTCG
TGTGGTATCCAAGTATCGAAACGTCATGATGTGTGTGCCGAGAGACAGCT
GTAAAGGAGAGGTACACAGAGAGCCGTTCTCTCGACAACGTGACGCACGT
GTTCTCGTGATCCATGTTGTGTGGACATCGTCCGACACCCGGGGTTGATA
TCTCTGTTCCTGCTGCTGTCGTTCTTTTGCGCCGTCGTCGCTTGTTGCGT
GAGGAGTCGCTGCCGCCTTCACGCCCCCTGTCCCCCTTGCCTGGCTTGGT
CTGTCGTGCTTCATCTTGGTGTCGCTCTCTAGGAAGGGGAGCAGGCAGAG
CGGTACAGAGACCTCCACGTCAGGAAGAACCCGAACTCCAAGACCTTCAT
CGTCGGTGAGACACCCCCCCACTTCTTGGATTTGGTGTTGGCGACTATTT
TCTCGTGCCGCTAGCAAGGCTACTTGTCCCCCGACAGGCCGCCTGAGGTC
GGGACTTGAGCGGCACTTGCTTTCGTCGGTGGTTTTGCAGTATTATCGAT
CGCCTTAACTTTTGGTTTTCCTTGCGGAAGGCCGCGAAACCGGTTTGTCA
TGCCTTTAGACTTTCCCTGCCATCCTGCAGAAGGCGACATCAAACATAGC
TATCAATTTGAGCATGTCGTTCAGCCACTATAATTGTTGAGATCGGGCAA
TGGCACCGCTAGTTCTTTTCTTTCCAGCTCCTCGTTGCGGCAGTCAAAAT
GACATCGTGGCTCTTTCATTTTGACTCCTTTTCAACTCTCATTGATCGTC
GGTCCAACGCTTGTCGTCGATACCCCCCGTCCGGTGGTGAACAGGCCCGA
ACATCGCCATCATCACCGTAAGGGTGCGCTCCGCGCGGATCTGCAACGTT
CGCGACGAGGTCACCGTGTGGAACGTCGCCGACTCCCAACCAAGCGCGTA
GCGTAGCAAACACCATTTCGGTTGGTTCCTTCCAGCCGTATAGTTTTGTG
GTCCCCGGGGGGGCGGGTGGTAATGGTCCTCAGACCCTTGGGAGGCTGTG
CCTTGCTCGACGCGCGTGCTGGCTGTCACGGGAGCCGATTTTCCGGCTGT
GGTGAAAAGGGGCTTGGGTTTCAAGGCACCCAGGACGACTTCGAGTGCTC
AGGCTGTAGCCAATGGGCGGCTTGAATTTTGTGGCACCCAGGACGACTTT
TGTTCAGTTTTGTGATGGCGACTTGGTTGTTATTGTTGTTGTTGTGTGGG
CGCTTGCTGGAGGGGCACGGGGAGGACGTCAATGCGACAGACTCGCATGT
CTATTGCTTGTCCAGCGGCTGCTGGCGAAGCTGTGGCGGGAATGCGATCG
CTCGCTCCCGTCCTCGTGAGGCTTGGAAGGGGAAATCACGGGGCCGGGTG
TCAGAGGCGCGGGACTATCATCATCACACGCTGGTATTATTTCACTCATT
TTTTTTTCTGTGTCGCTTCTTTTTCGAACAGTCTTGTGTGAGGATTTAGA
GAAAGCAGCAAATTAAACTTTAGAACGAAGAACACGTTTCATGCCGTACG
CGACTTGGACCGCGGGGTGGTAGCGCTTCGCCATCCGTAAGGCCAGCGGC
CACCCAATTAGATTCGTTCGGCTGGTCGTGCAGGCGTTTCGTGATTTTAC
ACGGTGCGGTAGACGGAGATTTTCATGGTGTTCATGCTGGGAAGTCGCTA
GAATGTTGGAGCCGATGATCGTCGGTGTAGCCGCCCTTGGGATGCAACTG
CCCGTGGCCGTCCTAAATAAATATCTTGCCGCCCATAGAACTGGGGCGTG
AATGGCGTCGTCTTTCCTCTTTATTGTCGGCAGTGTTTTTCTGTGTTGGT
GGCCCTACTTTTATTTTTTTTTGCTGCAGGCGGTGATGGGTCAATCCCAC
GTTTGGTAGTATTCCGCGCCCGAAAAACACTGCCCCCTTGCAGGCTTGGA
CAAGTTGGTATTGCAGGATGCTGCTGGGAGAGCGGACGGCGTGTTGCGGA
AAGCGTGCTAGACTAGAACCAGAACCAACGCTGTCGTTTTGGTGTGCGCC
AGAAATAGCATCGGTATGAGGTGTTGGACGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig89:169767..175597-

>mRNA_E-siliculosus-1a_M_contig89.16871.1 ID=mRNA_E-siliculosus-1a_M_contig89.16871.1|Name=mRNA_E-siliculosus-1a_M_contig89.16871.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1608bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:169767..175597- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTGGGCGGGCAGTTTCGCCCAAGGGAGGCAGGGGGACCAGCGGCAGC
GACGGGCGGTCCCGGGGCGGGAGTGATTGCTGCAGCTGTCTCAGCGGGGG
TAGTGGTCGGCGTGGGTGGTCTTATGGCCGTCCTATGGTGGCGGGAACGA
GGCTCGAAGGTGGCAGGAACAGCAGATGGTGGGCGGGCAGTTTCGCCCAA
GGGAGGCAGGGGGACCAGCGGCAGCGACGGGCGGTCCCGGGGCGGGAGTG
ATTGCTGCAGCTGTCTCAGCGGGGGTAGTGGTCGGCGTGGGTGGTCTTAT
GGCCGTCCTATGGTGGCGGGAACGAGGCTCGAAGGTGGCAGGAACAGCAG
CAGCGGCGGACAGCTGTGCGGCTTGGCGTGTGGAGAGCGGCGATGGGCCG
TCTCGCCCGCCAACGGAAGGGCTAGCAGGGGTTGTTGCGGCCGGGCAGCG
TCTGCCCGCGGGGTCGTGGCACCAAGCAGACATGACGCCACCCCTCCCTG
ACGATCAGCGGCGGACAGCTGTGCGGCTTGGCGTGTGGAGAGCGGCGATG
GGCCGTCTCGCCCGCCAACGGAAGGGCTAGCAGGGGTTGTTGCGGCCGGG
CAGCGTCTGCCCGCGGGGTCGTGGCACCAAGCAGACATGACGCCACCCCT
CCCTGACGATGTGGTAAGGCTGCTGCAGGCCTCGCGGCTGTGCTTCTTGT
CCACCTTCAGCAACGACCACCCTCACTTGTCGCTCATGAACTTCACCTAC
CACCACGGTGGTAAGGCTGCTGCAGGCCTCGCGGCTGTGCTTCTTGTCCA
CCTTCAGCAACGACCACCCTCACTTGTCGCTCATGAACTTCACCTACCAC
CACGCCGACGAGGTGATAATTCTGTCCACGCGACGAGACACAAAAAAATT
CCAGCTGGTGCAGACGCCGACGAGGTGATAATTCTGTCCACGCGACGAGA
CACAAAAAAATTCCAGCTGGTGCAGACGGGGCGTAACGTGGCGCTCTTGG
TTCACGAGTTCCCCGACGCAGGCGGCAGCTCCGGCGGCGGCGGCGGTAGC
GGCGGCGGCGGCGGTAGCGGCAGCAAGGTGACCATCACACTCAACGGGAC
GGCAACGATTCAGGGGCGTAACGTGGCGCTCTTGGTTCACGAGTTCCCCG
ACGCAGGCGGCAGCTCCGGCGGCGGCGGCGGTAGCGGCGGCGGCGGCGGT
AGCGGCAGCAAGGTGACCATCACACTCAACGGGACGGCAACGATTCAGGA
AGGGGAGCAGGCAGAGCGGTACAGAGACCTCCACGTCAGGAAGAACCCGA
ACTCCAAGACCTTCATCGTCGGAAGGGGAGCAGGCAGAGCGGTACAGAGA
CCTCCACGTCAGGAAGAACCCGAACTCCAAGACCTTCATCGTCGGCCCGA
ACATCGCCATCATCACCGTAAGGGTGCGCTCCGCGCGGATCTGCAACGTT
CGCGACGAGGTCACCGTGTGGAACGTCGCCGACTCCCAACCAAGCGCGTA
GGCCCGAACATCGCCATCATCACCGTAAGGGTGCGCTCCGCGCGGATCTG
CAACGTTCGCGACGAGGTCACCGTGTGGAACGTCGCCGACTCCCAACCAA
GCGCGTAG
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