mRNA_E-siliculosus-1a_M_contig88.16845.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig88.16845.1 vs. uniprot
Match: D8LK97_ECTSI (Divergent RAB-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK97_ECTSI) HSP 1 Score: 860 bits (2221), Expect = 5.570e-311 Identity = 511/558 (91.58%), Postives = 517/558 (92.65%), Query Frame = 1
Query: 1 MGRSCCRRVIDALCPCFRRNRLGSSPSVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKTGANVREAFMFATTRAVGEYLARARLKQSAGRGGGATVKKTMQKVPGLQRALRTRASVLDVFKGLTGRRRYPQKAQPVIVLPASPPXXXXXXXXXXXXXXXXXXXXXX-AAERPLQRLPSSAQRGGRGGLGQGTTARAWALRAAAPPHRPHLSRVKSSSPRGLATAAXXXXXXXXXXQGLQQRRPESPEARSGAGDAATSSLLERPELSPVEVERGSEGAAFRKIGASTVATTTAAEDKESVLACGRRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEESATKQLREASSFWLDKWGIKAAKTDATRERHSKEFRDSYP 1671
MGRSCCRRV+DALCPCFR+NRLGSSPSVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGED GDQ REEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQ VGSQTGQDTAAEFGMPFVEVSAKTG NVREAFMFATTRAVGE+LAR RLKQSAGRG GATVKKTMQKVPGLQRALRTRASVLDVFKGLTGRRRYPQKAQPVIVLP XXXXXXXXXXXXXXXXXXXXXX AAERPLQRLPSSA+RGGRGGLGQGTTARAWALRAAAPPHR HLSR KS SPRGLATA+ QGLQQRRPESP A SG GDAATSSLLERPELSPVEVER SEGAAFRKIGAST+ATTTAAEDKESVLACGRRS XXXXXXXXXXXXXXXXXXXXXXX EESATKQLREASSFWLDKWGIKAAKTDATRERHSKEFR SYP
Sbjct: 1 MGRSCCRRVLDALCPCFRQNRLGSSPSVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDGGDQTREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQ-VGSQTGQDTAAEFGMPFVEVSAKTGTNVREAFMFATTRAVGEHLARTRLKQSAGRGRGATVKKTMQKVPGLQRALRTRASVLDVFKGLTGRRRYPQKAQPVIVLPXXXXXXXXXXXXXXXXXXXXXXXXXXXAAERPLQRLPSSARRGGRGGLGQGTTARAWALRAAAPPHRRHLSRAKSPSPRGLATASAAAAAS----QGLQQRRPESPVALSGTGDAATSSLLERPELSPVEVERRSEGAAFRKIGASTLATTTAAEDKESVLACGRRSSGTSPERTVSTXXXXXXXXXXXXXXXXXXXXXXXXEESATKQLREASSFWLDKWGIKAAKTDATRERHSKEFRGSYP 553
BLAST of mRNA_E-siliculosus-1a_M_contig88.16845.1 vs. uniprot
Match: A0A6H5KHP3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP3_9PHAE) HSP 1 Score: 785 bits (2028), Expect = 8.910e-282 Identity = 457/532 (85.90%), Postives = 472/532 (88.72%), Query Frame = 1
Query: 1 MGRSCCRRVIDALCPCFRRNRLGSSPSVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKTGANVREAFMFATTRAVGEYLARARLKQSAGRGGGATVKKTMQKVPGLQRALRTRASVLDVFKGLTGRRRYPQKAQPVIVLPASPPXXXXXXXXXXXXXXXXXXXXXXAA-ERPLQRLPSSAQRGGRGGLGQGTTARAWALRAAAPPHRPHLSRVKSSSPRGLATAAXXXXXXXXXXQGLQQRRPESPEARSGAGDAATSSLLERPELSPVEVERGSEGAAFRKIGASTVATTTAAEDKESVLACGRRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEESATKQLREASSFWL 1593
MGRSCCRR +DALCPCFRR+RLGSS SVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEE AVAGKTLPSGGRGKGGST KQAP ADL+VKINVYDTSGKPGYR+VNSTYLLAFDAVLFVYDISSVSTLNELR+YF++PEHR+KLAAKKKAGMAMLLVGNKCDMPLSQRQ VGSQTGQDTAAEFGMPFVEVSAKTG NVREAFMFATTRAVGE+LAR RLKQSAGRG GATVKKTMQKVPGLQRALRTRASVLDVF GLTGRRRYPQKAQPV +LPA+PP XXXXXXXXXXXXXXXXX ERPLQR SSA+RGGRGGLGQGTTA+AWALRAAAPPHR HLSR KSSSPRGL TAA QGLQQRRPESP ARSG GDAATSSLLERPELSPV+VERGSEGAAFRK GAST+ATTTAAEDKESVLACGRRS XXXXXXXXXXXAEESATKQLREASSFWL
Sbjct: 1 MGRSCCRRALDALCPCFRRHRLGSSTSVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEETAVAGKTLPSGGRGKGGSTAKQAPHADLKVKINVYDTSGKPGYRDVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNNPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQ-VGSQTGQDTAAEFGMPFVEVSAKTGTNVREAFMFATTRAVGEHLARTRLKQSAGRGRGATVKKTMQKVPGLQRALRTRASVLDVFTGLTGRRRYPQKAQPVGILPAAPPTAGNAXXXXXXXXXXXXXXXXXXXXERPLQRPSSSARRGGRGGLGQGTTAQAWALRAAAPPHRCHLSRAKSSSPRGLTTAAAAAF------QGLQQRRPESPVARSGTGDAATSSLLERPELSPVDVERGSEGAAFRKGGASTLATTTAAEDKESVLACGRRSSGTSPERTVSTSGGSHGDVSQGAXXXXXXXXXXXAEESATKQLREASSFWL 525
BLAST of mRNA_E-siliculosus-1a_M_contig88.16845.1 vs. uniprot
Match: M5X0Z8_PRUPE (Uncharacterized protein n=6 Tax=Prunus TaxID=3754 RepID=M5X0Z8_PRUPE) HSP 1 Score: 99.4 bits (246), Expect = 3.920e-20 Identity = 68/224 (30.36%), Postives = 106/224 (47.32%), Query Frame = 1
Query: 91 ASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKTGANVREAFMFATTRAVGEYLA 762
A +HD + +L G+ GVGK+ L R+ DG FT T G+DF I+T++L GK ++K+ ++DT+G+ +R + + Y +L VYD++ S+ N +R + + E ++ K +LVGNK DM S+R V + GQ A E+G+ F+E SAKT NV E F F+ R + + LA
Sbjct: 8 ARADHDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL----------------------------DGK-------------RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASVSVNK------ILVGNKADMDESKRA-VPASKGQALADEYGIKFLETSAKTNMNVEEVF-FSIGRDIKQRLA 182
BLAST of mRNA_E-siliculosus-1a_M_contig88.16845.1 vs. uniprot
Match: A0A6S8IR56_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8IR56_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 2.190e-19 Identity = 60/214 (28.04%), Postives = 96/214 (44.86%), Query Frame = 1
Query: 82 VSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKTGANVREAF 723
+S AS +DM + ++ G+ GVGKT L R+ + F+ T G+DF IK +D+ ++K+ ++DT+G+ +R + ++Y +L VYD++ + +R + S + + K +LVGNKCDM + V + GQ AAEFG+PF EVSAK V E+F
Sbjct: 1 MSQASAPYDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNVDI-----------------------------------------QGTRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWISQIQQHADVHVNK------ILVGNKCDM--MDEKVVSTAEGQKLAAEFGIPFAEVSAKNDIKVDESF 165
BLAST of mRNA_E-siliculosus-1a_M_contig88.16845.1 vs. uniprot
Match: A0A0W4ZI42_PNEC8 (GTP-binding protein ypt2 n=1 Tax=Pneumocystis carinii (strain B80) TaxID=1408658 RepID=A0A0W4ZI42_PNEC8) HSP 1 Score: 96.3 bits (238), Expect = 3.700e-19 Identity = 60/210 (28.57%), Postives = 98/210 (46.67%), Query Frame = 1
Query: 94 SGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKTGANVREAF 723
+G +D + +L G+ GVGK+ L R+ D FT T G+DF I+T++L GK ++K+ ++DT+G+ +R + + Y +L VYD++ + +R + S+ E G+ +LVGNKCD +R+ + + GQ A EFG+PF+E SAK+ NV +AF
Sbjct: 6 TGNYDYLIKLLLIGDSGVGKSCLLLRFSDDFFTPSFITTIGIDFKIRTIEL----------------------------DGK-------------RIKLQIWDTAGQERFRTITAAYYRGAMGILIVYDVTDEKSFQNVRLWVSNVEQHAS------EGVNKILVGNKCDW--EERRVISEEQGQALAQEFGIPFLETSAKSNINVDDAF 166
BLAST of mRNA_E-siliculosus-1a_M_contig88.16845.1 vs. uniprot
Match: A0A1A8K6D4_NOTKU (RAB8B, member RAS oncogene family n=5 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8K6D4_NOTKU) HSP 1 Score: 95.9 bits (237), Expect = 6.640e-19 Identity = 71/262 (27.10%), Postives = 117/262 (44.66%), Query Frame = 1
Query: 43 PCFRRNRLGSSPSVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKTGANVREAFMFATTRAVGEYLARARLKQSAGRGGGATVKKTMQK 828
P RR ++ P+ D L I+ G GVGKTSL R+ D F T GVDF IKT++L + ++++ ++DT+G+ +R + + Y ++ VYDI + + + ++ + + E +K +++GNKCDM + R+QV G+ A ++G+ F+E SAK+G NV EAF + R + L ++ S+G G G VK T +K
Sbjct: 3 PQSRRRKMPPRPA--------DFKLQIIIIGSRGVGKTSLMERYTDDTFCEACKSTVGVDFKIKTVEL-----------------------------------------REKKIRLQIWDTAGQERFRTITTAYYRGAMGIMLVYDICNEKSFDNIKNWIRNIEEHASSDVEK------MILGNKCDM--TDRRQVSKDRGEKLAIDYGVKFLETSAKSGLNVEEAF-YTMARDILHNLC-SKATDSSGEGSGKPVKITDKK 205
BLAST of mRNA_E-siliculosus-1a_M_contig88.16845.1 vs. uniprot
Match: A0A139AHQ4_GONPJ (Putative ethylene-responsive small GTP-binding protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AHQ4_GONPJ) HSP 1 Score: 95.5 bits (236), Expect = 7.190e-19 Identity = 61/215 (28.37%), Postives = 101/215 (46.98%), Query Frame = 1
Query: 82 VSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKTGANVREAFM 726
++ S +D + +L G+ GVGK+ L R+ D FT T G+DF I+T+DL GK +VK+ ++DT+G+ +R + + Y +L VYD++ + N +R + + E G++ +LVGNKCDM ++++ V + GQ A E+G+ F+E SAK+ V EAF+
Sbjct: 1 MAAKSASYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTPSFITTIGIDFKIRTVDL----------------------------DGK-------------RVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNVRNWIRNIEQHAT------EGVSKILVGNKCDM--NEKRAVTKEQGQALADEYGIRFIETSAKSNQGVEEAFL 166
BLAST of mRNA_E-siliculosus-1a_M_contig88.16845.1 vs. uniprot
Match: A0A1Y2HP65_9FUNG (Ras family-domain-containing protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HP65_9FUNG) HSP 1 Score: 95.1 bits (235), Expect = 1.050e-18 Identity = 58/214 (27.10%), Postives = 100/214 (46.73%), Query Frame = 1
Query: 82 VSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKTGANVREAF 723
++ S +D + +L G+ GVGK+ L R+ D FT T G+DF I+T++L GK ++K+ ++DT+G+ +R + + Y +L +YD++ + N +R + + E AG+ +LVGNKCD+ + ++ + + GQ+ A EFG+ F+E SAK+ V EAF
Sbjct: 1 MAAKSSTYDHLIKLLLIGDSGVGKSCLLLRFTDDSFTPSFITTIGIDFKIRTIEL----------------------------DGK-------------RIKLQIWDTAGQERFRTITTAYYRGAMGILLIYDVTDERSFNNIRNWIRNIEQHAS------AGVNKILVGNKCDV--ADKKVISKEQGQELADEFGIKFIETSAKSNIGVEEAF 165
BLAST of mRNA_E-siliculosus-1a_M_contig88.16845.1 vs. uniprot
Match: F0YC43_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC43_AURAN) HSP 1 Score: 94.7 bits (234), Expect = 1.080e-18 Identity = 63/212 (29.72%), Postives = 98/212 (46.23%), Query Frame = 1
Query: 91 ASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSD-PEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKTGANVREAF 723
A G +D+ + ++ G+ VGKTSL R+ + F+ T G+DF IKT++L GK +VK+ ++DT+G+ +R + +Y ++ VYDI+ T N +R + + EH D K +LVGNKCD S ++V + G+ A E+G+ F+E SAK NV EAF
Sbjct: 3 AHGPYDLQIKLLMIGDSAVGKTSLLLRYANDTFSSTFITTIGIDFKIKTINL----------------------------DGK-------------RVKLQIWDTAGQEQFRTITRSYFRGAQGIVLVYDITDRGTFNSVRSWMAQINEHADGQVNK-------ILVGNKCDN--SSARKVSADEGRKLADEYGVRFIETSAKQNVNVTEAF 164
BLAST of mRNA_E-siliculosus-1a_M_contig88.16845.1 vs. uniprot
Match: A0A1D1ZIW7_9ARAE (Ras-related protein Rab-8A n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZIW7_9ARAE) HSP 1 Score: 94.7 bits (234), Expect = 1.370e-18 Identity = 60/210 (28.57%), Postives = 97/210 (46.19%), Query Frame = 1
Query: 94 SGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKTGANVREAF 723
S +D + +L G+ GVGK+ L R+ D FT T G+DF I+T++L GK ++K+ ++DT+G+ +R + + Y +L VYD++ + N +R +FS+ E G+ +L+GNKCD +++ + + GQ A EFG+ F+E SAK NV EAF
Sbjct: 6 SAAYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTPSFITTIGIDFKIRTIEL----------------------------DGK-------------RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRNWFSNIEQHAS------EGVNKILIGNKCDW--LEKKVIAKEQGQLLADEFGIKFLETSAKANTNVEEAF 166 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig88.16845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig88.16845.1 >prot_E-siliculosus-1a_M_contig88.16845.1 ID=prot_E-siliculosus-1a_M_contig88.16845.1|Name=mRNA_E-siliculosus-1a_M_contig88.16845.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=558bp MGRSCCRRVIDALCPCFRRNRLGSSPSVSGASGEHDMSLNFILHGECGVGback to top mRNA from alignment at E-siliculosus-1a_M_contig88:594775..598637+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig88.16845.1 ID=mRNA_E-siliculosus-1a_M_contig88.16845.1|Name=mRNA_E-siliculosus-1a_M_contig88.16845.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3863bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:594775..598637+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:594775..598637+ >mRNA_E-siliculosus-1a_M_contig88.16845.1 ID=mRNA_E-siliculosus-1a_M_contig88.16845.1|Name=mRNA_E-siliculosus-1a_M_contig88.16845.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3348bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:594775..598637+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |