mRNA_E-siliculosus-1a_M_contig88.16845.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig88.16845.1
Unique NamemRNA_E-siliculosus-1a_M_contig88.16845.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig88.16845.1 vs. uniprot
Match: D8LK97_ECTSI (Divergent RAB-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK97_ECTSI)

HSP 1 Score: 860 bits (2221), Expect = 5.570e-311
Identity = 511/558 (91.58%), Postives = 517/558 (92.65%), Query Frame = 1
Query:    1 MGRSCCRRVIDALCPCFRRNRLGSSPSVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKTGANVREAFMFATTRAVGEYLARARLKQSAGRGGGATVKKTMQKVPGLQRALRTRASVLDVFKGLTGRRRYPQKAQPVIVLPASPPXXXXXXXXXXXXXXXXXXXXXX-AAERPLQRLPSSAQRGGRGGLGQGTTARAWALRAAAPPHRPHLSRVKSSSPRGLATAAXXXXXXXXXXQGLQQRRPESPEARSGAGDAATSSLLERPELSPVEVERGSEGAAFRKIGASTVATTTAAEDKESVLACGRRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEESATKQLREASSFWLDKWGIKAAKTDATRERHSKEFRDSYP 1671
            MGRSCCRRV+DALCPCFR+NRLGSSPSVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGED GDQ REEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQ VGSQTGQDTAAEFGMPFVEVSAKTG NVREAFMFATTRAVGE+LAR RLKQSAGRG GATVKKTMQKVPGLQRALRTRASVLDVFKGLTGRRRYPQKAQPVIVLP    XXXXXXXXXXXXXXXXXXXXXX AAERPLQRLPSSA+RGGRGGLGQGTTARAWALRAAAPPHR HLSR KS SPRGLATA+          QGLQQRRPESP A SG GDAATSSLLERPELSPVEVER SEGAAFRKIGAST+ATTTAAEDKESVLACGRRS           XXXXXXXXXXXXXXXXXXXXXXX EESATKQLREASSFWLDKWGIKAAKTDATRERHSKEFR SYP
Sbjct:    1 MGRSCCRRVLDALCPCFRQNRLGSSPSVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDGGDQTREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQ-VGSQTGQDTAAEFGMPFVEVSAKTGTNVREAFMFATTRAVGEHLARTRLKQSAGRGRGATVKKTMQKVPGLQRALRTRASVLDVFKGLTGRRRYPQKAQPVIVLPXXXXXXXXXXXXXXXXXXXXXXXXXXXAAERPLQRLPSSARRGGRGGLGQGTTARAWALRAAAPPHRRHLSRAKSPSPRGLATASAAAAAS----QGLQQRRPESPVALSGTGDAATSSLLERPELSPVEVERRSEGAAFRKIGASTLATTTAAEDKESVLACGRRSSGTSPERTVSTXXXXXXXXXXXXXXXXXXXXXXXXEESATKQLREASSFWLDKWGIKAAKTDATRERHSKEFRGSYP 553          
BLAST of mRNA_E-siliculosus-1a_M_contig88.16845.1 vs. uniprot
Match: A0A6H5KHP3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP3_9PHAE)

HSP 1 Score: 785 bits (2028), Expect = 8.910e-282
Identity = 457/532 (85.90%), Postives = 472/532 (88.72%), Query Frame = 1
Query:    1 MGRSCCRRVIDALCPCFRRNRLGSSPSVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKTGANVREAFMFATTRAVGEYLARARLKQSAGRGGGATVKKTMQKVPGLQRALRTRASVLDVFKGLTGRRRYPQKAQPVIVLPASPPXXXXXXXXXXXXXXXXXXXXXXAA-ERPLQRLPSSAQRGGRGGLGQGTTARAWALRAAAPPHRPHLSRVKSSSPRGLATAAXXXXXXXXXXQGLQQRRPESPEARSGAGDAATSSLLERPELSPVEVERGSEGAAFRKIGASTVATTTAAEDKESVLACGRRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEESATKQLREASSFWL 1593
            MGRSCCRR +DALCPCFRR+RLGSS SVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEE AVAGKTLPSGGRGKGGST KQAP ADL+VKINVYDTSGKPGYR+VNSTYLLAFDAVLFVYDISSVSTLNELR+YF++PEHR+KLAAKKKAGMAMLLVGNKCDMPLSQRQ VGSQTGQDTAAEFGMPFVEVSAKTG NVREAFMFATTRAVGE+LAR RLKQSAGRG GATVKKTMQKVPGLQRALRTRASVLDVF GLTGRRRYPQKAQPV +LPA+PP     XXXXXXXXXXXXXXXXX   ERPLQR  SSA+RGGRGGLGQGTTA+AWALRAAAPPHR HLSR KSSSPRGL TAA          QGLQQRRPESP ARSG GDAATSSLLERPELSPV+VERGSEGAAFRK GAST+ATTTAAEDKESVLACGRRS                       XXXXXXXXXXXAEESATKQLREASSFWL
Sbjct:    1 MGRSCCRRALDALCPCFRRHRLGSSTSVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEETAVAGKTLPSGGRGKGGSTAKQAPHADLKVKINVYDTSGKPGYRDVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNNPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQ-VGSQTGQDTAAEFGMPFVEVSAKTGTNVREAFMFATTRAVGEHLARTRLKQSAGRGRGATVKKTMQKVPGLQRALRTRASVLDVFTGLTGRRRYPQKAQPVGILPAAPPTAGNAXXXXXXXXXXXXXXXXXXXXERPLQRPSSSARRGGRGGLGQGTTAQAWALRAAAPPHRCHLSRAKSSSPRGLTTAAAAAF------QGLQQRRPESPVARSGTGDAATSSLLERPELSPVDVERGSEGAAFRKGGASTLATTTAAEDKESVLACGRRSSGTSPERTVSTSGGSHGDVSQGAXXXXXXXXXXXAEESATKQLREASSFWL 525          
BLAST of mRNA_E-siliculosus-1a_M_contig88.16845.1 vs. uniprot
Match: M5X0Z8_PRUPE (Uncharacterized protein n=6 Tax=Prunus TaxID=3754 RepID=M5X0Z8_PRUPE)

HSP 1 Score: 99.4 bits (246), Expect = 3.920e-20
Identity = 68/224 (30.36%), Postives = 106/224 (47.32%), Query Frame = 1
Query:   91 ASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKTGANVREAFMFATTRAVGEYLA 762
            A  +HD  +  +L G+ GVGK+ L  R+ DG FT     T G+DF I+T++L                             GK             ++K+ ++DT+G+  +R + + Y      +L VYD++  S+ N +R +  + E    ++  K      +LVGNK DM  S+R  V +  GQ  A E+G+ F+E SAKT  NV E F F+  R + + LA
Sbjct:    8 ARADHDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL----------------------------DGK-------------RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASVSVNK------ILVGNKADMDESKRA-VPASKGQALADEYGIKFLETSAKTNMNVEEVF-FSIGRDIKQRLA 182          
BLAST of mRNA_E-siliculosus-1a_M_contig88.16845.1 vs. uniprot
Match: A0A6S8IR56_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8IR56_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.190e-19
Identity = 60/214 (28.04%), Postives = 96/214 (44.86%), Query Frame = 1
Query:   82 VSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKTGANVREAF 723
            +S AS  +DM +  ++ G+ GVGKT L  R+ +  F+     T G+DF IK +D+                                            ++K+ ++DT+G+  +R + ++Y      +L VYD++   +   +R + S  +    +   K      +LVGNKCDM     + V +  GQ  AAEFG+PF EVSAK    V E+F
Sbjct:    1 MSQASAPYDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNVDI-----------------------------------------QGTRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWISQIQQHADVHVNK------ILVGNKCDM--MDEKVVSTAEGQKLAAEFGIPFAEVSAKNDIKVDESF 165          
BLAST of mRNA_E-siliculosus-1a_M_contig88.16845.1 vs. uniprot
Match: A0A0W4ZI42_PNEC8 (GTP-binding protein ypt2 n=1 Tax=Pneumocystis carinii (strain B80) TaxID=1408658 RepID=A0A0W4ZI42_PNEC8)

HSP 1 Score: 96.3 bits (238), Expect = 3.700e-19
Identity = 60/210 (28.57%), Postives = 98/210 (46.67%), Query Frame = 1
Query:   94 SGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKTGANVREAF 723
            +G +D  +  +L G+ GVGK+ L  R+ D  FT     T G+DF I+T++L                             GK             ++K+ ++DT+G+  +R + + Y      +L VYD++   +   +R + S+ E           G+  +LVGNKCD    +R+ +  + GQ  A EFG+PF+E SAK+  NV +AF
Sbjct:    6 TGNYDYLIKLLLIGDSGVGKSCLLLRFSDDFFTPSFITTIGIDFKIRTIEL----------------------------DGK-------------RIKLQIWDTAGQERFRTITAAYYRGAMGILIVYDVTDEKSFQNVRLWVSNVEQHAS------EGVNKILVGNKCDW--EERRVISEEQGQALAQEFGIPFLETSAKSNINVDDAF 166          
BLAST of mRNA_E-siliculosus-1a_M_contig88.16845.1 vs. uniprot
Match: A0A1A8K6D4_NOTKU (RAB8B, member RAS oncogene family n=5 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8K6D4_NOTKU)

HSP 1 Score: 95.9 bits (237), Expect = 6.640e-19
Identity = 71/262 (27.10%), Postives = 117/262 (44.66%), Query Frame = 1
Query:   43 PCFRRNRLGSSPSVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKTGANVREAFMFATTRAVGEYLARARLKQSAGRGGGATVKKTMQK 828
            P  RR ++   P+        D  L  I+ G  GVGKTSL  R+ D  F      T GVDF IKT++L                                          + ++++ ++DT+G+  +R + + Y      ++ VYDI +  + + ++ +  + E       +K      +++GNKCDM  + R+QV    G+  A ++G+ F+E SAK+G NV EAF +   R +   L  ++   S+G G G  VK T +K
Sbjct:    3 PQSRRRKMPPRPA--------DFKLQIIIIGSRGVGKTSLMERYTDDTFCEACKSTVGVDFKIKTVEL-----------------------------------------REKKIRLQIWDTAGQERFRTITTAYYRGAMGIMLVYDICNEKSFDNIKNWIRNIEEHASSDVEK------MILGNKCDM--TDRRQVSKDRGEKLAIDYGVKFLETSAKSGLNVEEAF-YTMARDILHNLC-SKATDSSGEGSGKPVKITDKK 205          
BLAST of mRNA_E-siliculosus-1a_M_contig88.16845.1 vs. uniprot
Match: A0A139AHQ4_GONPJ (Putative ethylene-responsive small GTP-binding protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AHQ4_GONPJ)

HSP 1 Score: 95.5 bits (236), Expect = 7.190e-19
Identity = 61/215 (28.37%), Postives = 101/215 (46.98%), Query Frame = 1
Query:   82 VSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKTGANVREAFM 726
            ++  S  +D  +  +L G+ GVGK+ L  R+ D  FT     T G+DF I+T+DL                             GK             +VK+ ++DT+G+  +R + + Y      +L VYD++   + N +R +  + E           G++ +LVGNKCDM  ++++ V  + GQ  A E+G+ F+E SAK+   V EAF+
Sbjct:    1 MAAKSASYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTPSFITTIGIDFKIRTVDL----------------------------DGK-------------RVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNVRNWIRNIEQHAT------EGVSKILVGNKCDM--NEKRAVTKEQGQALADEYGIRFIETSAKSNQGVEEAFL 166          
BLAST of mRNA_E-siliculosus-1a_M_contig88.16845.1 vs. uniprot
Match: A0A1Y2HP65_9FUNG (Ras family-domain-containing protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HP65_9FUNG)

HSP 1 Score: 95.1 bits (235), Expect = 1.050e-18
Identity = 58/214 (27.10%), Postives = 100/214 (46.73%), Query Frame = 1
Query:   82 VSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKTGANVREAF 723
            ++  S  +D  +  +L G+ GVGK+ L  R+ D  FT     T G+DF I+T++L                             GK             ++K+ ++DT+G+  +R + + Y      +L +YD++   + N +R +  + E          AG+  +LVGNKCD+  + ++ +  + GQ+ A EFG+ F+E SAK+   V EAF
Sbjct:    1 MAAKSSTYDHLIKLLLIGDSGVGKSCLLLRFTDDSFTPSFITTIGIDFKIRTIEL----------------------------DGK-------------RIKLQIWDTAGQERFRTITTAYYRGAMGILLIYDVTDERSFNNIRNWIRNIEQHAS------AGVNKILVGNKCDV--ADKKVISKEQGQELADEFGIKFIETSAKSNIGVEEAF 165          
BLAST of mRNA_E-siliculosus-1a_M_contig88.16845.1 vs. uniprot
Match: F0YC43_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC43_AURAN)

HSP 1 Score: 94.7 bits (234), Expect = 1.080e-18
Identity = 63/212 (29.72%), Postives = 98/212 (46.23%), Query Frame = 1
Query:   91 ASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSD-PEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKTGANVREAF 723
            A G +D+ +  ++ G+  VGKTSL  R+ +  F+     T G+DF IKT++L                             GK             +VK+ ++DT+G+  +R +  +Y      ++ VYDI+   T N +R + +   EH D    K       +LVGNKCD   S  ++V +  G+  A E+G+ F+E SAK   NV EAF
Sbjct:    3 AHGPYDLQIKLLMIGDSAVGKTSLLLRYANDTFSSTFITTIGIDFKIKTINL----------------------------DGK-------------RVKLQIWDTAGQEQFRTITRSYFRGAQGIVLVYDITDRGTFNSVRSWMAQINEHADGQVNK-------ILVGNKCDN--SSARKVSADEGRKLADEYGVRFIETSAKQNVNVTEAF 164          
BLAST of mRNA_E-siliculosus-1a_M_contig88.16845.1 vs. uniprot
Match: A0A1D1ZIW7_9ARAE (Ras-related protein Rab-8A n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZIW7_9ARAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.370e-18
Identity = 60/210 (28.57%), Postives = 97/210 (46.19%), Query Frame = 1
Query:   94 SGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKTGANVREAF 723
            S  +D  +  +L G+ GVGK+ L  R+ D  FT     T G+DF I+T++L                             GK             ++K+ ++DT+G+  +R + + Y      +L VYD++   + N +R +FS+ E           G+  +L+GNKCD    +++ +  + GQ  A EFG+ F+E SAK   NV EAF
Sbjct:    6 SAAYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTPSFITTIGIDFKIRTIEL----------------------------DGK-------------RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRNWFSNIEQHAS------EGVNKILIGNKCDW--LEKKVIAKEQGQLLADEFGIKFLETSAKANTNVEEAF 166          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig88.16845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK97_ECTSI5.570e-31191.58Divergent RAB-like GTPase n=1 Tax=Ectocarpus silic... [more]
A0A6H5KHP3_9PHAE8.910e-28285.90Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
M5X0Z8_PRUPE3.920e-2030.36Uncharacterized protein n=6 Tax=Prunus TaxID=3754 ... [more]
A0A6S8IR56_9STRA2.190e-1928.04Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A0W4ZI42_PNEC83.700e-1928.57GTP-binding protein ypt2 n=1 Tax=Pneumocystis cari... [more]
A0A1A8K6D4_NOTKU6.640e-1927.10RAB8B, member RAS oncogene family n=5 Tax=Nothobra... [more]
A0A139AHQ4_GONPJ7.190e-1928.37Putative ethylene-responsive small GTP-binding pro... [more]
A0A1Y2HP65_9FUNG1.050e-1827.10Ras family-domain-containing protein n=1 Tax=Caten... [more]
F0YC43_AURAN1.080e-1829.72Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A1D1ZIW7_9ARAE1.370e-1828.57Ras-related protein Rab-8A n=1 Tax=Anthurium amnic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig88contigE-siliculosus-1a_M_contig88:594775..598637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1674
Model size1674
Exons6
Ec32 orthologEc-16_002590.1
Ec32 ortholog descriptiondivergent RAB-like GTPase
Hectar predicted targeting categorymitochondrion
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG0084@1,KOG0084@2759
EggNOG free text desc.GTPase activity
KEGG Pathwayko05134,map05134
KEGG koko:K07874
Seed eggNOG ortholog2880.D8LK97
Seed ortholog evalue4.5e-249
Seed ortholog score867.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig88.16845.1prot_E-siliculosus-1a_M_contig88.16845.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig88 594775..598637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936352.575288-CDS-E-siliculosus-1a_M_contig88:594774..5952781622936352.575288-CDS-E-siliculosus-1a_M_contig88:594774..595278Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 594775..595278 +
1696251039.0840318-CDS-E-siliculosus-1a_M_contig88:594774..5952781696251039.0840318-CDS-E-siliculosus-1a_M_contig88:594774..595278Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 594775..595278 +
1622936352.5884037-CDS-E-siliculosus-1a_M_contig88:595602..5957221622936352.5884037-CDS-E-siliculosus-1a_M_contig88:595602..595722Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 595603..595722 +
1696251039.0969982-CDS-E-siliculosus-1a_M_contig88:595602..5957221696251039.0969982-CDS-E-siliculosus-1a_M_contig88:595602..595722Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 595603..595722 +
1622936352.601794-CDS-E-siliculosus-1a_M_contig88:596072..5962911622936352.601794-CDS-E-siliculosus-1a_M_contig88:596072..596291Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 596073..596291 +
1696251039.1070795-CDS-E-siliculosus-1a_M_contig88:596072..5962911696251039.1070795-CDS-E-siliculosus-1a_M_contig88:596072..596291Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 596073..596291 +
1622936352.618992-CDS-E-siliculosus-1a_M_contig88:596906..5974001622936352.618992-CDS-E-siliculosus-1a_M_contig88:596906..597400Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 596907..597400 +
1696251039.1179917-CDS-E-siliculosus-1a_M_contig88:596906..5974001696251039.1179917-CDS-E-siliculosus-1a_M_contig88:596906..597400Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 596907..597400 +
1622936352.6326983-CDS-E-siliculosus-1a_M_contig88:597731..5979871622936352.6326983-CDS-E-siliculosus-1a_M_contig88:597731..597987Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 597732..597987 +
1696251039.1290755-CDS-E-siliculosus-1a_M_contig88:597731..5979871696251039.1290755-CDS-E-siliculosus-1a_M_contig88:597731..597987Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 597732..597987 +
1622936352.6461413-CDS-E-siliculosus-1a_M_contig88:598556..5986371622936352.6461413-CDS-E-siliculosus-1a_M_contig88:598556..598637Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 598557..598637 +
1696251039.1388462-CDS-E-siliculosus-1a_M_contig88:598556..5986371696251039.1388462-CDS-E-siliculosus-1a_M_contig88:598556..598637Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 598557..598637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig88.16845.1

>prot_E-siliculosus-1a_M_contig88.16845.1 ID=prot_E-siliculosus-1a_M_contig88.16845.1|Name=mRNA_E-siliculosus-1a_M_contig88.16845.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=558bp
MGRSCCRRVIDALCPCFRRNRLGSSPSVSGASGEHDMSLNFILHGECGVG
KTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEEPA
VAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLL
AFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKC
DMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKTGANVREAFMFATTRAVG
EYLARARLKQSAGRGGGATVKKTMQKVPGLQRALRTRASVLDVFKGLTGR
RRYPQKAQPVIVLPASPPTAGNTSTAATTSASGGGGGGGSAAERPLQRLP
SSAQRGGRGGLGQGTTARAWALRAAAPPHRPHLSRVKSSSPRGLATAAAA
AAAAAAASQGLQQRRPESPEARSGAGDAATSSLLERPELSPVEVERGSEG
AAFRKIGASTVATTTAAEDKESVLACGRRSSGTSPERTVSTGGGGGGGGV
SQGAAAAAAAAAARAEESATKQLREASSFWLDKWGIKAAKTDATRERHSK
EFRDSYP*
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mRNA from alignment at E-siliculosus-1a_M_contig88:594775..598637+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig88.16845.1 ID=mRNA_E-siliculosus-1a_M_contig88.16845.1|Name=mRNA_E-siliculosus-1a_M_contig88.16845.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3863bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:594775..598637+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGGCGGAGCTGCTGCAGACGCGTTATCGACGCTCTGTGCCCTTGCTT CCGTCGAAACCGCTTGGGATCGTCGCCGTCGGTAAGTGGCGCTTCGGGCG AGCACGACATGAGCCTGAACTTCATTCTGCACGGGGAGTGCGGCGTAGGG AAGACGAGCCTCAGGAACCGGTGGGTCGACGGCATCTTCACGGGAGACGT TGCACCCACGTTCGGCGTAGACTTCAACATAAAAACTCTCGACCTGGTGC AAGAAGAAGGGGAAGACGAGGGCGACCAGGCGCGAGAGGAAGAGCCTGCC GTCGCAGGCAAGACCTTACCGAGCGGAGGACGAGGAAAAGGTGGGTCCAC GACCAAACAGGCGCCGTGCGCGGATCTGCAGGTGAAGATCAACGTGTACG ACACGAGTGGCAAGCCTGGCTATCGAGAAGTTAACAGCACGTACCTGCTG GCCTTCGACGCGGTGCTCTTCGTCTACGACATTTCCTCGGTGTCTACGCT CAACGTAAGAAGAGTAATCGCCGGTGCGACATTTAAAGAATATGAGAAGG CGGACGTAGCTGCGTGTCTTACAACGTGTCGCCGAGGGATCTCCTATTTT CTGCGCATGTATGTATGCGCGCATGGCTGCATTTGAAGCAAGCAACAGCC TACCGCTGCTTGCTCACGACGCGCGCACGTAACATAGACATAACATACCA TGTTGTCGGCGTTGGGTGTAAACGACGAACAATCGCACAACACGTAACCT ACTGTACACCCAATGCCTACACGTAAGAAGAGTCGACATGGACCCGCTAC TTGCCTTCTCGTTTTCGACACTGGGCAGGAACTGCGCCGATATTTCAGCG ACCCAGAGCACCGTGACAAGCTTGCGGCGAAGAAGAAAGCAGGCATGGCA ATGCTATTGGTGGGGAACAAGTGCGACATGCCGCTATCGCAACGACAGGT GAGAGGGTAAGGGGGGAATGGAGATTATGTACAGGCTCTTCTTGGATGAC TGCCTTTTGTTGTGCCCCGTACATGTCAGCCTTTCGTGGCAGAGTAGGTC GTCAAACAGTAATTAACCCTGAGCCATTAATATCCGTCCCCCACGCGGCA ATTCGCGCGTACGTAGACGAAACCTCCGTGAGACCCCCCCCCCCAAGTAT GTCCATGCATCGTGCGTCTTCATCCAAACATCGTGTTGTCTCTGCTTTAT GTTCGCACCACGACCCCCGCCACCCTCGCATGCACAACTATCCCCCAACC CACACCTGCTCATGCTCCTTCGCGTTTGGTTCGTGGATGTGGGGAGAGCA GGTCGGGTCTCAGACAGGGCAAGACACTGCGGCAGAGTTCGGTATGCCCT TTGTAGAGGTGAGCGCCAAGACCGGGGCCAACGTGAGAGAGGCCTTCATG TTCGCCACGACTCGAGCCGTCGGGGAGTACCTCGCCCGCGCCAGGCTGAA GCAGTCGGCGGGCAGGGGGGGGGGGGCGACGGTGAAGAAGACGATGCAGA AGGTTCCGGGTCTTCAGGTATAGAGAGAACCAAGACACACATTTTGCAGC AGTTGCTAATGTTCTGCCCGTTTCCGTTACCATTGTCTATTCATACGTAT GACTGCCCAGCGCGCAGTTCGGTACGGCGTTGTCTAATGTATGCCCGACA ACATGCAATAGTGTGGGACGTATTCTCGTCAAACCTTGCTAGACCACTTG ATGCCAATGGCAAAGAGATGCACGCCCTATCCTCGAAAAACAAACGTGAA GATAACTTGGTGTGAATGCGAGGGGACGAAAATGATCTTTGAAGGTGGTT ACGATTTCTTAAGTCTCGCCGAGGCAACGAGGGGGCACGAAAGCGAGGCA AGCCCTGCTCTCGAAAATCCAGATGCAGGCAGTTTGGCAGCATTGTTCGT GCACGCACGGGGCTGAGGTTATCTTACACATTCGTTACCCGTTTCTTAGG AGTCTCCGAGGCGATGAACGGCAGGCAGCGGCAACCGCAAAGCGACGATG GCTAAACACAAAGTTTCGTGGCGCCTCGCAATGGAACCCAACGAACGGCA AAACTTGACCATCCTCACGCCTGACACAACCTAGCCCCACCCCCCGCGCG TCCGCAACTTGCGTTGGTTTTGAGAAAAACAGCGCGCTCTGCGCACGAGG GCTAGCGTGCTGGACGTGTTCAAAGGCCTGACGGGGCGTCGCCGTTACCC CCAGAAAGCCCAACCCGTCATCGTCCTCCCGGCATCCCCACCCACCGCCG GCAACACCTCCACCGCCGCTACTACCTCCGCCAGTGGTGGTGGCGGCGGC GGCGGTTCGGCGGCAGAACGGCCGCTGCAGCGCCTCCCGTCCTCCGCCCA GCGCGGCGGGAGAGGAGGCCTGGGTCAAGGGACGACCGCCCGAGCGTGGG CGCTACGCGCGGCAGCGCCGCCCCACCGCCCCCACCTGTCGAGAGTCAAG TCTTCTTCGCCCCGTGGCTTGGCAACGGCGGCGGCGGCAGCGGCGGCGGC GGCGGCGGCCTCCCAGGGGCTGCAGCAGCGGCGGCCGGAGTCCCCGGAAG CTCGGAGCGGGGCGGGGGACGCGGCGACGTCGAGTTTGCTCGAAAGGCCG GAGTTGTCGCCGGTGGAAGTGGAGAGGTATGTTTGTGTGTGTGTCGCAGC GGGCGATGCGTGTGCGGAGTATCTTGGCGATGGCGTGGTGTCGTTTCGGT TGCGTGTGTTGCGATGAGGAAGCTGCTCTTGGGTTTCAGAGCAACGAAGC CCCGGAACCCCGACCGTCTGGGGCACTCGTGTACATCACAAAGCTGGTTT TTCCCCGTTGACTCTACTGTCGCCTTTTTTATGCTTTCGATCAGTATCAC GCGGTTAGTGCGGTCGATGTCAAACGAAGTTACACGCGCGCACACACACC TACGCGCATCAACCCTTCAACATGTACCCACGCCCTGTTCCTCCTTTTCC GGGGCAGAGGTTCCGAGGGGGCCGCGTTCCGGAAGATAGGAGCGTCCACG GTAGCTACGACTACAGCGGCGGAGGACAAGGAGTCCGTCTTGGCGTGCGG TCGTCGCTCCAGCGGGACGTCTCCGGAACGAACCGTCAGTACCGGCGGCG GCGGCGGCGGCGGCGGTGTCTCGCAGGGTGCGGCGGCGGCGGCAGCGGCG GCGGCAGCGAGGGCCGAAGAAAGCGCGACGAAGCAGCTGCGAGAGGCCAG CAGTTTCTGGTTGGTGCGTGAATTCTGTGTACATACCGCCATGTGTCGGG GGGGGGGGTCCTCGTTGCCCGTGCTGCTGGGGAACGATGAACGTACGCGG GGTGAATGATGCGCTATGTGTGGTGTTGTACAGTAGGTGGGCTGTTTAGG TCGCACAGGTGGACGTACGTACGCAGATCGCCCCCGCACTGCTGTTGTGG TGGATGATCGATTCATGGTTCTCTCGGCGGTGCCTTTACCACCCCGTGGA CTAGACTAATAAGAAGGAGCTGCTCTACATGTAGTGCATGTTCCTCTGGA CCCATGCACGCCTTTGGGCTGGAGCTGTGTGCCACATCGACGCGCTCTCA AGGATGGATGCAGGTGTTCTAGATGAACGCGACCCGGAACGCTCCCAGAC ATCTAGAAGCCCAGATTCCGATGTCAAGATTCGATGCACGTGGTGCTATA GTCAATGCTCTTTTTGTGCGTCACGAACCCGCTGCTCGCCCCGAAACTAC TGAAATTGTCCATATCCACCCCTTCGACCCTGCCACTACTCCCCCCGCCT TTCTGTCTATGATTTACCGCACCCTCGAGCAGGACAAGTGGGGAATCAAG GCCGCAAAGACCGACGCCACACGGGAAAGGCACTCGAAAGAATTCCGAGA CAGCTATCCGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:594775..598637+

>mRNA_E-siliculosus-1a_M_contig88.16845.1 ID=mRNA_E-siliculosus-1a_M_contig88.16845.1|Name=mRNA_E-siliculosus-1a_M_contig88.16845.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3348bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:594775..598637+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGGCGGAGCTGCTGCAGACGCGTTATCGACGCTCTGTGCCCTTGCTT
CCGTCGAAACCGCTTGGGATCGTCGCCGTCGGTAAGTGGCGCTTCGGGCG
AGCACGACATGAGCCTGAACTTCATTCTGCACGGGGAGTGCGGCGTAGGG
AAGACGAGCCTCAGGAACCGGTGGGTCGACGGCATCTTCACGGGAGACGT
TGCACCCACGTTCGGCGTAGACTTCAACATAAAAACTCTCGACCTGGTGC
AAGAAGAAGGGGAAGACGAGGGCGACCAGGCGCGAGAGGAAGAGCCTGCC
GTCGCAGGCAAGACCTTACCGAGCGGAGGACGAGGAAAAGGTGGGTCCAC
GACCAAACAGGCGCCGTGCGCGGATCTGCAGGTGAAGATCAACGTGTACG
ACACGAGTGGCAAGCCTGGCTATCGAGAAGTTAACAGCACGTACCTGCTG
GCCTTCGACGCGGTGCTCTTCGTCTACGACATTTCCTCGGTGTCTACGCT
CAACATGGGGCGGAGCTGCTGCAGACGCGTTATCGACGCTCTGTGCCCTT
GCTTCCGTCGAAACCGCTTGGGATCGTCGCCGTCGGTAAGTGGCGCTTCG
GGCGAGCACGACATGAGCCTGAACTTCATTCTGCACGGGGAGTGCGGCGT
AGGGAAGACGAGCCTCAGGAACCGGTGGGTCGACGGCATCTTCACGGGAG
ACGTTGCACCCACGTTCGGCGTAGACTTCAACATAAAAACTCTCGACCTG
GTGCAAGAAGAAGGGGAAGACGAGGGCGACCAGGCGCGAGAGGAAGAGCC
TGCCGTCGCAGGCAAGACCTTACCGAGCGGAGGACGAGGAAAAGGTGGGT
CCACGACCAAACAGGCGCCGTGCGCGGATCTGCAGGTGAAGATCAACGTG
TACGACACGAGTGGCAAGCCTGGCTATCGAGAAGTTAACAGCACGTACCT
GCTGGCCTTCGACGCGGTGCTCTTCGTCTACGACATTTCCTCGGTGTCTA
CGCTCAACGAACTGCGCCGATATTTCAGCGACCCAGAGCACCGTGACAAG
CTTGCGGCGAAGAAGAAAGCAGGCATGGCAATGCTATTGGTGGGGAACAA
GTGCGACATGCCGCTATCGCAACGACAGGAACTGCGCCGATATTTCAGCG
ACCCAGAGCACCGTGACAAGCTTGCGGCGAAGAAGAAAGCAGGCATGGCA
ATGCTATTGGTGGGGAACAAGTGCGACATGCCGCTATCGCAACGACAGCA
GGTCGGGTCTCAGACAGGGCAAGACACTGCGGCAGAGTTCGGTATGCCCT
TTGTAGAGGTGAGCGCCAAGACCGGGGCCAACGTGAGAGAGGCCTTCATG
TTCGCCACGACTCGAGCCGTCGGGGAGTACCTCGCCCGCGCCAGGCTGAA
GCAGTCGGCGGGCAGGGGGGGGGGGGCGACGGTGAAGAAGACGATGCAGA
AGGTTCCGGGTCTTCAGCAGGTCGGGTCTCAGACAGGGCAAGACACTGCG
GCAGAGTTCGGTATGCCCTTTGTAGAGGTGAGCGCCAAGACCGGGGCCAA
CGTGAGAGAGGCCTTCATGTTCGCCACGACTCGAGCCGTCGGGGAGTACC
TCGCCCGCGCCAGGCTGAAGCAGTCGGCGGGCAGGGGGGGGGGGGCGACG
GTGAAGAAGACGATGCAGAAGGTTCCGGGTCTTCAGCGCGCTCTGCGCAC
GAGGGCTAGCGTGCTGGACGTGTTCAAAGGCCTGACGGGGCGTCGCCGTT
ACCCCCAGAAAGCCCAACCCGTCATCGTCCTCCCGGCATCCCCACCCACC
GCCGGCAACACCTCCACCGCCGCTACTACCTCCGCCAGTGGTGGTGGCGG
CGGCGGCGGTTCGGCGGCAGAACGGCCGCTGCAGCGCCTCCCGTCCTCCG
CCCAGCGCGGCGGGAGAGGAGGCCTGGGTCAAGGGACGACCGCCCGAGCG
TGGGCGCTACGCGCGGCAGCGCCGCCCCACCGCCCCCACCTGTCGAGAGT
CAAGTCTTCTTCGCCCCGTGGCTTGGCAACGGCGGCGGCGGCAGCGGCGG
CGGCGGCGGCGGCCTCCCAGGGGCTGCAGCAGCGGCGGCCGGAGTCCCCG
GAAGCTCGGAGCGGGGCGGGGGACGCGGCGACGTCGAGTTTGCTCGAAAG
GCCGGAGTTGTCGCCGGTGGAAGTGGAGAGCGCGCTCTGCGCACGAGGGC
TAGCGTGCTGGACGTGTTCAAAGGCCTGACGGGGCGTCGCCGTTACCCCC
AGAAAGCCCAACCCGTCATCGTCCTCCCGGCATCCCCACCCACCGCCGGC
AACACCTCCACCGCCGCTACTACCTCCGCCAGTGGTGGTGGCGGCGGCGG
CGGTTCGGCGGCAGAACGGCCGCTGCAGCGCCTCCCGTCCTCCGCCCAGC
GCGGCGGGAGAGGAGGCCTGGGTCAAGGGACGACCGCCCGAGCGTGGGCG
CTACGCGCGGCAGCGCCGCCCCACCGCCCCCACCTGTCGAGAGTCAAGTC
TTCTTCGCCCCGTGGCTTGGCAACGGCGGCGGCGGCAGCGGCGGCGGCGG
CGGCGGCCTCCCAGGGGCTGCAGCAGCGGCGGCCGGAGTCCCCGGAAGCT
CGGAGCGGGGCGGGGGACGCGGCGACGTCGAGTTTGCTCGAAAGGCCGGA
GTTGTCGCCGGTGGAAGTGGAGAGAGGTTCCGAGGGGGCCGCGTTCCGGA
AGATAGGAGCGTCCACGGTAGCTACGACTACAGCGGCGGAGGACAAGGAG
TCCGTCTTGGCGTGCGGTCGTCGCTCCAGCGGGACGTCTCCGGAACGAAC
CGTCAGTACCGGCGGCGGCGGCGGCGGCGGCGGTGTCTCGCAGGGTGCGG
CGGCGGCGGCAGCGGCGGCGGCAGCGAGGGCCGAAGAAAGCGCGACGAAG
CAGCTGCGAGAGGCCAGCAGTTTCTGGTTGAGGTTCCGAGGGGGCCGCGT
TCCGGAAGATAGGAGCGTCCACGGTAGCTACGACTACAGCGGCGGAGGAC
AAGGAGTCCGTCTTGGCGTGCGGTCGTCGCTCCAGCGGGACGTCTCCGGA
ACGAACCGTCAGTACCGGCGGCGGCGGCGGCGGCGGCGGTGTCTCGCAGG
GTGCGGCGGCGGCGGCAGCGGCGGCGGCAGCGAGGGCCGAAGAAAGCGCG
ACGAAGCAGCTGCGAGAGGCCAGCAGTTTCTGGTTGGACAAGTGGGGAAT
CAAGGCCGCAAAGACCGACGCCACACGGGAAAGGCACTCGAAAGAATTCC
GAGACAGCTATCCGTAGGACAAGTGGGGAATCAAGGCCGCAAAGACCGAC
GCCACACGGGAAAGGCACTCGAAAGAATTCCGAGACAGCTATCCGTAG
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