mRNA_E-siliculosus-1a_M_contig884.16855.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig884.16855.1
Unique NamemRNA_E-siliculosus-1a_M_contig884.16855.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig884.16855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig884contigE-siliculosus-1a_M_contig884:4132..4970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size240
Model size326
Exons3
Ec32 orthologEc-11_002120.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig884.16855.1prot_E-siliculosus-1a_M_contig884.16855.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig884 4566..4970 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936354.6403606-UTR-E-siliculosus-1a_M_contig884:4131..41741622936354.6403606-UTR-E-siliculosus-1a_M_contig884:4131..4174Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig884 4132..4174 -
1696251040.0244076-UTR-E-siliculosus-1a_M_contig884:4131..41741696251040.0244076-UTR-E-siliculosus-1a_M_contig884:4131..4174Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig884 4132..4174 -
1622936354.6529613-UTR-E-siliculosus-1a_M_contig884:4522..45651622936354.6529613-UTR-E-siliculosus-1a_M_contig884:4522..4565Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig884 4523..4565 -
1696251040.0354178-UTR-E-siliculosus-1a_M_contig884:4522..45651696251040.0354178-UTR-E-siliculosus-1a_M_contig884:4522..4565Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig884 4523..4565 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936354.669818-CDS-E-siliculosus-1a_M_contig884:4565..46691622936354.669818-CDS-E-siliculosus-1a_M_contig884:4565..4669Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig884 4566..4669 -
1696251040.050066-CDS-E-siliculosus-1a_M_contig884:4565..46691696251040.050066-CDS-E-siliculosus-1a_M_contig884:4565..4669Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig884 4566..4669 -
1622936354.6812878-CDS-E-siliculosus-1a_M_contig884:4834..49701622936354.6812878-CDS-E-siliculosus-1a_M_contig884:4834..4970Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig884 4835..4970 -
1696251040.0627606-CDS-E-siliculosus-1a_M_contig884:4834..49701696251040.0627606-CDS-E-siliculosus-1a_M_contig884:4834..4970Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig884 4835..4970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig884.16855.1

>prot_E-siliculosus-1a_M_contig884.16855.1 ID=prot_E-siliculosus-1a_M_contig884.16855.1|Name=mRNA_E-siliculosus-1a_M_contig884.16855.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=80bp
MQLPLGLVPLVPCIPYVLRGSGRTTEGKGSTQNTIVSTYEGVPEGGLGQR
CWHPPSPLRTRRHVCPKINVRLSFPRVAS*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig884:4132..4970-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig884.16855.1 ID=mRNA_E-siliculosus-1a_M_contig884.16855.1|Name=mRNA_E-siliculosus-1a_M_contig884.16855.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=839bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig884:4132..4970- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCAACTCCCCCTCGGGCTGGTGCCGCTCGTTCCTTGCATCCCCTACGT
CCTCCGTGGGTCGGGAAGAACAACAGAGGGCAAAGGTTCAACACAAAATA
CCATCGTCAGCACCTATGAAGGAGTACCCGAAGGAGGTACGTGAGGCGTG
TGTCATGTTGTTTGTTCCCGCTGCCGGGATGTGATCGAAAAAACAAAATG
CGGCGATGAGTCCTGTAGGTACGTAACCAGAACTACTGATATGTAGAGGT
TAACCTTGGGTCTTTTGTATATGTGTGTGAACCGCCCGTCCTTCGTTCCA
GGACTCGGACAGCGCTGTTGGCACCCTCCCAGCCCACTACGGACACGCCG
GCACGTGTGTCCGAAGATAAACGTCCGGTTGTCTTTTCCTCGAGTTGCAT
CATAGACCGGGCACTCGTGTGGGCACCACCACCTACTGGCATAGACAGGT
GCAGACCTGGTGGAGAGAGGAAGGACGTCGATTCTGGTCTGATGCAGAGT
ACGACAACACTCCTGGATCCCTTGGGGTCGGTGTACGATGCAGAGTACGT
ATCGGGCAGTCGTTATTTTCTTCTAGGAACTCTTGGGATGGTGATTCTCC
ATCCACGTTAAGGCATACCATGTCCTTGCGCCGAAATCCAGTTGACCCAG
AGTTCCTTGTTTTTGCCCAAAACCATTGCCACTCCATGGTCGACTAAAAT
GATTCGAGATCGCCTAGGGTATACACGGCGATTTTTGTCTTACGCCAAAC
GTATTCTTACCGCCCGATGCCGTCTGCCATGATTGTGCTGTTGAAGAACG
TGTCTGGCAGTGCGATGCGGGCCTGCAACAGCGCGAACG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig884:4132..4970-

>mRNA_E-siliculosus-1a_M_contig884.16855.1 ID=mRNA_E-siliculosus-1a_M_contig884.16855.1|Name=mRNA_E-siliculosus-1a_M_contig884.16855.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=480bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig884:4132..4970- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCAACTCCCCCTCGGGCTGGTGCCGCTCGTTCCTTGCATCCCCTACGT
CCTCCGTGGGTCGGGAAGAACAACAGAGGGCAAAGGTTCAACACAAAATA
CCATCGTCAGCACCTATGAAGGAGTACCCGAAGGAGATGCAACTCCCCCT
CGGGCTGGTGCCGCTCGTTCCTTGCATCCCCTACGTCCTCCGTGGGTCGG
GAAGAACAACAGAGGGCAAAGGTTCAACACAAAATACCATCGTCAGCACC
TATGAAGGAGTACCCGAAGGAGGACTCGGACAGCGCTGTTGGCACCCTCC
CAGCCCACTACGGACACGCCGGCACGTGTGTCCGAAGATAAACGTCCGGT
TGTCTTTTCCTCGAGTTGCATCATAGGACTCGGACAGCGCTGTTGGCACC
CTCCCAGCCCACTACGGACACGCCGGCACGTGTGTCCGAAGATAAACGTC
CGGTTGTCTTTTCCTCGAGTTGCATCATAG
back to top