mRNA_E-siliculosus-1a_M_contig89.16866.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig89.16866.1
Unique NamemRNA_E-siliculosus-1a_M_contig89.16866.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig89.16866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig89contigE-siliculosus-1a_M_contig89:125521..128292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size663
Model size663
Exons5
Ec32 orthologEc-09_002100.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig89.16866.1prot_E-siliculosus-1a_M_contig89.16866.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig89 125521..128292 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936358.859353-CDS-E-siliculosus-1a_M_contig89:125520..1257211622936358.859353-CDS-E-siliculosus-1a_M_contig89:125520..125721Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 125521..125721 -
1696251041.7503877-CDS-E-siliculosus-1a_M_contig89:125520..1257211696251041.7503877-CDS-E-siliculosus-1a_M_contig89:125520..125721Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 125521..125721 -
1622936358.879548-CDS-E-siliculosus-1a_M_contig89:126164..1263401622936358.879548-CDS-E-siliculosus-1a_M_contig89:126164..126340Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 126165..126340 -
1696251041.7653184-CDS-E-siliculosus-1a_M_contig89:126164..1263401696251041.7653184-CDS-E-siliculosus-1a_M_contig89:126164..126340Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 126165..126340 -
1622936358.8971639-CDS-E-siliculosus-1a_M_contig89:126767..1269091622936358.8971639-CDS-E-siliculosus-1a_M_contig89:126767..126909Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 126768..126909 -
1696251041.7834756-CDS-E-siliculosus-1a_M_contig89:126767..1269091696251041.7834756-CDS-E-siliculosus-1a_M_contig89:126767..126909Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 126768..126909 -
1622936358.9178438-CDS-E-siliculosus-1a_M_contig89:127527..1275761622936358.9178438-CDS-E-siliculosus-1a_M_contig89:127527..127576Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 127528..127576 -
1696251041.7972937-CDS-E-siliculosus-1a_M_contig89:127527..1275761696251041.7972937-CDS-E-siliculosus-1a_M_contig89:127527..127576Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 127528..127576 -
1622936358.935724-CDS-E-siliculosus-1a_M_contig89:128197..1282921622936358.935724-CDS-E-siliculosus-1a_M_contig89:128197..128292Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 128198..128292 -
1696251041.8088691-CDS-E-siliculosus-1a_M_contig89:128197..1282921696251041.8088691-CDS-E-siliculosus-1a_M_contig89:128197..128292Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 128198..128292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig89.16866.1

>prot_E-siliculosus-1a_M_contig89.16866.1 ID=prot_E-siliculosus-1a_M_contig89.16866.1|Name=mRNA_E-siliculosus-1a_M_contig89.16866.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=221bp
MSHGGDDTIWEYVRPSSSFQNAGHYAPPSTPRVHAFPALPRTEPADWKGQ
PPVGGVGMDVCKGRHNPYRGGFTSFDLRFTYLREGGHQVSRSPGPGNYDT
RHLTGGALVKRPKTPSPCFRRPGGRLDFGVGGTWHKETPLESAEGYGTVR
GNLKKQAQHYSLSFRSKADRLIVNKPAKTTHEGIGPGCYDLSKDGKSVGV
WTEKRVGRRGRGGMGSTNQFL
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mRNA from alignment at E-siliculosus-1a_M_contig89:125521..128292-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig89.16866.1 ID=mRNA_E-siliculosus-1a_M_contig89.16866.1|Name=mRNA_E-siliculosus-1a_M_contig89.16866.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2772bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:125521..128292- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGCCACGGGGGCGACGATACCATCTGGGAGTACGTTCGGCCATCATC
TAGTTTCCAGAACGCAGGGCATTATGCGCCCCCATCAACCCCAAGGTGAC
TTGCATCGCTGGGTGATAGCCGAGGGGAAGCGGTACACGAAACCTGGGAG
TCTCGTTTTAGAGGTACAGCAGAGAGAAAACCATTCACCACCAGCAGAGC
ATGCTACTGGTACATATGTATGTGCTCCGTTGTAGCAAGGCAGTCGTCAT
CATGGCTCGGGCGGTTCCCTCACAACCTTGCGACTTGAAGATGTATACTC
AGTCAGGAAATTGTAGAGATCGATGCTTTGAGAGAACATTCAGAGAGTAC
CAGCTGAGTACAGTACATACAGTACAGCAGTACAGGGTGTTCGCTTCACG
CCGACCGGAAGACTGACGGCTTTACACTGGTCTGTAATTGAGCCCAGTCG
ATCCATATTTAAACAGTACACATACGCGCCTCCACACCTCCAACATACCA
CGCAGCTCGCTGTCCGCGGACGCAGTTGGTTAGCACTGCGTGTGTACCGT
GGAAGTACTATTTATATGAAATTGGAATGAGTTGGGCGTTCCCCGCTACC
GCAGGGTGATGGTTCATGATATCTACATAGACTACAGCTCGTCGTGTGTA
TTGTCATTTCCCTGTCCTTCCATGTATTTGTTGGGCCGTGCCACGGTGAA
TGGGCTTCGTTGGCAGGGTGCATGCCTTCCCAGCTTTGCCGCGGACGGAG
CCGGCGGATTGGAAGGTACCACGATTTCTCGACACAGCCAGTGCCCGTTG
CCCTGAGTTCGTGTCCGCAACACAACAAGTAATCTACCATTTACGGGAGA
TTCTTGTCCGTGACATGCTAATGAACCACGACAACCGATGGAAGTCTCAT
TAGTTGGTACCCAACTGTAGTAGCTCGCGCTCAACCGATACTACGACTCA
CAATTATTTCTTGCGGAACCCTGCGGGCCTCACCATCGGTTGCCAAGCGA
AAGGCCAGAATTCCACTGTGATTGAGCTTGTGTCTTTGCATTATCTCACT
TCATAGGCAGCGAATGTTCTTCCGCTATGTCACTGTTATCATGCCTCACC
GACCAGGACACCCTAAACATGCATCACTTTCTTGCTGCTACGTAGAAGCG
TCCGGTGGTGACAGCGTTTGTACCACGAGTGAGTTCCCCCAGTGCGGAAA
AATTTGTTTCTGAAACGAGTGAAGCTCCTAAACCACACGAACAGTATAAC
CCCGTCCGAGGAGTCAGTTGATTGCCAACAACAATATCAGTAGTAGCACC
ACACGTATCAATACCAGCAGCCGTACCACTCACAACCTGGACCCATCAAC
ACAACCATCGTGCTTTTACCACTACCGATGCAGGGGCAGCCACCGGTCGG
GGGTGTTGGGATGGACGTGTGTAAGGGTCGCCACAATCCTTATCGCGGAG
GGTTCACGTCGTTCGACCTCCGCTTCACATACCTCAGGGAGGGCGGGCAT
CAGGTGTCTCGATCGCCGGGACCCGGTAAGAACAGCCAGAGGCATTGTAG
ATCATTCCAAGCGCAACCGCCTGTCGCGGATACTCTATACAATCGTTTCA
AAGTTGACGGCGTTATCAATGGTACGCGTACCACGATGCTCGATTGCCAG
GACCTCCAGAACGATTCGCAACACTCAGGACGATATAATTCTATATATTC
GTCACGGATAAATCTGGTTCCCGAGTACACAGGTGGTTTCTCCACAATTT
TTCCGAGCTGTTCACTCCTCCCATGAACTTCCACGGTCAAGAAACGTTGG
TCTCAAGTCGGGCTGTTGCCCCCGTAGACCAGTTGATCGAGAGTTATTCG
AGGAGAGGGTCGGAGTGGCAGACCTTATGGTCGCGTCTTGAGGCATAGAC
AGGCTTGTGATATCACTACCTTTTCATGAACCCATTGGCCCAACTGCTGC
AGGCAACTACGACACTCGACACCTTACCGGCGGTGCCCTGGTTAAGCGTC
CGAAGACCCCGTCCCCGTGCTTCCGTCGCCCTGGTGGCCGGTTGGACTTC
GGCGTCGGTGGGACATGGCACAAGGAAACGCCGCTCGAGAGCGCTGAGGG
GTACGGCACTGTTCGGGGAAACTTGAAGGTAACGACTTCGGGCCGCAGCT
CTCTGCAGCATGTACTCTTGAGCTCAACCGTACTTCTTCTCTTCTCGAGC
TGTTTTACAGCAAGCCCAGCGAGTGACTAGAGCAATGTACGTGGCTGTTT
GGAGCCCCACGACATCATACGTGTCACCACTGTGCCGCAATGCTCGCTGT
TGTGGCACGAGCAACTCGTTCACTTCGCCTCGGGGCGGTACAGATGCATT
CAACGGGCGCTTACGAAACAGGCAGCCGATCAACTGCTTCAGGCATGTCG
AGTCCTGTTGTGAAACCGTAACCACGTTGCCTTTTTGGTTCGGAACGGTC
CATCTCGGAAAGCCCCAGCAAGACTGGAGGCAGACACATGTTCACGGCGC
CTCCCTGTTGGCTGTGAAATTTTTCCCGACCCACCACTCCTTCAAATTCA
CCCCTAACTCCAAACCACCAGAAGCAGGCTCAGCACTACAGCCTAAGCTT
TCGGTCGAAGGCGGACAGGCTAATAGTTAACAAACCGGCCAAGACCACCC
ACGAAGGGATCGGTCCCGGCTGCTACGACCTCTCCAAGGATGGCAAGTCC
GTCGGGGTATGGACGGAGAAGCGGGTGGGCCGAAGGGGTCGGGGGGGAAT
GGGATCGACTAACCAGTTCCTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig89:125521..128292-

>mRNA_E-siliculosus-1a_M_contig89.16866.1 ID=mRNA_E-siliculosus-1a_M_contig89.16866.1|Name=mRNA_E-siliculosus-1a_M_contig89.16866.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1326bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:125521..128292- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGCCACGGGGGCGACGATACCATCTGGGAGTACGTTCGGCCATCATC
TAGTTTCCAGAACGCAGGGCATTATGCGCCCCCATCAACCCCAAGATGAG
CCACGGGGGCGACGATACCATCTGGGAGTACGTTCGGCCATCATCTAGTT
TCCAGAACGCAGGGCATTATGCGCCCCCATCAACCCCAAGGGTGCATGCC
TTCCCAGCTTTGCCGCGGACGGAGCCGGCGGATTGGAAGGGTGCATGCCT
TCCCAGCTTTGCCGCGGACGGAGCCGGCGGATTGGAAGGGGCAGCCACCG
GTCGGGGGTGTTGGGATGGACGTGTGTAAGGGTCGCCACAATCCTTATCG
CGGAGGGTTCACGTCGTTCGACCTCCGCTTCACATACCTCAGGGAGGGCG
GGCATCAGGTGTCTCGATCGCCGGGACCCGGGGCAGCCACCGGTCGGGGG
TGTTGGGATGGACGTGTGTAAGGGTCGCCACAATCCTTATCGCGGAGGGT
TCACGTCGTTCGACCTCCGCTTCACATACCTCAGGGAGGGCGGGCATCAG
GTGTCTCGATCGCCGGGACCCGGCAACTACGACACTCGACACCTTACCGG
CGGTGCCCTGGTTAAGCGTCCGAAGACCCCGTCCCCGTGCTTCCGTCGCC
CTGGTGGCCGGTTGGACTTCGGCGTCGGTGGGACATGGCACAAGGAAACG
CCGCTCGAGAGCGCTGAGGGGTACGGCACTGTTCGGGGAAACTTGAAGGC
AACTACGACACTCGACACCTTACCGGCGGTGCCCTGGTTAAGCGTCCGAA
GACCCCGTCCCCGTGCTTCCGTCGCCCTGGTGGCCGGTTGGACTTCGGCG
TCGGTGGGACATGGCACAAGGAAACGCCGCTCGAGAGCGCTGAGGGGTAC
GGCACTGTTCGGGGAAACTTGAAGAAGCAGGCTCAGCACTACAGCCTAAG
CTTTCGGTCGAAGGCGGACAGGCTAATAGTTAACAAACCGGCCAAGACCA
CCCACGAAGGGATCGGTCCCGGCTGCTACGACCTCTCCAAGGATGGCAAG
TCCGTCGGGGTATGGACGGAGAAGCGGGTGGGCCGAAGGGGTCGGGGGGG
AATGGGATCGACTAACCAGTTCCTCAAGCAGGCTCAGCACTACAGCCTAA
GCTTTCGGTCGAAGGCGGACAGGCTAATAGTTAACAAACCGGCCAAGACC
ACCCACGAAGGGATCGGTCCCGGCTGCTACGACCTCTCCAAGGATGGCAA
GTCCGTCGGGGTATGGACGGAGAAGCGGGTGGGCCGAAGGGGTCGGGGGG
GAATGGGATCGACTAACCAGTTCCTC
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