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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig88.16849.1 vs. uniprot
Match: D8LK93_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK93_ECTSI) HSP 1 Score: 416 bits (1070), Expect = 4.980e-143 Identity = 289/325 (88.92%), Postives = 292/325 (89.85%), Query Frame = 2
Query: 86 MDRTEGGRDSPQDSKLLSGHGDAERGGETGEPRPADDDQEKFDPTPASPAVGDRAPATVELYPSYIRPPPGAGDGGQQQEGQERETERGYEGGDRVRLLVGSFNVGNSPLTDLAPWLPYGGKGFDLIVVGLQESTYRPPRGARDSSPFQRTLSLSPSNSLSPIKTGGGSGXXXXXXXXXRSPLRWGGMQSGDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGSISGGVGPGMAAAAATRGGVFGESQQRWRASVSSFEDMAGAAAASCRLKSPRGXXXXXXXXXXXGRLGQGLVVGSKEEEGAGGGV 1060
MDRTEGGRDSPQDSKLLSGHG AERGGETGEP P DDDQ KFDPTPA PAVGDRAPATVELYPSY+RPPPGA DGG+QQEGQERETERGYEGGDRVRLLVGSFNVGNSPLTDLAPWLPYGGKGFDLIVVGLQESTYRPPRGARDSSPFQRTLSLSPSNSLSPIKTG XXXXXXXXX SPLRWG MQSGD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RRGSISGGVGPGMA AAATRGGV GESQQR RASVSSFEDMAGAA ASCRLKSPRG X GRLGQ LV SKE+EGAGGGV
Sbjct: 1 MDRTEGGRDSPQDSKLLSGHGGAERGGETGEP-PPDDDQVKFDPTPALPAVGDRAPATVELYPSYVRPPPGADDGGKQQEGQERETERGYEGGDRVRLLVGSFNVGNSPLTDLAPWLPYGGKGFDLIVVGLQESTYRPPRGARDSSPFQRTLSLSPSNSLSPIKTGXXXXXXXXXXXXXXSPLRWGAMQSGD-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRKRRGSISGGVGPGMAGAAATRGGVSGESQQRRRASVSSFEDMAGAAEASCRLKSPRGGGXGSRRG---GRLGQNLVGVSKEKEGAGGGV 320
BLAST of mRNA_E-siliculosus-1a_M_contig88.16849.1 vs. uniprot
Match: A0A7S3YA27_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA27_HETAK) HSP 1 Score: 69.7 bits (169), Expect = 2.290e-10 Identity = 25/49 (51.02%), Postives = 40/49 (81.63%), Query Frame = 2
Query: 353 YEGGDRVRLLVGSFNVGNSPLTDLAPWLPYGGKGFDLIVVGLQESTYRP 499
Y GG ++LL+G+FN+GN+ + ++ WLPY G+G+D+I +GLQEST++P
Sbjct: 29 YLGGSEIQLLIGTFNMGNAEIENIGEWLPYEGEGYDVIAIGLQESTFKP 77
BLAST of mRNA_E-siliculosus-1a_M_contig88.16849.1 vs. uniprot
Match: A0A7S1CC49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CC49_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 1.430e-6 Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 2
Query: 356 EGGDRVRLLVGSFNVGNS-PLTDLAPWLPYGGKGFDLIVVGLQESTYR--PPR 505
EG +R+ V ++NVGN P D APW+P GG D+IVVGLQESTY+ PP+
Sbjct: 48 EGATPLRVHVCTWNVGNKMPRADFAPWIPAGGGDHDVIVVGLQESTYKMKPPK 100
BLAST of mRNA_E-siliculosus-1a_M_contig88.16849.1 vs. uniprot
Match: A0A8K1CJL7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJL7_PYTOL) HSP 1 Score: 60.1 bits (144), Expect = 3.070e-6 Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 2
Query: 368 RVRLLVGSFNVGNS----PLTDLAPWLPYGGKGFDLIVVGLQESTYRPPRGARDSSPFQRTLSLSPSNSLSPIKT 580
++RLLV S+NVGN+ + W+P GG GFD+I VGLQES+YR + RT+S S S+S + T
Sbjct: 2 QLRLLVASWNVGNAMPPKSREGVHDWVPAGGGGFDVIAVGLQESSYREKSASESEREGGRTMSRKSSRSVSAVMT 76
BLAST of mRNA_E-siliculosus-1a_M_contig88.16849.1 vs. uniprot
Match: A0A1V9ZWR6_9STRA (Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWR6_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 3.850e-6 Identity = 25/43 (58.14%), Postives = 35/43 (81.40%), Query Frame = 2
Query: 371 VRLLVGSFNVGNS-PLTDLAPWLPYGGKGFDLIVVGLQESTYR 496
+++L+GS+NVGN P T + PWLP GG GFD+I VGLQES+++
Sbjct: 30 LQVLIGSWNVGNKMPPTSVDPWLPQGGGGFDVIAVGLQESSFK 72
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Start | 1 |
| Stop | 0 |
| Cds size | 975 |
| Model size | 1060 |
| Exons | 3 |
| Ec32 ortholog | Ec-16_002530.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622936353.5850573-UTR-E-siliculosus-1a_M_contig88:622464..622549 | 1622936353.5850573-UTR-E-siliculosus-1a_M_contig88:622464..622549 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig88 622465..622549 + |
| 1696251039.3994427-UTR-E-siliculosus-1a_M_contig88:622464..622549 | 1696251039.3994427-UTR-E-siliculosus-1a_M_contig88:622464..622549 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig88 622465..622549 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622936353.600515-CDS-E-siliculosus-1a_M_contig88:622549..622854 | 1622936353.600515-CDS-E-siliculosus-1a_M_contig88:622549..622854 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig88 622550..622854 + |
| 1696251039.408628-CDS-E-siliculosus-1a_M_contig88:622549..622854 | 1696251039.408628-CDS-E-siliculosus-1a_M_contig88:622549..622854 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig88 622550..622854 + |
| 1622936353.6131501-CDS-E-siliculosus-1a_M_contig88:624368..624474 | 1622936353.6131501-CDS-E-siliculosus-1a_M_contig88:624368..624474 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig88 624369..624474 + |
| 1696251039.4182131-CDS-E-siliculosus-1a_M_contig88:624368..624474 | 1696251039.4182131-CDS-E-siliculosus-1a_M_contig88:624368..624474 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig88 624369..624474 + |
| 1622936353.6251776-CDS-E-siliculosus-1a_M_contig88:625163..625727 | 1622936353.6251776-CDS-E-siliculosus-1a_M_contig88:625163..625727 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig88 625164..625727 + |
| 1696251039.4301171-CDS-E-siliculosus-1a_M_contig88:625163..625727 | 1696251039.4301171-CDS-E-siliculosus-1a_M_contig88:625163..625727 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig88 625164..625727 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig88.16849.1 >prot_E-siliculosus-1a_M_contig88.16849.1 ID=prot_E-siliculosus-1a_M_contig88.16849.1|Name=mRNA_E-siliculosus-1a_M_contig88.16849.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=325bp
MDRTEGGRDSPQDSKLLSGHGDAERGGETGEPRPADDDQEKFDPTPASPA VGDRAPATVELYPSYIRPPPGAGDGGQQQEGQERETERGYEGGDRVRLLV GSFNVGNSPLTDLAPWLPYGGKGFDLIVVGLQESTYRPPRGARDSSPFQR TLSLSPSNSLSPIKTGGGSGGGVATGGSSRSPLRWGGMQSGDPDDTPPPG AGLLASSSPSMSAETPPAPPLSSPPPPPPSSGFLYRKRRGSISGGVGPGM AAAAATRGGVFGESQQRWRASVSSFEDMAGAAAASCRLKSPRGGGGGGGG SRRGGRLGQGLVVGSKEEEGAGGGV back to topmRNA from alignment at E-siliculosus-1a_M_contig88:622465..625727+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig88.16849.1 ID=mRNA_E-siliculosus-1a_M_contig88.16849.1|Name=mRNA_E-siliculosus-1a_M_contig88.16849.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3263bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:622465..625727+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) CGGCAAGCACAGAATAGAGAGAGCTTCCGAGCATCGGCACTCGGCGTGCT
AGGCATAGCACGAGCCGTTTGCCGGACGGAAGACGATGGATCGGACAGAG
GGGGGCCGAGACTCTCCGCAGGACTCCAAGCTTCTGTCGGGGCACGGCGA
CGCAGAAAGGGGTGGGGAAACTGGCGAGCCCCGTCCTGCCGATGATGATC
AAGAGAAATTTGATCCGACACCGGCGTCACCAGCAGTAGGAGATAGGGCG
CCTGCCACGGTAGAGCTGTATCCATCGTACATCCGACCGCCGCCGGGGGC
GGGCGACGGCGGGCAGCAGCAGGAGGGACAGGAGAGAGAGACGGAGAGGG
GCTACGAAGGCGGAGATCGTGTCAGACTTCTCGTTGGAAGGTAACTGCTG
TACATCACAACTCCTTGTTTTGTAAAATCGGCTCGCTGTGTCCCCTAGCA
GAACATCCGCTTCTTGTTGTGCTGAACCCACTTACAACGATTAATGGATG
GTGTAACCTCTGCTCCATGTCAAGTAGATTGCATCGGATGCGGTTATCAT
CTACGAGAGTTGACAGAGAGACAATTGCATTCAGTTCTTAAAGGCGGGGG
CTGCTCTGTGGGGCGTATGTACTGCTGTGATGGCAACACTATCGGTGATT
AGCAGTGGCACCAAAACCACCAACAGCAACTCCCGAACGCAGCAGTCGCA
TCATCTGCCGTATTCGTAGATATACAGACACTATGTTGGTCTGCTGTCGA
GACAATAACAGGCGCGAGAGCTGGTGCCTGGTAGTAGGTAGTAGTCGGCG
CAGCAGCAGTGACGCGTGCGTTCGTTCCACAACCAGAGCGCCCACGATAC
AGCAAACGCTGTTAGCTGTTAGGCCAGGGTTCGAGTGTAACGATGGTTAC
GCTTTCCCGACCGACCCTTTCTTTCAGTTGGGAAGTGGATGTACCTTCGG
GTGTTGCCGAGTGCGGAATAAGCACGGCGATGTCGATTAACCAAGTGGGT
GGGTGTTGAGAGTAAAACCCTTTGTGGGGCCTTTGACGCGGCACGACCGT
ACGCTCAAAGTCGCGTGCTTGGTTACTGTACGTGTGCTCCGTCGGTGGTG
GTGTTATCTACTGCTGCTGCTTACCGCAAAATCGGAGAGTCAAGGCGATG
GTGGAGTACAAGTATGGCCCCGACAAGGGTACCCGTGCGGTGTCGTCATC
TGCAGCAGCATTCACCACGAGTAGACTTTGCTGCGGTTCAGAGATGCTGC
GTTGGTGATTCCTACACACCTCGAGAAGATGGATTCGCTCCTTTTTTGAT
CCAACGGCAGGCCGGGGGCTGACTGAACTGACACACCTTATGATGGCACG
ATGATGCACGACCCCGCCGCCAAGATACCCCAGAATAACCTCCCCCGCCC
CTCCACCTCCTTTGCTGCCTCTGCTCAAACACCATCGTTATTTTGGCGTT
GGTGGTTGATCCTAACATCCTAACCCTCTGTAGACGCAGTACTTCGTTAT
GTAGTTCTCGTATCCAGAACGTGCCCACCGAAGTTTGGATTATAGTTTGG
ATGTTGAGGGTTTGGCTTTCACACGAAGCACAAGGAAATTGGACCCTGCC
AGCACTAAAACCTGTTTTCTCCCTGTTGGTACCACTGATAACATAAGGAG
CGAGGGTAGCACAACAGTTACAGAGCTTGATATTTACTTTTGTCTACGTT
CTTCGCTCTGGTTTATGGAAGGTGGGTAGGTGCATGGGTGGGTAGGTGTT
GGCTTGTTGTAGGCGGGAAGCTGGGCGGGATGAAAGCCAGCATGTTAGGG
GCAGCAACGTAAAAATGAAACTGAATTTCCTTTCCAACGCGGACTGCTGT
AGCTCCATGCCTGGCCCCCAAGCCAACAACCCCGACCTATCTTTGCACAC
GCAGTTTCAACGTGGGGAATAGCCCGCTGACTGATCTCGCTCCGTGGCTT
CCGTACGGAGGGAAGGGGTTCGATCTCATCGTCGTTGGTCTTCAGGAGAG
CACGTACAGGGTGAGCAACGGAGAGAGAGGGGGTGGGTGGGAGGGGGGGG
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGATGGCGTTTTGTC
CACCTACCTGTGCCTGATTGTGTCGGGTGTTGCTGTTGCCATTGTGGTTG
GTCTTGTGTTTTTTGTCGTCATCGTTGTCGGAGCTGTTGATGGGGTTGTT
CGGAGGAACATGTACAGGGCGATCGGGGTATGGTATGGGTGTGGGTGGGC
GCAGAAAGAAGTCGTTCGAACCAGTGGGCTGCCGGAGGGGAGTTCGTTGG
CACCGCGGGTATTCTATCATGTTCGTCGTAGCTCTCGGTGTAGTCGTTGT
CGTTGTTGCTGTTCAAGGTAGAACCAGCCGAGTTTGCCCCTCCTCGAGAT
CGCGAGAGTCCCCGTCCGTCCGTCTTTCGCTAGTTCGTACACCTTGCGCC
GTTTCATGCGTGTCGTATCTCCAAACTCCCCCCTAGCCGCCATCTCTGAT
CTCGGTCCTGTGGGAACAACGCTCCTCCCACTTGAGGACGCGCGGTCAAT
GGTCCAACAACTAGGGCGCCCAAAACATGAGTGCGCTCCGTCCAGGCGTT
TTAGGGATGCGAGGCCAATGGTCTAACGACCGCGGCATGCGTTTACATGA
ATACCCCCCCCATCCCCACCCCCTCATTGCAACAACGATATCGGCGCAGC
CCCCTAGAGGCGCCCGAGACTCGTCCCCGTTCCAGCGCACACTGAGCCTC
AGCCCCAGCAACAGCCTCTCGCCGATCAAGACAGGCGGCGGCAGCGGCGG
TGGCGTCGCCACCGGCGGCAGCAGCCGCTCCCCACTGCGTTGGGGGGGCA
TGCAGAGCGGAGACCCGGACGACACCCCCCCTCCCGGGGCCGGGCTGCTG
GCGTCGTCGTCCCCTTCGATGTCGGCGGAAACTCCACCCGCGCCGCCGCT
GTCGTCGCCGCCGCCGCCCCCGCCATCATCCGGGTTTCTTTACCGCAAGC
GCCGGGGATCGATCTCTGGCGGGGTGGGGCCGGGCATGGCGGCGGCGGCG
GCGACGAGGGGAGGCGTTTTCGGCGAGTCGCAACAGCGGTGGCGGGCCTC
GGTCTCGTCGTTCGAAGACATGGCGGGAGCGGCGGCGGCGAGTTGTAGGC
TAAAGAGCCCGCGCGGCGGCGGCGGCGGCGGCGGCGGCAGCCGTCGGGGT
GGCCGCCTTGGACAAGGCTTGGTGGTAGGGAGCAAGGAAGAGGAGGGGGC
AGGGGGGGGGGTC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:622465..625727+ >mRNA_E-siliculosus-1a_M_contig88.16849.1 ID=mRNA_E-siliculosus-1a_M_contig88.16849.1|Name=mRNA_E-siliculosus-1a_M_contig88.16849.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1950bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:622465..625727+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) ATGGATCGGACAGAGGGGGGCCGAGACTCTCCGCAGGACTCCAAGCTTCT GTCGGGGCACGGCGACGCAGAAAGGGGTGGGGAAACTGGCGAGCCCCGTC CTGCCGATGATGATCAAGAGAAATTTGATCCGACACCGGCGTCACCAGCA GTAGGAGATAGGGCGCCTGCCACGGTAGAGCTGTATCCATCGTACATCCG ACCGCCGCCGGGGGCGGGCGACGGCGGGCAGCAGCAGGAGGGACAGGAGA GAGAGACGGAGAGGGGCTACGAAGGCGGAGATCGTGTCAGACTTCTCGTT GGAAGATGGATCGGACAGAGGGGGGCCGAGACTCTCCGCAGGACTCCAAG CTTCTGTCGGGGCACGGCGACGCAGAAAGGGGTGGGGAAACTGGCGAGCC CCGTCCTGCCGATGATGATCAAGAGAAATTTGATCCGACACCGGCGTCAC CAGCAGTAGGAGATAGGGCGCCTGCCACGGTAGAGCTGTATCCATCGTAC ATCCGACCGCCGCCGGGGGCGGGCGACGGCGGGCAGCAGCAGGAGGGACA GGAGAGAGAGACGGAGAGGGGCTACGAAGGCGGAGATCGTGTCAGACTTC TCGTTGGAAGTTTCAACGTGGGGAATAGCCCGCTGACTGATCTCGCTCCG TGGCTTCCGTACGGAGGGAAGGGGTTCGATCTCATCGTCGTTGGTCTTCA GGAGAGCACGTACAGGTTTCAACGTGGGGAATAGCCCGCTGACTGATCTC GCTCCGTGGCTTCCGTACGGAGGGAAGGGGTTCGATCTCATCGTCGTTGG TCTTCAGGAGAGCACGTACAGGCCCCCTAGAGGCGCCCGAGACTCGTCCC CGTTCCAGCGCACACTGAGCCTCAGCCCCAGCAACAGCCTCTCGCCGATC AAGACAGGCGGCGGCAGCGGCGGTGGCGTCGCCACCGGCGGCAGCAGCCG CTCCCCACTGCGTTGGGGGGGCATGCAGAGCGGAGACCCGGACGACACCC CCCCTCCCGGGGCCGGGCTGCTGGCGTCGTCGTCCCCTTCGATGTCGGCG GAAACTCCACCCGCGCCGCCGCTGTCGTCGCCGCCGCCGCCCCCGCCATC ATCCGGGTTTCTTTACCGCAAGCGCCGGGGATCGATCTCTGGCGGGGTGG GGCCGGGCATGGCGGCGGCGGCGGCGACGAGGGGAGGCGTTTTCGGCGAG TCGCAACAGCGGTGGCGGGCCTCGGTCTCGTCGTTCGAAGACATGGCGGG AGCGGCGGCGGCGAGTTGTAGGCTAAAGAGCCCGCGCGGCGGCGGCGGCG GCGGCGGCGGCAGCCGTCGGGGTGGCCGCCTTGGACAAGGCTTGGTGGTA GGGAGCAAGGAAGAGGAGGGGGCAGGGGGGGGGGTCCCCCCTAGAGGCGC CCGAGACTCGTCCCCGTTCCAGCGCACACTGAGCCTCAGCCCCAGCAACA GCCTCTCGCCGATCAAGACAGGCGGCGGCAGCGGCGGTGGCGTCGCCACC GGCGGCAGCAGCCGCTCCCCACTGCGTTGGGGGGGCATGCAGAGCGGAGA CCCGGACGACACCCCCCCTCCCGGGGCCGGGCTGCTGGCGTCGTCGTCCC CTTCGATGTCGGCGGAAACTCCACCCGCGCCGCCGCTGTCGTCGCCGCCG CCGCCCCCGCCATCATCCGGGTTTCTTTACCGCAAGCGCCGGGGATCGAT CTCTGGCGGGGTGGGGCCGGGCATGGCGGCGGCGGCGGCGACGAGGGGAG GCGTTTTCGGCGAGTCGCAACAGCGGTGGCGGGCCTCGGTCTCGTCGTTC GAAGACATGGCGGGAGCGGCGGCGGCGAGTTGTAGGCTAAAGAGCCCGCG CGGCGGCGGCGGCGGCGGCGGCGGCAGCCGTCGGGGTGGCCGCCTTGGAC AAGGCTTGGTGGTAGGGAGCAAGGAAGAGGAGGGGGCAGGGGGGGGGGTC back to top
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